Wall clock time and date at job start Mon Mar 30 2020 06:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53006 * 109.46854 * 2 1 4 4 C 1.52996 * 109.46984 * 174.83319 * 3 2 1 5 5 H 1.08997 * 109.46721 * 303.51333 * 4 3 2 6 6 C 1.53044 * 109.46121 * 63.47840 * 4 3 2 7 7 C 1.53117 * 109.27888 * 179.19256 * 6 4 3 8 8 C 1.53118 * 109.16252 * 302.34564 * 7 6 4 9 9 C 1.53037 * 109.27747 * 57.65312 * 8 7 6 10 10 N 1.46850 * 109.52525 * 300.81950 * 9 8 7 11 11 C 1.46899 * 110.99996 * 185.83538 * 10 9 8 12 12 C 1.52998 * 109.46606 * 51.82445 * 11 10 9 13 13 O 1.42895 * 109.47559 * 62.16770 * 12 11 10 14 14 C 1.42904 * 114.00085 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.46834 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00650 * 0.02562 * 15 14 13 17 17 C 1.37887 * 120.00135 * 180.02562 * 15 14 13 18 18 N 1.31518 * 119.99283 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00325 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47313 * 89.99538 * 19 17 15 21 21 H 1.48500 * 109.46894 * 210.00078 * 19 17 15 22 22 H 1.48496 * 109.47001 * 329.99559 * 19 17 15 23 23 H 1.08996 * 109.46672 * 59.99783 * 1 2 3 24 24 H 1.08996 * 109.46770 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46815 * 300.00094 * 1 2 3 26 26 H 1.08994 * 109.47056 * 240.00361 * 2 1 3 27 27 H 1.09002 * 109.46982 * 119.99586 * 2 1 3 28 28 H 1.08997 * 109.47043 * 294.84089 * 3 2 1 29 29 H 1.09005 * 109.47056 * 54.83606 * 3 2 1 30 30 H 1.08998 * 109.49917 * 299.13461 * 6 4 3 31 31 H 1.09000 * 109.50226 * 59.24853 * 6 4 3 32 32 H 1.09003 * 109.52314 * 182.43866 * 7 6 4 33 33 H 1.09002 * 109.57177 * 62.28339 * 7 6 4 34 34 H 1.08998 * 109.50287 * 297.71660 * 8 7 6 35 35 H 1.08993 * 109.53411 * 177.61562 * 8 7 6 36 36 H 1.09004 * 109.46314 * 180.80376 * 9 8 7 37 37 H 1.08997 * 109.46259 * 60.83842 * 9 8 7 38 38 H 1.08998 * 109.46791 * 171.81547 * 11 10 9 39 39 H 1.08992 * 109.47722 * 291.82315 * 11 10 9 40 40 H 1.09005 * 109.47209 * 182.16845 * 12 11 10 41 41 H 1.09003 * 109.47488 * 302.16174 * 12 11 10 42 42 H 1.09000 * 109.47101 * 300.00043 * 14 13 12 43 43 H 1.08999 * 109.46777 * 60.00598 * 14 13 12 44 44 H 0.97003 * 119.99764 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5645 1.4446 0.1299 5 1 3.8530 0.9036 1.0311 6 6 4.1814 0.7624 -1.0934 7 6 5.7073 0.7846 -0.9687 8 6 6.1794 2.2349 -0.8331 9 6 5.5047 2.8743 0.3825 10 7 4.0465 2.8291 0.2148 11 6 3.3693 3.5568 1.2964 12 6 3.9661 4.9603 1.4182 13 8 3.7424 5.6801 0.2042 14 6 4.2633 7.0108 0.2130 15 6 3.9729 7.6726 -1.1094 16 1 3.4433 7.1314 -1.8794 17 6 4.3835 8.9692 -1.3363 18 7 5.0281 9.6284 -0.3984 19 14 4.0230 9.7898 -2.9752 20 1 2.7105 10.4809 -2.9047 21 1 5.0880 10.7794 -3.2780 22 1 3.9840 8.7614 -4.0457 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.7541 1.9290 -0.9326 29 1 1.6031 1.9824 0.8402 30 1 3.8356 -0.2699 -1.1473 31 1 3.8821 1.2946 -1.9963 32 1 6.1520 0.3384 -1.8583 33 1 6.0099 0.2191 -0.0875 34 1 5.9117 2.7903 -1.7320 35 1 7.2612 2.2552 -0.7015 36 1 5.8278 3.9114 0.4736 37 1 5.7838 2.3268 1.2827 38 1 2.3053 3.6326 1.0726 39 1 3.5059 3.0212 2.2358 40 1 3.4904 5.4869 2.2456 41 1 5.0375 4.8848 1.6038 42 1 3.7934 7.5796 1.0154 43 1 5.3409 6.9781 0.3736 44 1 5.3166 10.5407 -0.5579 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339088553.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:41 Heat of formation + Delta-G solvation = -69.131852 kcal Electronic energy + Delta-G solvation = -19849.582902 eV Core-core repulsion = 16993.940675 eV Total energy + Delta-G solvation = -2855.642227 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.44379 -36.60733 -34.94057 -33.65081 -32.52080 -30.83433 -28.75431 -26.81300 -26.32879 -24.18350 -22.45149 -22.21315 -20.83464 -20.59148 -19.45939 -16.35094 -16.18089 -15.54049 -15.31722 -14.96473 -14.42570 -14.23537 -14.21711 -13.90368 -13.59692 -13.19821 -12.91771 -12.75322 -12.50745 -12.18407 -11.82773 -11.67613 -11.38567 -11.29870 -11.03646 -10.91152 -10.78449 -10.75654 -10.70171 -10.55067 -10.40804 -10.08154 -9.92616 -9.77979 -9.02856 -8.73198 -8.08314 -7.91591 -6.05442 -4.06056 3.34156 3.38884 3.45074 4.03851 4.40422 4.75714 4.80555 4.89998 5.01661 5.05410 5.12802 5.18440 5.30424 5.31151 5.43332 5.53773 5.60529 5.62860 5.69405 5.72318 5.77405 5.82988 5.86449 5.92889 5.99195 6.05715 6.07421 6.12521 6.14033 6.20805 6.31532 6.38102 6.39814 6.42470 6.57258 7.16321 7.41657 7.46035 7.49578 7.86839 8.23048 8.68207 9.09000 9.58640 11.06319 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.021309 B = 0.004629 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.683752 B = 6046.807448 C = 6383.993467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.118 4.118 4 C 0.087 3.913 5 H 0.032 0.968 6 C -0.111 4.111 7 C -0.120 4.120 8 C -0.117 4.117 9 C 0.054 3.946 10 N -0.518 5.518 11 C 0.060 3.940 12 C 0.061 3.939 13 O -0.377 6.377 14 C 0.194 3.806 15 C -0.509 4.509 16 H 0.067 0.933 17 C 0.055 3.945 18 N -0.901 5.901 19 Si 0.906 3.094 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.271 1.271 23 H 0.055 0.945 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.022 0.978 38 H 0.084 0.916 39 H 0.034 0.966 40 H 0.038 0.962 41 H 0.037 0.963 42 H 0.002 0.998 43 H 0.002 0.998 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.451 -19.471 2.631 19.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.155 4.155 4 C -0.021 4.021 5 H 0.050 0.950 6 C -0.149 4.149 7 C -0.157 4.157 8 C -0.154 4.154 9 C -0.074 4.074 10 N -0.242 5.242 11 C -0.068 4.068 12 C -0.017 4.017 13 O -0.296 6.296 14 C 0.119 3.881 15 C -0.547 4.547 16 H 0.085 0.915 17 C -0.146 4.146 18 N -0.541 5.541 19 Si 0.734 3.266 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.196 1.196 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.105 0.895 37 H 0.040 0.960 38 H 0.102 0.898 39 H 0.052 0.948 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.019 0.981 43 H 0.020 0.980 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.571 -19.131 2.064 19.413 hybrid contribution 0.282 0.354 0.344 0.569 sum -2.289 -18.776 2.409 19.068 Atomic orbital electron populations 1.21769 0.95956 1.01208 1.01999 1.21552 0.95737 0.97056 1.01701 1.21747 0.94208 0.96301 1.03267 1.21632 0.94672 0.88869 0.96924 0.95045 1.21657 0.94967 0.99583 0.98686 1.21581 0.96042 0.97057 1.01065 1.21570 0.98898 0.95437 0.99542 1.22153 0.87648 1.01574 0.96022 1.61810 1.04591 1.12410 1.45435 1.22178 1.00007 0.93092 0.91487 1.22357 0.98118 0.91631 0.89636 1.87973 1.80179 1.28430 1.33065 1.20175 0.92905 0.77511 0.97497 1.21066 1.36513 0.97597 0.99528 0.91516 1.24945 0.95146 0.96920 0.97545 1.69971 1.39141 1.11581 1.33362 0.86355 0.77875 0.79041 0.83346 1.20528 1.21165 1.19601 0.92583 0.93087 0.92835 0.91879 0.92511 0.90762 0.91697 0.91896 0.90894 0.92160 0.92822 0.90605 0.91973 0.89548 0.96000 0.89797 0.94842 0.94407 0.94483 0.98067 0.98020 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.91 37.16 0.37 -0.97 16 2 C -0.12 -1.16 5.52 -26.72 -0.15 -1.31 16 3 C -0.12 -1.39 4.39 -26.73 -0.12 -1.50 16 4 C 0.09 1.11 1.93 -67.72 -0.13 0.98 16 5 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 6 C -0.11 -1.29 5.08 -26.65 -0.14 -1.43 16 7 C -0.12 -1.36 6.00 -26.61 -0.16 -1.52 16 8 C -0.12 -1.57 6.09 -26.65 -0.16 -1.73 16 9 C 0.05 0.81 5.04 -3.83 -0.02 0.79 16 10 N -0.52 -8.15 4.50 -226.69 -1.02 -9.17 16 11 C 0.06 0.95 4.85 -3.83 -0.02 0.93 16 12 C 0.06 1.16 5.55 37.16 0.21 1.37 16 13 O -0.38 -9.33 10.23 -35.23 -0.36 -9.69 16 14 C 0.19 5.43 5.69 36.00 0.20 5.63 16 15 C -0.51 -15.29 9.43 -34.44 -0.32 -15.62 16 16 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 17 C 0.06 1.62 5.46 -17.81 -0.10 1.52 16 18 N -0.90 -27.37 13.29 55.43 0.74 -26.64 16 19 Si 0.91 22.24 29.54 -169.99 -5.02 17.22 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 22 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.57 6.80 -51.93 -0.35 0.22 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.06 0.78 6.21 -51.93 -0.32 0.46 16 30 H 0.06 0.62 6.68 -51.93 -0.35 0.27 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.09 1.50 5.79 -51.93 -0.30 1.20 16 37 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.08 1.33 6.38 -51.93 -0.33 1.00 16 39 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.04 0.69 6.06 -51.93 -0.31 0.38 16 42 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 43 H 0.00 0.06 8.14 -51.93 -0.42 -0.37 16 44 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 338.13 15.07 5.10 5.10 Total: -1.00 -31.23 338.13 -9.38 -40.61 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -8.28 Total: -4.57 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -0.53 Total: -12.85 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: -0.28 Total: -35.81 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: -0.36 Total: -9.69 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.23 -9.38 -40.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339088553.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.523 kcal (2) G-P(sol) polarization free energy of solvation -31.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds