Wall clock time and date at job start Mon Mar 30 2020 07:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47096 * 2 1 4 4 H 1.09003 * 109.47258 * 54.99745 * 3 2 1 5 5 C 1.52993 * 109.47245 * 295.00050 * 3 2 1 6 6 C 1.53005 * 109.47369 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.46837 * 59.99951 * 6 5 3 8 8 C 1.52993 * 109.47181 * 300.00164 * 7 6 5 9 9 C 1.53002 * 109.47187 * 174.99862 * 3 2 1 10 10 H 1.08998 * 109.47292 * 299.99802 * 9 3 2 11 11 N 1.46901 * 109.47009 * 60.00075 * 9 3 2 12 12 C 1.46898 * 110.99887 * 205.00067 * 11 9 3 13 13 C 1.52995 * 109.47008 * 179.97438 * 12 11 9 14 14 O 1.42902 * 109.47230 * 64.99881 * 13 12 11 15 15 C 1.42898 * 114.00186 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47171 * 180.02562 * 15 14 13 17 17 H 1.07996 * 119.99751 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00001 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00094 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99955 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46999 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.46942 * 119.99666 * 20 18 16 23 23 H 1.48504 * 109.46979 * 239.99580 * 20 18 16 24 24 H 1.09002 * 109.47039 * 60.00116 * 1 2 3 25 25 H 1.09008 * 109.47097 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47170 * 299.99874 * 1 2 3 27 27 H 1.08995 * 109.47141 * 239.99778 * 2 1 3 28 28 H 1.09002 * 109.47039 * 119.99884 * 2 1 3 29 29 H 1.08994 * 109.47283 * 299.99831 * 5 3 2 30 30 H 1.09001 * 109.47439 * 59.99903 * 5 3 2 31 31 H 1.09006 * 109.46973 * 179.97438 * 6 5 3 32 32 H 1.08994 * 109.47068 * 300.00315 * 6 5 3 33 33 H 1.09010 * 109.47108 * 60.00101 * 7 6 5 34 34 H 1.08998 * 109.47152 * 179.97438 * 7 6 5 35 35 H 1.08994 * 109.47283 * 299.99977 * 8 7 6 36 36 H 1.09001 * 109.47439 * 179.97438 * 8 7 6 37 37 H 1.00897 * 110.99874 * 328.95342 * 11 9 3 38 38 H 1.08999 * 109.47210 * 59.99783 * 12 11 9 39 39 H 1.09004 * 109.46885 * 299.99875 * 12 11 9 40 40 H 1.09001 * 109.47081 * 305.00090 * 13 12 11 41 41 H 1.08999 * 109.47384 * 184.99783 * 13 12 11 42 42 H 1.09002 * 109.47259 * 300.00293 * 15 14 13 43 43 H 1.09001 * 109.47074 * 60.00315 * 15 14 13 44 44 H 0.97000 * 120.00333 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 2.1447 3.5692 -1.3070 7 6 3.6695 3.5716 -1.1810 8 6 4.0743 2.8875 0.1263 9 6 3.5649 1.4443 0.1258 10 1 3.8532 0.9570 1.0571 11 7 4.1506 0.7178 -1.0088 12 6 5.4747 0.1831 -0.6643 13 6 6.0511 -0.5656 -1.8676 14 8 6.2815 0.3552 -2.9359 15 6 6.8229 -0.2452 -4.1142 16 6 7.0248 0.8119 -5.1692 17 1 6.7659 1.8394 -4.9606 18 6 7.5400 0.4671 -6.4008 19 7 7.8558 -0.7841 -6.6546 20 14 7.7910 1.7775 -7.7083 21 1 7.3613 3.0958 -7.1766 22 1 9.2275 1.8373 -8.0798 23 1 6.9830 1.4408 -8.9079 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 2.0699 1.5875 -2.1491 30 1 0.5489 2.1252 -1.3969 31 1 1.8567 4.0564 -2.2387 32 1 1.7098 4.1080 -0.4653 33 1 4.1045 3.0328 -2.0229 34 1 4.0325 4.5993 -1.1813 35 1 3.6394 3.4263 0.9680 36 1 5.1606 2.8888 0.2159 37 1 3.5350 -0.0166 -1.3245 38 1 5.3820 -0.5015 0.1788 39 1 6.1391 1.0040 -0.3944 40 1 5.3449 -1.3297 -2.1925 41 1 6.9924 -1.0373 -1.5853 42 1 7.7802 -0.7099 -3.8781 43 1 6.1330 -1.0028 -4.4858 44 1 8.2179 -1.0267 -7.5212 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339096037.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:23 Heat of formation + Delta-G solvation = -99.051513 kcal Electronic energy + Delta-G solvation = -19874.645841 eV Core-core repulsion = 17017.706200 eV Total energy + Delta-G solvation = -2856.939641 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.47783 -38.55276 -35.65875 -34.78764 -34.73396 -31.37168 -30.08734 -29.28234 -27.68494 -24.79531 -24.46962 -23.05823 -22.81208 -21.47023 -19.82758 -18.63376 -17.56479 -16.90958 -16.78634 -16.38261 -16.07594 -15.66861 -15.22218 -14.90380 -14.83116 -14.21387 -14.09748 -13.91049 -13.69749 -13.37855 -13.09988 -13.01242 -12.82932 -12.75764 -12.47313 -12.37811 -12.19221 -12.14573 -11.82740 -11.76862 -11.51700 -11.27268 -11.19013 -10.86985 -10.86178 -10.66851 -10.17161 -9.10187 -8.31373 -6.42936 1.39372 1.40902 1.55935 2.35593 3.02294 3.21970 3.32311 3.76783 3.82785 3.97123 4.25403 4.28082 4.28802 4.36343 4.43910 4.54750 4.58479 4.62789 4.65620 4.69858 4.74585 4.82264 4.84907 4.92024 4.96323 5.02385 5.05889 5.14029 5.19366 5.20970 5.28650 5.37738 5.43507 5.48948 5.54270 5.56863 5.58169 5.77479 5.98793 6.27292 6.55731 6.62652 6.88534 7.29474 8.81319 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.022526 B = 0.004629 C = 0.004389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.715002 B = 6047.328118 C = 6377.771058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.079 4.079 4 H 0.087 0.913 5 C -0.108 4.108 6 C -0.110 4.110 7 C -0.113 4.113 8 C -0.102 4.102 9 C 0.093 3.907 10 H 0.048 0.952 11 N -0.685 5.685 12 C 0.076 3.924 13 C 0.056 3.944 14 O -0.393 6.393 15 C 0.209 3.791 16 C -0.543 4.543 17 H 0.058 0.942 18 C 0.007 3.993 19 N -0.932 5.932 20 Si 0.982 3.018 21 H -0.266 1.266 22 H -0.270 1.270 23 H -0.271 1.271 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.046 0.954 34 H 0.050 0.950 35 H 0.076 0.924 36 H 0.044 0.956 37 H 0.339 0.661 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.037 0.963 41 H 0.044 0.956 42 H -0.018 1.018 43 H -0.018 1.018 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.646 3.998 16.277 21.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.098 4.098 4 H 0.105 0.895 5 C -0.145 4.145 6 C -0.148 4.148 7 C -0.151 4.151 8 C -0.140 4.140 9 C -0.016 4.016 10 H 0.066 0.934 11 N -0.319 5.319 12 C -0.053 4.053 13 C -0.021 4.021 14 O -0.313 6.313 15 C 0.134 3.866 16 C -0.581 4.581 17 H 0.076 0.924 18 C -0.191 4.191 19 N -0.571 5.571 20 Si 0.805 3.195 21 H -0.190 1.190 22 H -0.195 1.195 23 H -0.196 1.196 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.095 0.905 36 H 0.063 0.937 37 H 0.160 0.840 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.055 0.945 41 H 0.062 0.938 42 H 0.000 1.000 43 H 0.000 1.000 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.366 4.635 15.872 21.261 hybrid contribution 0.408 -0.898 -0.407 1.067 sum -12.958 3.737 15.465 20.519 Atomic orbital electron populations 1.21767 0.94762 1.01836 1.02191 1.21605 0.97005 0.96001 1.01480 1.21285 0.93353 0.96378 0.98734 0.89483 1.21505 1.00096 0.95579 0.97321 1.21449 0.95127 0.96866 1.01350 1.21355 0.96377 0.98969 0.98391 1.21495 0.99756 0.95165 0.97623 1.21579 0.94140 0.94526 0.91374 0.93430 1.60334 1.03532 1.31941 1.36134 1.21884 0.91498 0.98041 0.93854 1.22579 0.98354 0.92383 0.88793 1.87920 1.84310 1.35497 1.23576 1.19786 0.90710 0.93401 0.82741 1.21394 1.43229 0.95235 0.98211 0.92354 1.25938 0.94327 0.98375 1.00506 1.70076 1.44038 1.18760 1.24250 0.85160 0.78310 0.78388 0.77691 1.19006 1.19535 1.19578 0.92623 0.92579 0.91955 0.92932 0.91678 0.93376 0.91254 0.92973 0.91111 0.93531 0.93172 0.90543 0.93686 0.83955 0.91889 0.91391 0.94512 0.93765 1.00000 0.99999 0.92092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.67 71.98 0.70 -1.49 16 2 C -0.12 -2.13 5.04 30.59 0.15 -1.97 16 3 C -0.08 -1.48 1.96 -10.80 -0.02 -1.50 16 4 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 5 C -0.11 -2.35 4.80 30.59 0.15 -2.20 16 6 C -0.11 -2.48 5.92 30.60 0.18 -2.30 16 7 C -0.11 -3.07 5.77 30.59 0.18 -2.89 16 8 C -0.10 -2.43 5.54 30.61 0.17 -2.26 16 9 C 0.09 2.10 2.30 44.93 0.10 2.20 16 10 H 0.05 0.98 7.80 -2.39 -0.02 0.96 16 11 N -0.68 -19.68 4.78 -491.49 -2.35 -22.03 16 12 C 0.08 2.27 5.87 86.30 0.51 2.78 16 13 C 0.06 2.15 6.22 71.98 0.45 2.60 16 14 O -0.39 -20.05 10.27 -148.98 -1.53 -21.58 16 15 C 0.21 12.19 5.69 71.24 0.41 12.60 16 16 C -0.54 -33.52 9.43 25.60 0.24 -33.28 16 17 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 18 C 0.01 0.40 5.46 84.65 0.46 0.86 16 19 N -0.93 -57.21 13.29 21.45 0.28 -56.93 16 20 Si 0.98 45.62 29.54 68.60 2.03 47.65 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 22 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 23 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 24 H 0.05 0.86 6.57 -2.39 -0.02 0.84 16 25 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 26 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.05 1.05 6.42 -2.39 -0.02 1.04 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.05 1.33 7.48 -2.39 -0.02 1.31 16 30 H 0.07 1.30 6.56 -2.39 -0.02 1.29 16 31 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 32 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.05 1.65 7.61 -2.38 -0.02 1.63 16 34 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.04 1.19 7.46 -2.39 -0.02 1.17 16 37 H 0.34 9.48 6.09 -89.70 -0.55 8.94 16 38 H 0.06 1.48 8.06 -2.39 -0.02 1.46 16 39 H 0.07 2.15 7.44 -2.38 -0.02 2.13 16 40 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 42 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 43 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 44 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -67.41 338.16 2.49 -64.91 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 0.39 Total: 14.84 kcal Atomic # 6 Polarization: -30.54 SS G_CDS: 3.67 Total: -26.87 kcal Atomic # 7 Polarization: -76.89 SS G_CDS: -2.06 Total: -78.95 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -1.53 Total: -21.58 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -67.41 2.49 -64.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339096037.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.140 kcal (2) G-P(sol) polarization free energy of solvation -67.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds