Wall clock time and date at job start Mon Mar 30 2020 07:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47596 * 2 1 4 4 H 1.09001 * 109.46652 * 304.99694 * 3 2 1 5 5 C 1.53000 * 109.46886 * 64.99349 * 3 2 1 6 6 C 1.52997 * 109.47060 * 180.02562 * 5 3 2 7 7 C 1.53006 * 109.47127 * 300.00449 * 6 5 3 8 8 C 1.52997 * 109.47164 * 59.99836 * 7 6 5 9 9 C 1.52996 * 109.47302 * 184.99567 * 3 2 1 10 10 H 1.09004 * 109.47108 * 59.99942 * 9 3 2 11 11 N 1.46896 * 109.47496 * 299.99783 * 9 3 2 12 12 C 1.46901 * 111.00064 * 154.99707 * 11 9 3 13 13 C 1.53006 * 109.46986 * 180.02562 * 12 11 9 14 14 O 1.42894 * 109.47055 * 65.00255 * 13 12 11 15 15 C 1.42902 * 114.00236 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.47360 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99764 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99781 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99583 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 120.00151 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47176 * 89.99893 * 20 18 16 22 22 H 1.48494 * 109.47171 * 210.00167 * 20 18 16 23 23 H 1.48499 * 109.46706 * 329.99969 * 20 18 16 24 24 H 1.08996 * 109.47271 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46948 * 300.00334 * 1 2 3 26 26 H 1.09005 * 109.46227 * 60.00291 * 1 2 3 27 27 H 1.08998 * 109.47430 * 239.99681 * 2 1 3 28 28 H 1.09008 * 109.46731 * 119.99735 * 2 1 3 29 29 H 1.09002 * 109.47398 * 300.00496 * 5 3 2 30 30 H 1.09001 * 109.47194 * 60.00677 * 5 3 2 31 31 H 1.08998 * 109.47533 * 59.99948 * 6 5 3 32 32 H 1.08996 * 109.47853 * 180.02562 * 6 5 3 33 33 H 1.09001 * 109.47002 * 299.99574 * 7 6 5 34 34 H 1.09000 * 109.47050 * 179.97438 * 7 6 5 35 35 H 1.09002 * 109.47045 * 180.02562 * 8 7 6 36 36 H 1.09001 * 109.47375 * 59.99966 * 8 7 6 37 37 H 1.00903 * 110.99724 * 31.04743 * 11 9 3 38 38 H 1.09000 * 109.47059 * 300.00420 * 12 11 9 39 39 H 1.09000 * 109.46657 * 60.00471 * 12 11 9 40 40 H 1.08994 * 109.47011 * 185.00214 * 13 12 11 41 41 H 1.09002 * 109.46966 * 305.00422 * 13 12 11 42 42 H 1.09006 * 109.46560 * 300.00290 * 15 14 13 43 43 H 1.09001 * 109.46717 * 59.99803 * 15 14 13 44 44 H 0.97001 * 119.99613 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 -0.8419 5 6 1.6353 2.1265 1.3073 6 6 2.1448 3.5692 1.3071 7 6 3.6697 3.5715 1.1811 8 6 4.0744 2.8874 -0.1262 9 6 3.5649 1.4442 -0.1256 10 1 3.8533 0.9568 -1.0570 11 7 4.1506 0.7178 1.0089 12 6 5.4748 0.1830 0.6646 13 6 6.0511 -0.5657 1.8680 14 8 5.2426 -1.7100 2.1489 15 6 5.6961 -2.4831 3.2619 16 6 4.7751 -3.6584 3.4658 17 1 3.9284 -3.8009 2.8107 18 6 5.0141 -4.5522 4.4881 19 7 4.2107 -5.5781 4.6657 20 14 6.4790 -4.3059 5.6207 21 1 6.0737 -3.4706 6.7797 22 1 6.9576 -5.6256 6.1050 23 1 7.5702 -3.6258 4.8778 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 0.5489 2.1252 1.3968 30 1 2.0698 1.5875 2.1492 31 1 1.7100 4.1080 0.4653 32 1 1.8568 4.0565 2.2385 33 1 4.1046 3.0327 2.0230 34 1 4.0326 4.5993 1.1805 35 1 5.1608 2.8886 -0.2157 36 1 3.6395 3.4261 -0.9680 37 1 3.5350 -0.0166 1.3247 38 1 5.3820 -0.5017 -0.1785 39 1 6.1391 1.0038 0.3947 40 1 7.0685 -0.8860 1.6435 41 1 6.0610 0.0940 2.7356 42 1 6.7063 -2.8430 3.0667 43 1 5.6983 -1.8628 4.1583 44 1 4.3786 -6.2067 5.3851 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339096039.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:26 Heat of formation + Delta-G solvation = -97.888565 kcal Electronic energy + Delta-G solvation = -19897.511330 eV Core-core repulsion = 17040.622118 eV Total energy + Delta-G solvation = -2856.889211 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.48904 -38.71078 -35.61977 -34.81417 -34.71791 -31.50320 -30.21556 -29.70748 -27.78823 -24.81264 -24.00147 -23.06441 -22.77128 -21.48341 -19.81322 -19.06886 -17.57498 -17.00714 -16.71746 -16.44267 -16.23452 -15.73405 -15.15240 -15.00098 -14.76923 -14.40833 -14.23319 -14.14634 -13.53267 -13.40843 -13.21053 -13.11303 -12.87148 -12.71925 -12.52127 -12.34842 -12.15739 -11.96167 -11.86791 -11.81680 -11.55296 -11.36164 -11.24826 -10.93641 -10.87580 -10.67708 -10.35478 -9.22694 -8.38213 -6.45893 1.32643 1.35368 1.46161 2.28484 2.94643 3.09635 3.28471 3.75031 3.80789 3.95641 4.21861 4.25853 4.34084 4.36840 4.42352 4.50995 4.56326 4.57389 4.62999 4.65099 4.72468 4.78547 4.79999 4.90830 4.92270 4.97704 5.00950 5.06802 5.12343 5.18891 5.27817 5.35218 5.42742 5.43144 5.46270 5.52499 5.55204 5.74805 5.92822 6.24137 6.48505 6.57774 6.73886 7.18657 8.78848 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.023118 B = 0.004802 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.875633 B = 5829.808714 C = 6413.601601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.127 4.127 3 C -0.079 4.079 4 H 0.087 0.913 5 C -0.109 4.109 6 C -0.111 4.111 7 C -0.109 4.109 8 C -0.100 4.100 9 C 0.088 3.912 10 H 0.036 0.964 11 N -0.684 5.684 12 C 0.072 3.928 13 C 0.052 3.948 14 O -0.406 6.406 15 C 0.182 3.818 16 C -0.544 4.544 17 H 0.030 0.970 18 C 0.014 3.986 19 N -0.942 5.942 20 Si 0.954 3.046 21 H -0.260 1.260 22 H -0.273 1.273 23 H -0.247 1.247 24 H 0.046 0.954 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.053 0.947 28 H 0.042 0.958 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.341 0.659 38 H 0.025 0.975 39 H 0.103 0.897 40 H 0.055 0.945 41 H 0.052 0.948 42 H 0.010 0.990 43 H 0.009 0.991 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.939 19.886 -9.583 22.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.165 4.165 3 C -0.097 4.097 4 H 0.105 0.895 5 C -0.146 4.146 6 C -0.149 4.149 7 C -0.147 4.147 8 C -0.138 4.138 9 C -0.022 4.022 10 H 0.054 0.946 11 N -0.318 5.318 12 C -0.057 4.057 13 C -0.025 4.025 14 O -0.326 6.326 15 C 0.106 3.894 16 C -0.582 4.582 17 H 0.049 0.951 18 C -0.184 4.184 19 N -0.581 5.581 20 Si 0.776 3.224 21 H -0.185 1.185 22 H -0.198 1.198 23 H -0.170 1.170 24 H 0.065 0.935 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.162 0.838 38 H 0.043 0.957 39 H 0.121 0.879 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.028 0.972 43 H 0.026 0.974 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.887 20.240 -9.297 22.291 hybrid contribution 0.296 -1.406 0.168 1.447 sum -0.591 18.834 -9.129 20.938 Atomic orbital electron populations 1.21749 0.94627 1.01540 1.02446 1.21619 0.97215 0.96904 1.00798 1.21276 0.93947 0.95286 0.99214 0.89464 1.21513 1.00104 0.96166 0.96848 1.21464 0.95898 0.95866 1.01646 1.21365 0.95777 0.99480 0.98050 1.21501 1.00356 0.93802 0.98185 1.21626 0.93934 0.95314 0.91326 0.94564 1.60630 1.04369 1.31570 1.35200 1.21961 0.92380 0.96907 0.94444 1.22693 0.94162 0.87261 0.98413 1.87812 1.54018 1.39586 1.51137 1.20275 0.94219 0.89706 0.85167 1.21146 1.12366 1.09155 1.15493 0.95149 1.25813 1.00017 0.93898 0.98639 1.70031 1.39922 1.15035 1.33114 0.85621 0.79116 0.78653 0.79032 1.18465 1.19777 1.17022 0.93470 0.92186 0.91415 0.92804 0.93932 0.91750 0.93312 0.91377 0.92271 0.92581 0.91969 0.92303 0.90827 0.83840 0.95725 0.87907 0.92680 0.93014 0.97213 0.97369 0.91811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 9.67 71.98 0.70 -2.44 16 2 C -0.13 -3.17 5.04 30.59 0.15 -3.02 16 3 C -0.08 -1.67 1.96 -10.79 -0.02 -1.70 16 4 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 5 C -0.11 -2.35 4.80 30.59 0.15 -2.21 16 6 C -0.11 -2.05 5.92 30.60 0.18 -1.87 16 7 C -0.11 -2.13 5.77 30.60 0.18 -1.95 16 8 C -0.10 -1.89 5.54 30.61 0.17 -1.72 16 9 C 0.09 1.99 2.30 44.93 0.10 2.10 16 10 H 0.04 0.85 7.80 -2.38 -0.02 0.83 16 11 N -0.68 -19.42 4.83 -491.48 -2.37 -21.80 16 12 C 0.07 2.05 5.90 86.30 0.51 2.56 16 13 C 0.05 1.77 6.28 71.98 0.45 2.23 16 14 O -0.41 -18.89 9.85 -148.98 -1.47 -20.36 16 15 C 0.18 9.26 4.76 71.24 0.34 9.60 16 16 C -0.54 -33.41 9.99 25.60 0.26 -33.16 16 17 H 0.03 2.10 8.06 -2.91 -0.02 2.07 16 18 C 0.01 0.86 5.47 84.66 0.46 1.32 16 19 N -0.94 -59.61 13.96 21.45 0.30 -59.31 16 20 Si 0.95 43.81 27.47 68.60 1.88 45.69 16 21 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 23 H -0.25 -10.47 6.54 99.48 0.65 -9.82 16 24 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.06 1.24 6.56 -2.39 -0.02 1.23 16 26 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 27 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.04 1.31 6.42 -2.38 -0.02 1.30 16 29 H 0.06 1.28 6.56 -2.39 -0.02 1.27 16 30 H 0.05 1.32 7.48 -2.39 -0.02 1.30 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.06 1.36 7.60 -2.39 -0.02 1.34 16 34 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.06 1.10 7.46 -2.39 -0.02 1.08 16 36 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.34 11.59 5.65 -89.69 -0.51 11.08 16 38 H 0.02 0.74 8.05 -2.39 -0.02 0.72 16 39 H 0.10 2.34 7.44 -2.39 -0.02 2.32 16 40 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.01 0.50 7.20 -2.38 -0.02 0.48 16 43 H 0.01 0.42 7.57 -2.39 -0.02 0.40 16 44 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 Total: -1.00 -66.89 333.84 2.35 -64.55 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: 0.38 Total: 21.49 kcal Atomic # 6 Polarization: -33.89 SS G_CDS: 3.63 Total: -30.26 kcal Atomic # 7 Polarization: -79.04 SS G_CDS: -2.07 Total: -81.11 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -1.47 Total: -20.36 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.88 Total: 45.69 kcal Total: -66.89 2.35 -64.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339096039.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.343 kcal (2) G-P(sol) polarization free energy of solvation -66.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds