Wall clock time and date at job start Mon Mar 30 2020 07:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46926 * 2 1 4 4 H 1.09002 * 109.47097 * 55.00131 * 3 2 1 5 5 C 1.52999 * 109.47628 * 295.00334 * 3 2 1 6 6 C 1.52997 * 109.47317 * 180.02562 * 5 3 2 7 7 C 1.53000 * 109.47060 * 59.99960 * 6 5 3 8 8 C 1.53002 * 109.47233 * 299.99657 * 7 6 5 9 9 C 1.52997 * 109.46817 * 60.00194 * 8 7 6 10 10 H 1.09002 * 109.47153 * 60.00231 * 9 8 7 11 11 N 1.46905 * 109.47252 * 180.02562 * 9 8 7 12 12 C 1.46906 * 110.99723 * 275.00122 * 11 9 8 13 13 C 1.52993 * 109.46906 * 179.97438 * 12 11 9 14 14 O 1.42898 * 109.47452 * 64.99951 * 13 12 11 15 15 C 1.42895 * 114.00363 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.47148 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00125 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99687 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00451 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99520 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46928 * 60.00763 * 20 18 16 22 22 H 1.48506 * 109.46929 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47545 * 300.00037 * 20 18 16 24 24 H 1.09000 * 109.47081 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47396 * 299.99642 * 1 2 3 26 26 H 1.08998 * 109.47230 * 59.99893 * 1 2 3 27 27 H 1.09000 * 109.47396 * 240.00358 * 2 1 3 28 28 H 1.08998 * 109.47230 * 120.00107 * 2 1 3 29 29 H 1.08996 * 109.46929 * 59.99225 * 5 3 2 30 30 H 1.09002 * 109.46716 * 300.00030 * 5 3 2 31 31 H 1.09002 * 109.47153 * 299.99641 * 6 5 3 32 32 H 1.09001 * 109.46832 * 179.97438 * 6 5 3 33 33 H 1.08992 * 109.47399 * 59.99823 * 7 6 5 34 34 H 1.09004 * 109.46724 * 180.02562 * 7 6 5 35 35 H 1.08993 * 109.47662 * 180.02562 * 8 7 6 36 36 H 1.09002 * 109.47075 * 300.00932 * 8 7 6 37 37 H 1.00902 * 111.00313 * 151.04585 * 11 9 8 38 38 H 1.08994 * 109.46823 * 299.99794 * 12 11 9 39 39 H 1.09001 * 109.47053 * 59.99562 * 12 11 9 40 40 H 1.09001 * 109.46865 * 184.99966 * 13 12 11 41 41 H 1.09003 * 109.47193 * 304.99883 * 13 12 11 42 42 H 1.08996 * 109.47450 * 300.00194 * 15 14 13 43 43 H 1.09005 * 109.46850 * 60.00537 * 15 14 13 44 44 H 0.96994 * 119.99935 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6351 2.1267 -1.3073 6 6 2.1457 3.5690 -1.3075 7 6 3.6705 3.5702 -1.1821 8 6 4.0754 2.8862 0.1253 9 6 3.5648 1.4439 0.1255 10 1 3.9991 0.9046 -0.7164 11 7 3.9530 0.7872 1.3809 12 6 5.3129 0.2392 1.2898 13 6 5.6809 -0.4346 2.6132 14 8 4.8316 -1.5641 2.8250 15 6 5.0939 -2.2689 4.0401 16 6 4.1460 -3.4344 4.1594 17 1 3.4160 -3.6183 3.3851 18 6 4.2101 -4.2653 5.2578 19 7 5.0980 -4.0406 6.2016 20 14 3.0346 -5.7096 5.4061 21 1 3.2268 -6.6246 4.2524 22 1 3.3073 -6.4421 6.6689 23 1 1.6360 -5.2107 5.4148 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.5489 2.1253 -1.3968 30 1 2.0698 1.5877 -2.1491 31 1 1.7114 4.1083 -0.4656 32 1 1.8576 4.0562 -2.2390 33 1 4.1048 3.0310 -2.0239 34 1 4.0342 4.5978 -1.1818 35 1 5.1616 2.8874 0.2149 36 1 3.6410 3.4254 0.9671 37 1 3.2901 0.0696 1.6337 38 1 5.3561 -0.4936 0.4842 39 1 6.0168 1.0460 1.0852 40 1 6.7197 -0.7628 2.5772 41 1 5.5521 0.2751 3.4304 42 1 6.1205 -2.6352 4.0334 43 1 4.9532 -1.5974 4.8871 44 1 5.1433 -4.6254 6.9741 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339096036.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:21 Heat of formation + Delta-G solvation = -86.202504 kcal Electronic energy + Delta-G solvation = -19587.410108 eV Core-core repulsion = 16731.027643 eV Total energy + Delta-G solvation = -2856.382466 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.43687 -36.90567 -34.63893 -33.97488 -32.66271 -30.19068 -29.14239 -27.42273 -26.19199 -24.04170 -22.35911 -21.95702 -21.01374 -20.62897 -19.71255 -16.47579 -16.03827 -15.54706 -15.38290 -14.88082 -14.59461 -14.44817 -14.13320 -14.00339 -13.55023 -13.23336 -13.12486 -12.64342 -12.43131 -12.15937 -11.66935 -11.60894 -11.45749 -11.42938 -11.19469 -11.07835 -10.82653 -10.80622 -10.71360 -10.61386 -10.41293 -10.12271 -9.94496 -9.86267 -9.10374 -8.80295 -8.15265 -8.11322 -6.09558 -4.11437 3.32566 3.35304 3.38961 4.29864 4.35929 4.60784 4.65126 4.83720 4.96889 5.00265 5.16555 5.26072 5.26784 5.30894 5.41734 5.44778 5.48099 5.58524 5.62789 5.67671 5.71513 5.78215 5.92931 5.94674 5.97839 6.06716 6.09064 6.12465 6.16545 6.23853 6.27553 6.32298 6.34911 6.41677 6.50024 7.13512 7.35278 7.46053 7.76869 7.80010 8.16945 8.59856 9.01440 9.53324 11.01963 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.025943 B = 0.004303 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.045505 B = 6505.553696 C = 7421.963411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C -0.088 4.088 4 H 0.078 0.922 5 C -0.112 4.112 6 C -0.119 4.119 7 C -0.119 4.119 8 C -0.107 4.107 9 C 0.092 3.908 10 H 0.039 0.961 11 N -0.686 5.686 12 C 0.067 3.933 13 C 0.062 3.938 14 O -0.399 6.399 15 C 0.197 3.803 16 C -0.515 4.515 17 H 0.065 0.935 18 C 0.057 3.943 19 N -0.899 5.899 20 Si 0.907 3.093 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.275 1.275 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.356 0.644 38 H 0.032 0.968 39 H 0.073 0.927 40 H 0.039 0.961 41 H 0.046 0.954 42 H 0.004 0.996 43 H 0.006 0.994 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.825 13.930 -14.764 20.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C -0.106 4.106 4 H 0.096 0.904 5 C -0.150 4.150 6 C -0.157 4.157 7 C -0.157 4.157 8 C -0.145 4.145 9 C -0.018 4.018 10 H 0.057 0.943 11 N -0.322 5.322 12 C -0.063 4.063 13 C -0.016 4.016 14 O -0.319 6.319 15 C 0.123 3.877 16 C -0.553 4.553 17 H 0.083 0.917 18 C -0.144 4.144 19 N -0.538 5.538 20 Si 0.735 3.265 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.200 1.200 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.179 0.821 38 H 0.050 0.950 39 H 0.091 0.909 40 H 0.057 0.943 41 H 0.064 0.936 42 H 0.021 0.979 43 H 0.024 0.976 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.700 14.355 -14.393 20.864 hybrid contribution -0.333 -1.497 -0.123 1.538 sum -5.033 12.859 -14.516 20.035 Atomic orbital electron populations 1.21772 0.95765 1.01622 1.01526 1.21662 0.96179 0.96302 1.02474 1.21322 0.94815 0.96192 0.98301 0.90391 1.21604 1.00602 0.95491 0.97334 1.21541 0.95879 0.96849 1.01414 1.21541 0.95873 1.00237 0.98059 1.21529 1.00489 0.95267 0.97221 1.21505 0.94273 0.94948 0.91062 0.94307 1.60550 1.04201 1.36070 1.31337 1.21972 0.91045 0.96601 0.96660 1.22300 0.93712 0.89416 0.96171 1.87778 1.58229 1.41248 1.44692 1.20165 0.96124 0.90782 0.80615 1.21014 1.17872 1.10387 1.06052 0.91700 1.24941 0.96068 0.98140 0.95291 1.69952 1.34970 1.38865 1.09977 0.86410 0.81037 0.81771 0.77331 1.20067 1.21151 1.19993 0.92783 0.92658 0.92916 0.92288 0.90930 0.91707 0.92242 0.91959 0.92398 0.92351 0.92185 0.92299 0.91352 0.82098 0.94970 0.90872 0.94277 0.93596 0.97867 0.97635 0.92606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.67 37.16 0.36 -1.24 16 2 C -0.13 -1.55 5.27 -26.73 -0.14 -1.69 16 3 C -0.09 -0.99 1.85 -90.62 -0.17 -1.16 16 4 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 5 C -0.11 -1.06 4.96 -26.73 -0.13 -1.19 16 6 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 7 C -0.12 -1.09 5.92 -26.73 -0.16 -1.24 16 8 C -0.11 -1.19 5.43 -26.73 -0.15 -1.33 16 9 C 0.09 1.15 1.97 -67.71 -0.13 1.01 16 10 H 0.04 0.50 7.80 -51.93 -0.41 0.10 16 11 N -0.69 -10.52 6.31 -106.72 -0.67 -11.19 16 12 C 0.07 1.05 5.90 -3.82 -0.02 1.02 16 13 C 0.06 1.19 6.28 37.15 0.23 1.42 16 14 O -0.40 -9.66 9.85 -35.23 -0.35 -10.01 16 15 C 0.20 5.49 5.69 36.01 0.20 5.69 16 16 C -0.52 -15.26 9.43 -34.44 -0.32 -15.58 16 17 H 0.06 1.89 7.81 -52.49 -0.41 1.48 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.90 -27.12 13.29 55.43 0.74 -26.39 16 20 Si 0.91 21.94 29.54 -169.99 -5.02 16.92 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.49 6.56 -51.93 -0.34 0.15 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 1.04 6.03 -51.93 -0.31 0.72 16 29 H 0.06 0.57 6.56 -51.93 -0.34 0.22 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.66 7.45 -51.93 -0.39 0.28 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.36 6.06 5.66 -39.29 -0.22 5.83 16 38 H 0.03 0.52 8.06 -51.93 -0.42 0.10 16 39 H 0.07 0.99 7.44 -51.93 -0.39 0.61 16 40 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 43 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 44 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 339.73 15.07 5.12 5.12 Total: -1.00 -30.13 339.73 -9.15 -39.28 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -8.28 Total: 0.19 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: -0.68 Total: -13.92 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: 0.06 Total: -37.58 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -0.35 Total: -10.01 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.13 -9.15 -39.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339096036.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.927 kcal (2) G-P(sol) polarization free energy of solvation -30.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds