Wall clock time and date at job start Mon Mar 30 2020 06:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53006 * 109.46854 * 2 1 4 4 C 1.52996 * 109.46984 * 174.83319 * 3 2 1 5 5 H 1.08997 * 109.46721 * 303.51333 * 4 3 2 6 6 C 1.53044 * 109.46121 * 63.47840 * 4 3 2 7 7 C 1.53117 * 109.27888 * 179.19256 * 6 4 3 8 8 C 1.53118 * 109.16252 * 302.34564 * 7 6 4 9 9 C 1.53037 * 109.27747 * 57.65312 * 8 7 6 10 10 N 1.46850 * 109.52525 * 300.81950 * 9 8 7 11 11 C 1.46899 * 110.99996 * 185.83538 * 10 9 8 12 12 C 1.52998 * 109.46606 * 51.82445 * 11 10 9 13 13 O 1.42895 * 109.47559 * 62.16770 * 12 11 10 14 14 C 1.42904 * 114.00085 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.46834 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00650 * 0.02562 * 15 14 13 17 17 C 1.37887 * 120.00135 * 180.02562 * 15 14 13 18 18 N 1.31518 * 119.99283 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00325 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47313 * 89.99538 * 19 17 15 21 21 H 1.48500 * 109.46894 * 210.00078 * 19 17 15 22 22 H 1.48496 * 109.47001 * 329.99559 * 19 17 15 23 23 H 1.08996 * 109.46672 * 59.99783 * 1 2 3 24 24 H 1.08996 * 109.46770 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46815 * 300.00094 * 1 2 3 26 26 H 1.08994 * 109.47056 * 240.00361 * 2 1 3 27 27 H 1.09002 * 109.46982 * 119.99586 * 2 1 3 28 28 H 1.08997 * 109.47043 * 294.84089 * 3 2 1 29 29 H 1.09005 * 109.47056 * 54.83606 * 3 2 1 30 30 H 1.08998 * 109.49917 * 299.13461 * 6 4 3 31 31 H 1.09000 * 109.50226 * 59.24853 * 6 4 3 32 32 H 1.09003 * 109.52314 * 182.43866 * 7 6 4 33 33 H 1.09002 * 109.57177 * 62.28339 * 7 6 4 34 34 H 1.08998 * 109.50287 * 297.71660 * 8 7 6 35 35 H 1.08993 * 109.53411 * 177.61562 * 8 7 6 36 36 H 1.09004 * 109.46314 * 180.80376 * 9 8 7 37 37 H 1.08997 * 109.46259 * 60.83842 * 9 8 7 38 38 H 1.08998 * 109.46791 * 171.81547 * 11 10 9 39 39 H 1.08992 * 109.47722 * 291.82315 * 11 10 9 40 40 H 1.09005 * 109.47209 * 182.16845 * 12 11 10 41 41 H 1.09003 * 109.47488 * 302.16174 * 12 11 10 42 42 H 1.09000 * 109.47101 * 300.00043 * 14 13 12 43 43 H 1.08999 * 109.46777 * 60.00598 * 14 13 12 44 44 H 0.97003 * 119.99764 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5645 1.4446 0.1299 5 1 3.8530 0.9036 1.0311 6 6 4.1814 0.7624 -1.0934 7 6 5.7073 0.7846 -0.9687 8 6 6.1794 2.2349 -0.8331 9 6 5.5047 2.8743 0.3825 10 7 4.0465 2.8291 0.2148 11 6 3.3693 3.5568 1.2964 12 6 3.9661 4.9603 1.4182 13 8 3.7424 5.6801 0.2042 14 6 4.2633 7.0108 0.2130 15 6 3.9729 7.6726 -1.1094 16 1 3.4433 7.1314 -1.8794 17 6 4.3835 8.9692 -1.3363 18 7 5.0281 9.6284 -0.3984 19 14 4.0230 9.7898 -2.9752 20 1 2.7105 10.4809 -2.9047 21 1 5.0880 10.7794 -3.2780 22 1 3.9840 8.7614 -4.0457 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.7541 1.9290 -0.9326 29 1 1.6031 1.9824 0.8402 30 1 3.8356 -0.2699 -1.1473 31 1 3.8821 1.2946 -1.9963 32 1 6.1520 0.3384 -1.8583 33 1 6.0099 0.2191 -0.0875 34 1 5.9117 2.7903 -1.7320 35 1 7.2612 2.2552 -0.7015 36 1 5.8278 3.9114 0.4736 37 1 5.7838 2.3268 1.2827 38 1 2.3053 3.6326 1.0726 39 1 3.5059 3.0212 2.2358 40 1 3.4904 5.4869 2.2456 41 1 5.0375 4.8848 1.6038 42 1 3.7934 7.5796 1.0154 43 1 5.3409 6.9781 0.3736 44 1 5.3166 10.5407 -0.5579 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339088553.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:41 Heat of formation + Delta-G solvation = -88.352728 kcal Electronic energy + Delta-G solvation = -19850.416381 eV Core-core repulsion = 16993.940675 eV Total energy + Delta-G solvation = -2856.475706 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.57518 -38.41694 -35.86075 -35.17122 -34.46560 -31.78941 -30.35802 -28.72063 -27.36448 -25.39857 -24.47325 -23.34454 -22.09914 -21.53324 -20.53595 -18.61310 -17.50803 -17.38148 -16.47507 -16.20226 -16.00055 -15.89652 -15.32517 -15.03413 -14.84996 -14.48743 -14.14972 -13.95008 -13.73792 -13.57361 -13.22865 -12.98983 -12.86009 -12.73888 -12.46832 -12.38537 -12.25166 -12.01062 -11.89654 -11.77830 -11.55502 -11.43816 -11.26036 -11.03137 -10.92249 -10.81702 -10.17178 -9.08152 -8.31794 -6.43595 1.39174 1.42251 1.54518 2.35140 2.90019 3.01861 3.24529 3.79262 3.86114 3.99893 4.08162 4.21652 4.23835 4.26162 4.33917 4.39301 4.45562 4.48701 4.58537 4.65520 4.75393 4.79328 4.82227 4.92611 4.93000 4.97038 5.02511 5.07291 5.11383 5.14567 5.19425 5.24317 5.29684 5.33966 5.44100 5.50661 5.55293 5.56596 5.97589 6.21666 6.35710 6.57067 6.86089 7.28582 8.80721 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.021309 B = 0.004629 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.683752 B = 6046.807448 C = 6383.993467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.114 4.114 4 C 0.088 3.912 5 H 0.044 0.956 6 C -0.109 4.109 7 C -0.114 4.114 8 C -0.116 4.116 9 C 0.055 3.945 10 N -0.544 5.544 11 C 0.069 3.931 12 C 0.052 3.948 13 O -0.392 6.392 14 C 0.210 3.790 15 C -0.544 4.544 16 H 0.058 0.942 17 C 0.007 3.993 18 N -0.931 5.931 19 Si 0.982 3.018 20 H -0.267 1.267 21 H -0.273 1.273 22 H -0.266 1.266 23 H 0.048 0.952 24 H 0.065 0.935 25 H 0.051 0.949 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.088 0.912 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.048 0.952 35 H 0.074 0.926 36 H 0.053 0.947 37 H 0.039 0.961 38 H 0.081 0.919 39 H 0.063 0.937 40 H 0.045 0.955 41 H 0.040 0.960 42 H -0.017 1.017 43 H -0.019 1.019 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.742 -21.099 2.185 21.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.152 4.152 4 C -0.020 4.020 5 H 0.062 0.938 6 C -0.147 4.147 7 C -0.151 4.151 8 C -0.154 4.154 9 C -0.073 4.073 10 N -0.269 5.269 11 C -0.059 4.059 12 C -0.025 4.025 13 O -0.311 6.311 14 C 0.135 3.865 15 C -0.582 4.582 16 H 0.077 0.923 17 C -0.191 4.191 18 N -0.571 5.571 19 Si 0.805 3.195 20 H -0.192 1.192 21 H -0.198 1.198 22 H -0.190 1.190 23 H 0.067 0.933 24 H 0.084 0.916 25 H 0.070 0.930 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.106 0.894 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.057 0.943 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.000 1.000 43 H -0.001 1.001 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.866 -20.781 1.635 21.041 hybrid contribution 0.389 0.832 0.560 1.076 sum -2.477 -19.949 2.194 20.222 Atomic orbital electron populations 1.21772 0.95558 1.02035 1.01605 1.21507 0.96054 0.95266 1.02545 1.21713 0.93738 0.97868 1.01882 1.21727 0.95123 0.87204 0.97913 0.93828 1.21665 0.95259 1.00549 0.97211 1.21556 0.95729 0.95367 1.02477 1.21564 0.99622 0.96714 0.97515 1.22091 0.87645 1.00011 0.97562 1.61791 1.04920 1.14541 1.45681 1.22079 0.99478 0.91164 0.93131 1.22689 0.98929 0.93125 0.87797 1.87928 1.80003 1.27059 1.36134 1.19782 0.91401 0.79013 0.96349 1.21359 1.37844 0.98762 1.00238 0.92326 1.25947 0.94185 0.97157 1.01825 1.70075 1.39268 1.12192 1.35558 0.85198 0.78406 0.77970 0.77939 1.19189 1.19782 1.19030 0.93265 0.91635 0.93017 0.91153 0.91413 0.92892 0.92228 0.89360 0.92856 0.90713 0.91267 0.93318 0.90700 0.92843 0.94272 0.90055 0.91920 0.93688 0.94163 0.99951 1.00106 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.91 71.99 0.71 -1.69 16 2 C -0.12 -1.92 5.52 30.60 0.17 -1.75 16 3 C -0.11 -2.57 4.39 30.59 0.13 -2.43 16 4 C 0.09 2.10 1.93 44.94 0.09 2.19 16 5 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 6 C -0.11 -2.34 5.08 30.65 0.16 -2.18 16 7 C -0.11 -2.33 6.00 30.67 0.18 -2.14 16 8 C -0.12 -3.08 6.09 30.65 0.19 -2.89 16 9 C 0.05 1.64 5.04 86.32 0.43 2.08 16 10 N -0.54 -16.97 4.50 -871.11 -3.92 -20.90 16 11 C 0.07 2.16 4.85 86.30 0.42 2.57 16 12 C 0.05 2.03 5.55 71.98 0.40 2.43 16 13 O -0.39 -20.16 10.23 -148.98 -1.52 -21.68 16 14 C 0.21 12.29 5.69 71.24 0.41 12.69 16 15 C -0.54 -33.64 9.43 25.60 0.24 -33.40 16 16 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16 17 C 0.01 0.42 5.46 84.66 0.46 0.88 16 18 N -0.93 -57.24 13.29 21.45 0.28 -56.96 16 19 Si 0.98 45.58 29.54 68.60 2.03 47.61 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 23 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.07 1.08 6.80 -2.39 -0.02 1.06 16 27 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.06 1.38 6.21 -2.38 -0.01 1.37 16 30 H 0.09 1.45 6.68 -2.39 -0.02 1.44 16 31 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.05 1.93 5.79 -2.39 -0.01 1.92 16 37 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.08 2.58 6.38 -2.39 -0.02 2.56 16 39 H 0.06 1.60 8.14 -2.39 -0.02 1.59 16 40 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 41 H 0.04 1.56 6.06 -2.39 -0.01 1.54 16 42 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 43 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 44 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -68.17 338.13 1.78 -66.39 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: 0.93 Total: 9.19 kcal Atomic # 6 Polarization: -27.64 SS G_CDS: 3.99 Total: -23.65 kcal Atomic # 7 Polarization: -74.22 SS G_CDS: -3.64 Total: -77.85 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -1.52 Total: -21.68 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -68.17 1.78 -66.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339088553.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.964 kcal (2) G-P(sol) polarization free energy of solvation -68.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds