Wall clock time and date at job start Mon Mar 30 2020 07:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47596 * 2 1 4 4 H 1.09001 * 109.46652 * 304.99694 * 3 2 1 5 5 C 1.53000 * 109.46886 * 64.99349 * 3 2 1 6 6 C 1.52997 * 109.47060 * 180.02562 * 5 3 2 7 7 C 1.53006 * 109.47127 * 300.00449 * 6 5 3 8 8 C 1.52997 * 109.47164 * 59.99836 * 7 6 5 9 9 C 1.52996 * 109.47302 * 184.99567 * 3 2 1 10 10 H 1.09004 * 109.47108 * 59.99942 * 9 3 2 11 11 N 1.46896 * 109.47496 * 299.99783 * 9 3 2 12 12 C 1.46901 * 111.00064 * 154.99707 * 11 9 3 13 13 C 1.53006 * 109.46986 * 180.02562 * 12 11 9 14 14 O 1.42894 * 109.47055 * 65.00255 * 13 12 11 15 15 C 1.42902 * 114.00236 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.47360 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99764 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99781 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99583 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 120.00151 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47176 * 89.99893 * 20 18 16 22 22 H 1.48494 * 109.47171 * 210.00167 * 20 18 16 23 23 H 1.48499 * 109.46706 * 329.99969 * 20 18 16 24 24 H 1.08996 * 109.47271 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46948 * 300.00334 * 1 2 3 26 26 H 1.09005 * 109.46227 * 60.00291 * 1 2 3 27 27 H 1.08998 * 109.47430 * 239.99681 * 2 1 3 28 28 H 1.09008 * 109.46731 * 119.99735 * 2 1 3 29 29 H 1.09002 * 109.47398 * 300.00496 * 5 3 2 30 30 H 1.09001 * 109.47194 * 60.00677 * 5 3 2 31 31 H 1.08998 * 109.47533 * 59.99948 * 6 5 3 32 32 H 1.08996 * 109.47853 * 180.02562 * 6 5 3 33 33 H 1.09001 * 109.47002 * 299.99574 * 7 6 5 34 34 H 1.09000 * 109.47050 * 179.97438 * 7 6 5 35 35 H 1.09002 * 109.47045 * 180.02562 * 8 7 6 36 36 H 1.09001 * 109.47375 * 59.99966 * 8 7 6 37 37 H 1.00903 * 110.99724 * 31.04743 * 11 9 3 38 38 H 1.09000 * 109.47059 * 300.00420 * 12 11 9 39 39 H 1.09000 * 109.46657 * 60.00471 * 12 11 9 40 40 H 1.08994 * 109.47011 * 185.00214 * 13 12 11 41 41 H 1.09002 * 109.46966 * 305.00422 * 13 12 11 42 42 H 1.09006 * 109.46560 * 300.00290 * 15 14 13 43 43 H 1.09001 * 109.46717 * 59.99803 * 15 14 13 44 44 H 0.97001 * 119.99613 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 -0.8419 5 6 1.6353 2.1265 1.3073 6 6 2.1448 3.5692 1.3071 7 6 3.6697 3.5715 1.1811 8 6 4.0744 2.8874 -0.1262 9 6 3.5649 1.4442 -0.1256 10 1 3.8533 0.9568 -1.0570 11 7 4.1506 0.7178 1.0089 12 6 5.4748 0.1830 0.6646 13 6 6.0511 -0.5657 1.8680 14 8 5.2426 -1.7100 2.1489 15 6 5.6961 -2.4831 3.2619 16 6 4.7751 -3.6584 3.4658 17 1 3.9284 -3.8009 2.8107 18 6 5.0141 -4.5522 4.4881 19 7 4.2107 -5.5781 4.6657 20 14 6.4790 -4.3059 5.6207 21 1 6.0737 -3.4706 6.7797 22 1 6.9576 -5.6256 6.1050 23 1 7.5702 -3.6258 4.8778 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 0.5489 2.1252 1.3968 30 1 2.0698 1.5875 2.1492 31 1 1.7100 4.1080 0.4653 32 1 1.8568 4.0565 2.2385 33 1 4.1046 3.0327 2.0230 34 1 4.0326 4.5993 1.1805 35 1 5.1608 2.8886 -0.2157 36 1 3.6395 3.4261 -0.9680 37 1 3.5350 -0.0166 1.3247 38 1 5.3820 -0.5017 -0.1785 39 1 6.1391 1.0038 0.3947 40 1 7.0685 -0.8860 1.6435 41 1 6.0610 0.0940 2.7356 42 1 6.7063 -2.8430 3.0667 43 1 5.6983 -1.8628 4.1583 44 1 4.3786 -6.2067 5.3851 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339096039.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:27 Heat of formation + Delta-G solvation = -79.445829 kcal Electronic energy + Delta-G solvation = -19896.711592 eV Core-core repulsion = 17040.622118 eV Total energy + Delta-G solvation = -2856.089474 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.52255 -37.04125 -34.34566 -33.89557 -32.58897 -30.27253 -29.14007 -27.99580 -26.47184 -23.89032 -22.08269 -21.90012 -21.53090 -20.55423 -18.87220 -16.88144 -16.09707 -15.75819 -15.34942 -15.12438 -14.62738 -14.45769 -14.11071 -13.77983 -13.35502 -13.12702 -13.08740 -12.54879 -12.43273 -12.28294 -11.93410 -11.84075 -11.58501 -11.32867 -11.26441 -11.03192 -10.89499 -10.74191 -10.69991 -10.51459 -10.25932 -9.97016 -9.86554 -9.77517 -9.18411 -8.84407 -8.46448 -8.11375 -6.11862 -4.10750 3.25199 3.32086 3.33731 4.35663 4.37386 4.66870 4.69364 4.75876 4.89359 5.16190 5.20000 5.23685 5.30055 5.39152 5.47538 5.52269 5.53606 5.61477 5.68710 5.72045 5.79259 5.80569 5.93033 5.94930 5.98626 6.06754 6.11871 6.19800 6.22551 6.27301 6.33112 6.34684 6.43926 6.46020 6.62558 6.64578 7.01060 7.31290 7.59629 7.73909 8.02057 8.66598 8.98800 9.47751 11.01162 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.023118 B = 0.004802 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.875633 B = 5829.808714 C = 6413.601601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.129 4.129 3 C -0.085 4.085 4 H 0.069 0.931 5 C -0.111 4.111 6 C -0.114 4.114 7 C -0.111 4.111 8 C -0.105 4.105 9 C 0.090 3.910 10 H 0.039 0.961 11 N -0.679 5.679 12 C 0.066 3.934 13 C 0.058 3.942 14 O -0.384 6.384 15 C 0.171 3.829 16 C -0.518 4.518 17 H 0.081 0.919 18 C 0.073 3.927 19 N -0.896 5.896 20 Si 0.876 3.124 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.267 1.267 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.048 0.952 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.047 0.953 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.356 0.644 38 H 0.033 0.967 39 H 0.074 0.926 40 H 0.040 0.960 41 H 0.047 0.953 42 H 0.001 0.999 43 H -0.001 1.001 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.343 17.617 -9.436 20.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C -0.104 4.104 4 H 0.087 0.913 5 C -0.149 4.149 6 C -0.152 4.152 7 C -0.148 4.148 8 C -0.143 4.143 9 C -0.020 4.020 10 H 0.057 0.943 11 N -0.315 5.315 12 C -0.064 4.064 13 C -0.020 4.020 14 O -0.303 6.303 15 C 0.096 3.904 16 C -0.556 4.556 17 H 0.099 0.901 18 C -0.129 4.129 19 N -0.534 5.534 20 Si 0.703 3.297 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.191 1.191 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.179 0.821 38 H 0.051 0.949 39 H 0.092 0.908 40 H 0.058 0.942 41 H 0.065 0.935 42 H 0.019 0.981 43 H 0.017 0.983 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.291 17.944 -9.124 20.260 hybrid contribution 0.825 -0.694 0.201 1.097 sum -1.466 17.250 -8.923 19.476 Atomic orbital electron populations 1.21769 0.95789 1.01657 1.01448 1.21655 0.96164 0.96243 1.02565 1.21310 0.94385 0.96120 0.98590 0.91297 1.21555 0.99794 0.95600 0.97905 1.21477 0.96211 0.96732 1.00777 1.21398 0.95533 0.99023 0.98893 1.21510 1.00167 0.94997 0.97610 1.21511 0.93452 0.94655 0.92396 0.94338 1.60548 1.04655 1.32264 1.34017 1.21962 0.91661 0.96519 0.96216 1.22380 0.93797 0.88797 0.96990 1.87841 1.52473 1.37934 1.52057 1.20568 0.95250 0.90702 0.83886 1.20884 1.12568 1.06611 1.15552 0.90053 1.24761 0.96419 0.94764 0.96983 1.69876 1.37590 1.13908 1.32046 0.86849 0.83442 0.77938 0.81515 1.19897 1.20817 1.19141 0.92718 0.92432 0.93266 0.92286 0.90905 0.92464 0.90664 0.92993 0.92548 0.90314 0.93385 0.92470 0.92635 0.82099 0.94855 0.90777 0.94205 0.93482 0.98122 0.98337 0.92385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.67 37.16 0.36 -1.26 16 2 C -0.13 -1.56 5.04 -26.73 -0.13 -1.70 16 3 C -0.09 -0.95 1.96 -90.62 -0.18 -1.13 16 4 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 5 C -0.11 -1.24 4.80 -26.73 -0.13 -1.37 16 6 C -0.11 -1.17 5.92 -26.73 -0.16 -1.33 16 7 C -0.11 -1.19 5.77 -26.73 -0.15 -1.35 16 8 C -0.10 -1.12 5.54 -26.71 -0.15 -1.26 16 9 C 0.09 1.07 2.30 -67.69 -0.16 0.92 16 10 H 0.04 0.48 7.80 -51.93 -0.40 0.07 16 11 N -0.68 -9.67 4.83 -106.70 -0.52 -10.18 16 12 C 0.07 0.96 5.90 -3.82 -0.02 0.94 16 13 C 0.06 1.03 6.28 37.16 0.23 1.26 16 14 O -0.38 -8.80 9.85 -35.23 -0.35 -9.15 16 15 C 0.17 4.36 4.76 36.01 0.17 4.53 16 16 C -0.52 -15.39 9.99 -34.44 -0.34 -15.73 16 17 H 0.08 2.63 8.06 -52.49 -0.42 2.21 16 18 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 19 N -0.90 -27.65 13.96 55.43 0.77 -26.87 16 20 Si 0.88 21.51 27.47 -169.99 -4.67 16.84 16 21 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.60 6.56 -51.93 -0.34 0.26 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.07 1.04 6.42 -51.92 -0.33 0.71 16 29 H 0.06 0.60 6.56 -51.93 -0.34 0.26 16 30 H 0.07 0.99 7.48 -51.93 -0.39 0.60 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.99 7.60 -51.93 -0.39 0.60 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.61 7.46 -51.93 -0.39 0.23 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.36 5.79 5.65 -39.29 -0.22 5.57 16 38 H 0.03 0.51 8.05 -51.93 -0.42 0.09 16 39 H 0.07 0.93 7.44 -51.93 -0.39 0.54 16 40 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.00 0.03 7.20 -51.93 -0.37 -0.35 16 43 H 0.00 -0.03 7.57 -51.93 -0.39 -0.42 16 44 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 333.84 15.07 5.03 5.03 Total: -1.00 -30.10 333.84 -8.69 -38.79 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -8.20 Total: 0.98 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: -0.76 Total: -15.44 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: 0.26 Total: -37.06 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: -0.35 Total: -9.15 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.10 -8.69 -38.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339096039.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.656 kcal (2) G-P(sol) polarization free energy of solvation -30.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds