Wall clock time and date at job start Mon Mar 30 2020 07:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47096 * 2 1 4 4 H 1.09003 * 109.47258 * 54.99745 * 3 2 1 5 5 C 1.52993 * 109.47245 * 295.00050 * 3 2 1 6 6 C 1.53005 * 109.47369 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.46837 * 59.99951 * 6 5 3 8 8 C 1.52993 * 109.47181 * 300.00164 * 7 6 5 9 9 C 1.53002 * 109.47187 * 174.99862 * 3 2 1 10 10 H 1.08998 * 109.47292 * 299.99802 * 9 3 2 11 11 N 1.46901 * 109.47009 * 60.00075 * 9 3 2 12 12 C 1.46898 * 110.99887 * 205.00067 * 11 9 3 13 13 C 1.52995 * 109.47008 * 179.97438 * 12 11 9 14 14 O 1.42902 * 109.47230 * 64.99881 * 13 12 11 15 15 C 1.42898 * 114.00186 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47171 * 180.02562 * 15 14 13 17 17 H 1.07996 * 119.99751 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00001 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00094 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99955 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46999 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.46942 * 119.99666 * 20 18 16 23 23 H 1.48504 * 109.46979 * 239.99580 * 20 18 16 24 24 H 1.09002 * 109.47039 * 60.00116 * 1 2 3 25 25 H 1.09008 * 109.47097 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47170 * 299.99874 * 1 2 3 27 27 H 1.08995 * 109.47141 * 239.99778 * 2 1 3 28 28 H 1.09002 * 109.47039 * 119.99884 * 2 1 3 29 29 H 1.08994 * 109.47283 * 299.99831 * 5 3 2 30 30 H 1.09001 * 109.47439 * 59.99903 * 5 3 2 31 31 H 1.09006 * 109.46973 * 179.97438 * 6 5 3 32 32 H 1.08994 * 109.47068 * 300.00315 * 6 5 3 33 33 H 1.09010 * 109.47108 * 60.00101 * 7 6 5 34 34 H 1.08998 * 109.47152 * 179.97438 * 7 6 5 35 35 H 1.08994 * 109.47283 * 299.99977 * 8 7 6 36 36 H 1.09001 * 109.47439 * 179.97438 * 8 7 6 37 37 H 1.00897 * 110.99874 * 328.95342 * 11 9 3 38 38 H 1.08999 * 109.47210 * 59.99783 * 12 11 9 39 39 H 1.09004 * 109.46885 * 299.99875 * 12 11 9 40 40 H 1.09001 * 109.47081 * 305.00090 * 13 12 11 41 41 H 1.08999 * 109.47384 * 184.99783 * 13 12 11 42 42 H 1.09002 * 109.47259 * 300.00293 * 15 14 13 43 43 H 1.09001 * 109.47074 * 60.00315 * 15 14 13 44 44 H 0.97000 * 120.00333 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 2.1447 3.5692 -1.3070 7 6 3.6695 3.5716 -1.1810 8 6 4.0743 2.8875 0.1263 9 6 3.5649 1.4443 0.1258 10 1 3.8532 0.9570 1.0571 11 7 4.1506 0.7178 -1.0088 12 6 5.4747 0.1831 -0.6643 13 6 6.0511 -0.5656 -1.8676 14 8 6.2815 0.3552 -2.9359 15 6 6.8229 -0.2452 -4.1142 16 6 7.0248 0.8119 -5.1692 17 1 6.7659 1.8394 -4.9606 18 6 7.5400 0.4671 -6.4008 19 7 7.8558 -0.7841 -6.6546 20 14 7.7910 1.7775 -7.7083 21 1 7.3613 3.0958 -7.1766 22 1 9.2275 1.8373 -8.0798 23 1 6.9830 1.4408 -8.9079 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 2.0699 1.5875 -2.1491 30 1 0.5489 2.1252 -1.3969 31 1 1.8567 4.0564 -2.2387 32 1 1.7098 4.1080 -0.4653 33 1 4.1045 3.0328 -2.0229 34 1 4.0325 4.5993 -1.1813 35 1 3.6394 3.4263 0.9680 36 1 5.1606 2.8888 0.2159 37 1 3.5350 -0.0166 -1.3245 38 1 5.3820 -0.5015 0.1788 39 1 6.1391 1.0040 -0.3944 40 1 5.3449 -1.3297 -2.1925 41 1 6.9924 -1.0373 -1.5853 42 1 7.7802 -0.7099 -3.8781 43 1 6.1330 -1.0028 -4.4858 44 1 8.2179 -1.0267 -7.5212 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339096037.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:24 Heat of formation + Delta-G solvation = -80.540377 kcal Electronic energy + Delta-G solvation = -19873.843138 eV Core-core repulsion = 17017.706200 eV Total energy + Delta-G solvation = -2856.136938 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.49812 -36.74626 -34.32545 -33.91308 -32.58791 -30.13381 -29.10035 -27.47987 -26.15006 -23.93366 -22.26190 -22.00473 -21.51297 -20.57589 -18.83707 -16.43813 -15.97571 -15.67332 -15.29480 -15.04770 -14.56921 -14.26124 -14.10953 -13.66749 -13.33285 -13.20636 -12.93948 -12.55434 -12.42634 -12.10194 -11.98163 -11.66168 -11.39190 -11.27134 -11.14787 -10.97048 -10.74852 -10.72997 -10.68576 -10.41234 -10.22316 -9.97263 -9.87316 -9.72927 -9.01043 -8.74538 -8.08684 -8.00448 -6.05161 -4.05720 3.33057 3.39375 3.46622 4.36128 4.41290 4.64107 4.69443 4.84648 4.97559 5.14293 5.24255 5.28113 5.31527 5.44948 5.48956 5.51578 5.55415 5.69590 5.71265 5.75777 5.79732 5.82107 5.87735 5.95515 6.03962 6.09896 6.10827 6.16765 6.18697 6.37462 6.39735 6.46630 6.49710 6.53749 6.88805 7.17455 7.35706 7.50441 7.69916 7.87417 8.23680 8.69164 9.09792 9.59093 11.06648 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.022526 B = 0.004629 C = 0.004389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.715002 B = 6047.328118 C = 6377.771058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.086 4.086 4 H 0.069 0.931 5 C -0.110 4.110 6 C -0.113 4.113 7 C -0.114 4.114 8 C -0.103 4.103 9 C 0.092 3.908 10 H 0.035 0.965 11 N -0.666 5.666 12 C 0.065 3.935 13 C 0.066 3.934 14 O -0.378 6.378 15 C 0.193 3.807 16 C -0.508 4.508 17 H 0.067 0.933 18 C 0.055 3.945 19 N -0.901 5.901 20 Si 0.906 3.094 21 H -0.270 1.270 22 H -0.283 1.283 23 H -0.283 1.283 24 H 0.059 0.941 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.088 0.912 34 H 0.048 0.952 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.338 0.662 38 H 0.030 0.970 39 H 0.076 0.924 40 H 0.032 0.968 41 H 0.038 0.962 42 H 0.001 0.999 43 H 0.002 0.998 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.567 3.174 15.301 20.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.105 4.105 4 H 0.088 0.912 5 C -0.147 4.147 6 C -0.151 4.151 7 C -0.152 4.152 8 C -0.141 4.141 9 C -0.018 4.018 10 H 0.053 0.947 11 N -0.300 5.300 12 C -0.064 4.064 13 C -0.012 4.012 14 O -0.298 6.298 15 C 0.119 3.881 16 C -0.546 4.546 17 H 0.085 0.915 18 C -0.146 4.146 19 N -0.541 5.541 20 Si 0.733 3.267 21 H -0.194 1.194 22 H -0.209 1.209 23 H -0.209 1.209 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.107 0.893 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.159 0.841 38 H 0.048 0.952 39 H 0.095 0.905 40 H 0.050 0.950 41 H 0.056 0.944 42 H 0.019 0.981 43 H 0.020 0.980 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.280 3.822 14.872 19.661 hybrid contribution 0.081 -0.595 -0.157 0.621 sum -12.199 3.227 14.714 19.384 Atomic orbital electron populations 1.21786 0.95758 1.01371 1.01866 1.21638 0.96171 0.96761 1.01775 1.21323 0.94606 0.95672 0.98902 0.91225 1.21545 0.99423 0.96106 0.97672 1.21465 0.96579 0.96348 1.00701 1.21423 0.95079 0.99422 0.99265 1.21481 1.00480 0.94568 0.97602 1.21517 0.93112 0.95234 0.91899 0.94710 1.60383 1.03648 1.31568 1.34401 1.22011 0.91354 0.98056 0.94977 1.22221 0.97547 0.92300 0.89167 1.87956 1.84572 1.33897 1.23354 1.20177 0.92104 0.94297 0.81539 1.21107 1.41612 0.95230 0.96662 0.91465 1.24944 0.95494 0.95793 0.98353 1.69978 1.44167 1.16725 1.23195 0.86311 0.77705 0.81657 0.81014 1.19445 1.20937 1.20913 0.92246 0.93025 0.93038 0.91585 0.92446 0.90550 0.92735 0.92455 0.93237 0.89302 0.93324 0.92923 0.92198 0.84135 0.95213 0.90524 0.94990 0.94429 0.98107 0.97973 0.92839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.67 37.16 0.36 -0.92 16 2 C -0.13 -1.21 5.04 -26.73 -0.13 -1.34 16 3 C -0.09 -0.90 1.96 -90.62 -0.18 -1.08 16 4 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 5 C -0.11 -1.26 4.80 -26.73 -0.13 -1.39 16 6 C -0.11 -1.34 5.92 -26.73 -0.16 -1.49 16 7 C -0.11 -1.55 5.77 -26.73 -0.15 -1.70 16 8 C -0.10 -1.29 5.54 -26.71 -0.15 -1.43 16 9 C 0.09 1.11 2.30 -67.68 -0.16 0.96 16 10 H 0.04 0.41 7.80 -51.93 -0.40 0.00 16 11 N -0.67 -9.63 4.78 -106.70 -0.51 -10.14 16 12 C 0.07 0.99 5.87 -3.83 -0.02 0.97 16 13 C 0.07 1.24 6.22 37.16 0.23 1.47 16 14 O -0.38 -9.29 10.27 -35.23 -0.36 -9.66 16 15 C 0.19 5.42 5.69 36.01 0.20 5.62 16 16 C -0.51 -15.25 9.43 -34.44 -0.32 -15.57 16 17 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 18 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -27.39 13.29 55.43 0.74 -26.66 16 20 Si 0.91 22.23 29.54 -169.99 -5.02 17.21 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H 0.06 0.51 6.57 -51.93 -0.34 0.17 16 25 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.69 6.42 -51.93 -0.33 0.35 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 1.04 7.48 -51.93 -0.39 0.65 16 30 H 0.05 0.56 6.56 -51.93 -0.34 0.22 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.09 1.51 7.61 -51.92 -0.39 1.11 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.80 7.46 -51.93 -0.39 0.42 16 37 H 0.34 4.72 6.09 -39.29 -0.24 4.48 16 38 H 0.03 0.38 8.06 -51.93 -0.42 -0.04 16 39 H 0.08 1.22 7.44 -51.93 -0.39 0.83 16 40 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 43 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 44 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 338.16 15.07 5.10 5.10 Total: -1.00 -30.84 338.16 -9.02 -39.86 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -8.25 Total: -1.29 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: -0.71 Total: -14.42 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: 0.23 Total: -36.80 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -0.36 Total: -9.66 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.84 -9.02 -39.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339096037.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.681 kcal (2) G-P(sol) polarization free energy of solvation -30.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds