Wall clock time and date at job start Mon Mar 30 2020 07:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46926 * 2 1 4 4 H 1.09002 * 109.47097 * 55.00131 * 3 2 1 5 5 C 1.52999 * 109.47628 * 295.00334 * 3 2 1 6 6 C 1.52997 * 109.47317 * 180.02562 * 5 3 2 7 7 C 1.53000 * 109.47060 * 59.99960 * 6 5 3 8 8 C 1.53002 * 109.47233 * 299.99657 * 7 6 5 9 9 C 1.52997 * 109.46817 * 60.00194 * 8 7 6 10 10 H 1.09002 * 109.47153 * 60.00231 * 9 8 7 11 11 N 1.46905 * 109.47252 * 180.02562 * 9 8 7 12 12 C 1.46906 * 110.99723 * 275.00122 * 11 9 8 13 13 C 1.52993 * 109.46906 * 179.97438 * 12 11 9 14 14 O 1.42898 * 109.47452 * 64.99951 * 13 12 11 15 15 C 1.42895 * 114.00363 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.47148 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00125 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99687 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00451 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99520 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46928 * 60.00763 * 20 18 16 22 22 H 1.48506 * 109.46929 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47545 * 300.00037 * 20 18 16 24 24 H 1.09000 * 109.47081 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47396 * 299.99642 * 1 2 3 26 26 H 1.08998 * 109.47230 * 59.99893 * 1 2 3 27 27 H 1.09000 * 109.47396 * 240.00358 * 2 1 3 28 28 H 1.08998 * 109.47230 * 120.00107 * 2 1 3 29 29 H 1.08996 * 109.46929 * 59.99225 * 5 3 2 30 30 H 1.09002 * 109.46716 * 300.00030 * 5 3 2 31 31 H 1.09002 * 109.47153 * 299.99641 * 6 5 3 32 32 H 1.09001 * 109.46832 * 179.97438 * 6 5 3 33 33 H 1.08992 * 109.47399 * 59.99823 * 7 6 5 34 34 H 1.09004 * 109.46724 * 180.02562 * 7 6 5 35 35 H 1.08993 * 109.47662 * 180.02562 * 8 7 6 36 36 H 1.09002 * 109.47075 * 300.00932 * 8 7 6 37 37 H 1.00902 * 111.00313 * 151.04585 * 11 9 8 38 38 H 1.08994 * 109.46823 * 299.99794 * 12 11 9 39 39 H 1.09001 * 109.47053 * 59.99562 * 12 11 9 40 40 H 1.09001 * 109.46865 * 184.99966 * 13 12 11 41 41 H 1.09003 * 109.47193 * 304.99883 * 13 12 11 42 42 H 1.08996 * 109.47450 * 300.00194 * 15 14 13 43 43 H 1.09005 * 109.46850 * 60.00537 * 15 14 13 44 44 H 0.96994 * 119.99935 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6351 2.1267 -1.3073 6 6 2.1457 3.5690 -1.3075 7 6 3.6705 3.5702 -1.1821 8 6 4.0754 2.8862 0.1253 9 6 3.5648 1.4439 0.1255 10 1 3.9991 0.9046 -0.7164 11 7 3.9530 0.7872 1.3809 12 6 5.3129 0.2392 1.2898 13 6 5.6809 -0.4346 2.6132 14 8 4.8316 -1.5641 2.8250 15 6 5.0939 -2.2689 4.0401 16 6 4.1460 -3.4344 4.1594 17 1 3.4160 -3.6183 3.3851 18 6 4.2101 -4.2653 5.2578 19 7 5.0980 -4.0406 6.2016 20 14 3.0346 -5.7096 5.4061 21 1 3.2268 -6.6246 4.2524 22 1 3.3073 -6.4421 6.6689 23 1 1.6360 -5.2107 5.4148 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.5489 2.1253 -1.3968 30 1 2.0698 1.5877 -2.1491 31 1 1.7114 4.1083 -0.4656 32 1 1.8576 4.0562 -2.2390 33 1 4.1048 3.0310 -2.0239 34 1 4.0342 4.5978 -1.1818 35 1 5.1616 2.8874 0.2149 36 1 3.6410 3.4254 0.9671 37 1 3.2901 0.0696 1.6337 38 1 5.3561 -0.4936 0.4842 39 1 6.0168 1.0460 1.0852 40 1 6.7197 -0.7628 2.5772 41 1 5.5521 0.2751 3.4304 42 1 6.1205 -2.6352 4.0334 43 1 4.9532 -1.5974 4.8871 44 1 5.1433 -4.6254 6.9741 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339096036.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:20 Heat of formation + Delta-G solvation = -104.385624 kcal Electronic energy + Delta-G solvation = -19588.198588 eV Core-core repulsion = 16731.027643 eV Total energy + Delta-G solvation = -2857.170945 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.39154 -38.68855 -35.93668 -34.88372 -34.79238 -31.43687 -30.06952 -29.27387 -27.65042 -24.93263 -24.51770 -23.17204 -22.14181 -21.51560 -20.61411 -18.65154 -17.58768 -16.96711 -16.83864 -16.42097 -15.85346 -15.68007 -15.38653 -15.17494 -14.84023 -14.36147 -14.19559 -13.98540 -13.66111 -13.44322 -13.11383 -13.02788 -12.83303 -12.63853 -12.46232 -12.41737 -12.25652 -12.19836 -11.92010 -11.84538 -11.60294 -11.34781 -11.29440 -10.92111 -10.88883 -10.77157 -10.24891 -9.32341 -8.32830 -6.45641 1.39089 1.43983 1.52356 2.33759 3.00975 3.15821 3.21870 3.72017 3.79039 3.93596 4.18009 4.21554 4.28056 4.36568 4.42306 4.44841 4.49550 4.54130 4.59970 4.68395 4.74854 4.77487 4.81237 4.86078 4.92060 4.96809 5.04553 5.14558 5.16280 5.18554 5.27149 5.30856 5.35384 5.39085 5.42019 5.49408 5.53265 5.61613 5.94386 6.19622 6.45658 6.51755 6.79817 7.26261 8.79449 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.025943 B = 0.004303 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.045505 B = 6505.553696 C = 7421.963411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.128 4.128 3 C -0.082 4.082 4 H 0.068 0.932 5 C -0.108 4.108 6 C -0.118 4.118 7 C -0.115 4.115 8 C -0.104 4.104 9 C 0.092 3.908 10 H 0.037 0.963 11 N -0.696 5.696 12 C 0.077 3.923 13 C 0.055 3.945 14 O -0.408 6.408 15 C 0.211 3.789 16 C -0.549 4.549 17 H 0.062 0.938 18 C 0.007 3.993 19 N -0.931 5.931 20 Si 0.983 3.017 21 H -0.265 1.265 22 H -0.275 1.275 23 H -0.265 1.265 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.043 0.957 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.344 0.656 38 H 0.029 0.971 39 H 0.101 0.899 40 H 0.048 0.952 41 H 0.042 0.958 42 H -0.015 1.015 43 H -0.016 1.016 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.856 14.312 -16.175 22.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.166 4.166 3 C -0.101 4.101 4 H 0.086 0.914 5 C -0.146 4.146 6 C -0.155 4.155 7 C -0.153 4.153 8 C -0.142 4.142 9 C -0.018 4.018 10 H 0.055 0.945 11 N -0.331 5.331 12 C -0.053 4.053 13 C -0.023 4.023 14 O -0.328 6.328 15 C 0.136 3.864 16 C -0.586 4.586 17 H 0.080 0.920 18 C -0.192 4.192 19 N -0.570 5.570 20 Si 0.806 3.194 21 H -0.190 1.190 22 H -0.200 1.200 23 H -0.190 1.190 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.090 0.910 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.165 0.835 38 H 0.047 0.953 39 H 0.119 0.881 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.003 0.997 43 H 0.002 0.998 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.718 14.768 -15.824 22.388 hybrid contribution 0.050 -1.545 0.313 1.577 sum -5.669 13.223 -15.511 21.156 Atomic orbital electron populations 1.21751 0.94547 1.01732 1.02331 1.21632 0.97278 0.96630 1.01011 1.21273 0.93831 0.95691 0.99292 0.91365 1.21583 1.01314 0.95823 0.95864 1.21542 0.95397 0.96279 1.02284 1.21524 0.96325 1.00713 0.96741 1.21508 1.00256 0.94189 0.98257 1.21614 0.95223 0.95439 0.89504 0.94520 1.60625 1.03668 1.35522 1.33237 1.21917 0.92077 0.97065 0.94198 1.22601 0.93618 0.87930 0.98102 1.87748 1.59553 1.42688 1.42855 1.19794 0.94810 0.90441 0.81319 1.21350 1.18706 1.11726 1.06855 0.91963 1.25967 0.97739 1.01058 0.94398 1.70064 1.36344 1.40105 1.10495 0.85239 0.78596 0.77681 0.77929 1.18982 1.19954 1.18958 0.93061 0.92896 0.91014 0.92268 0.93823 0.90661 0.91987 0.92100 0.90654 0.91962 0.90911 0.92464 0.92251 0.83518 0.95254 0.88116 0.93395 0.93943 0.99744 0.99821 0.92016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 9.67 71.98 0.70 -2.31 16 2 C -0.13 -3.07 5.27 30.59 0.16 -2.91 16 3 C -0.08 -1.79 1.85 -10.79 -0.02 -1.81 16 4 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 5 C -0.11 -1.80 4.96 30.59 0.15 -1.64 16 6 C -0.12 -1.73 5.92 30.59 0.18 -1.55 16 7 C -0.12 -1.82 5.92 30.60 0.18 -1.64 16 8 C -0.10 -2.16 5.43 30.59 0.17 -2.00 16 9 C 0.09 2.22 1.97 44.92 0.09 2.31 16 10 H 0.04 0.92 7.80 -2.39 -0.02 0.90 16 11 N -0.70 -21.49 6.31 -491.56 -3.10 -24.60 16 12 C 0.08 2.39 5.90 86.30 0.51 2.90 16 13 C 0.05 2.13 6.28 71.98 0.45 2.58 16 14 O -0.41 -20.39 9.85 -148.98 -1.47 -21.85 16 15 C 0.21 12.20 5.69 71.24 0.41 12.60 16 16 C -0.55 -33.19 9.43 25.60 0.24 -32.95 16 17 H 0.06 3.70 7.81 -2.91 -0.02 3.68 16 18 C 0.01 0.40 5.46 84.66 0.46 0.87 16 19 N -0.93 -56.77 13.29 21.45 0.28 -56.48 16 20 Si 0.98 44.75 29.54 68.60 2.03 46.78 16 21 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 23 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 24 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.07 1.19 6.56 -2.39 -0.02 1.17 16 27 H 0.06 1.39 8.14 -2.39 -0.02 1.38 16 28 H 0.04 1.30 6.03 -2.39 -0.01 1.29 16 29 H 0.07 1.11 6.56 -2.39 -0.02 1.10 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16 35 H 0.06 1.20 7.45 -2.39 -0.02 1.18 16 36 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.34 12.10 5.66 -89.69 -0.51 11.59 16 38 H 0.03 0.93 8.06 -2.39 -0.02 0.91 16 39 H 0.10 2.59 7.44 -2.39 -0.02 2.57 16 40 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 42 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 43 H -0.02 -0.97 8.14 -2.38 -0.02 -0.99 16 44 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -64.99 339.73 1.85 -63.14 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 0.43 Total: 18.57 kcal Atomic # 6 Polarization: -29.23 SS G_CDS: 3.68 Total: -25.56 kcal Atomic # 7 Polarization: -78.26 SS G_CDS: -2.82 Total: -81.08 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -1.47 Total: -21.85 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -64.99 1.85 -63.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339096036.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.246 kcal (2) G-P(sol) polarization free energy of solvation -64.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds