Wall clock time and date at job start Mon Mar 30 2020 07:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47036 * 2 1 4 4 H 1.08993 * 109.47272 * 305.00492 * 3 2 1 5 5 C 1.53006 * 109.46800 * 65.00153 * 3 2 1 6 6 C 1.53000 * 109.46800 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.47500 * 299.99863 * 6 5 3 8 8 C 1.52999 * 109.46616 * 59.99958 * 7 6 5 9 9 C 1.52994 * 109.47439 * 185.00121 * 3 2 1 10 10 H 1.09006 * 109.47365 * 300.00154 * 9 3 2 11 11 N 1.46907 * 109.47236 * 60.00086 * 9 3 2 12 12 C 1.46897 * 110.99994 * 205.00083 * 11 9 3 13 13 C 1.53006 * 109.46573 * 179.97438 * 12 11 9 14 14 O 1.42901 * 109.46804 * 65.00294 * 13 12 11 15 15 C 1.42899 * 113.99607 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.46876 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72213 * 16 15 14 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48504 * 109.47196 * 60.00645 * 20 18 16 22 22 H 1.48504 * 109.46887 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47679 * 300.00280 * 20 18 16 24 24 H 1.08999 * 109.47635 * 59.99808 * 1 2 3 25 25 H 1.09011 * 109.46961 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47093 * 299.99168 * 1 2 3 27 27 H 1.09001 * 109.47093 * 240.00832 * 2 1 3 28 28 H 1.08999 * 109.47635 * 120.00192 * 2 1 3 29 29 H 1.09001 * 109.47275 * 300.00116 * 5 3 2 30 30 H 1.08993 * 109.46931 * 60.00130 * 5 3 2 31 31 H 1.08993 * 109.47272 * 60.00339 * 6 5 3 32 32 H 1.09004 * 109.47216 * 180.02562 * 6 5 3 33 33 H 1.08994 * 109.47203 * 180.02562 * 7 6 5 34 34 H 1.09001 * 109.46976 * 300.00377 * 7 6 5 35 35 H 1.09001 * 109.46909 * 180.02562 * 8 7 6 36 36 H 1.09001 * 109.47106 * 60.00499 * 8 7 6 37 37 H 1.00896 * 110.99558 * 81.04399 * 11 9 3 38 38 H 1.08997 * 109.47142 * 60.00213 * 12 11 9 39 39 H 1.08995 * 109.47294 * 299.99820 * 12 11 9 40 40 H 1.08995 * 109.47721 * 304.99997 * 13 12 11 41 41 H 1.09001 * 109.46499 * 184.99873 * 13 12 11 42 42 H 1.09004 * 109.47206 * 60.00168 * 15 14 13 43 43 H 1.08994 * 109.47548 * 299.99825 * 15 14 13 44 44 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8417 5 6 1.6351 2.1265 1.3074 6 6 2.1446 3.5692 1.3072 7 6 3.6694 3.5717 1.1811 8 6 4.0741 2.8877 -0.1262 9 6 3.5647 1.4444 -0.1257 10 1 3.9994 0.9054 0.7161 11 7 3.9534 0.7877 -1.3810 12 6 5.3135 0.2403 -1.2896 13 6 5.6815 -0.4347 -2.6125 14 8 5.7381 0.5477 -3.6488 15 6 6.0764 0.0192 -4.9326 16 6 6.1067 1.1363 -5.9437 17 1 5.8897 2.1487 -5.6364 18 6 6.4175 0.8669 -7.2597 19 7 6.6821 -0.3658 -7.6337 20 14 6.4624 2.2528 -8.5113 21 1 7.4767 3.2572 -8.1016 22 1 6.8187 1.7044 -9.8445 23 1 5.1272 2.8987 -8.5830 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 0.5488 2.1251 1.3971 30 1 2.0698 1.5874 2.1491 31 1 1.7095 4.1080 0.4655 32 1 1.8566 4.0564 2.2388 33 1 4.0323 4.5995 1.1814 34 1 4.1044 3.0329 2.0229 35 1 5.1604 2.8890 -0.2158 36 1 3.6391 3.4265 -0.9680 37 1 3.8704 1.4217 -2.1615 38 1 5.3568 -0.4924 -0.4839 39 1 6.0170 1.0474 -1.0851 40 1 4.9280 -1.1820 -2.8611 41 1 6.6540 -0.9173 -2.5158 42 1 5.3314 -0.7190 -5.2296 43 1 7.0572 -0.4538 -4.8840 44 1 6.9004 -0.5554 -8.5597 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339096041.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:29 Heat of formation + Delta-G solvation = -88.717067 kcal Electronic energy + Delta-G solvation = -19494.821969 eV Core-core repulsion = 16638.330464 eV Total energy + Delta-G solvation = -2856.491505 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.37429 -36.91342 -34.66936 -33.89260 -32.66701 -30.20732 -29.09433 -27.40184 -26.13942 -23.82941 -22.36290 -21.96713 -21.19445 -20.63042 -19.78618 -16.44393 -15.89546 -15.62289 -15.36127 -14.77657 -14.55987 -14.40266 -14.13019 -13.79999 -13.58801 -13.24391 -13.09458 -12.74421 -12.61643 -12.01771 -11.67962 -11.59191 -11.46187 -11.31934 -11.16275 -11.02400 -10.82484 -10.81231 -10.73029 -10.57035 -10.40536 -10.19625 -10.07612 -9.84156 -9.10452 -8.80281 -8.15134 -8.04984 -6.09666 -4.11465 3.32580 3.35341 3.39038 4.32620 4.35988 4.59241 4.71199 4.91845 4.97326 5.06237 5.12506 5.26718 5.27106 5.35458 5.42501 5.43521 5.47729 5.58355 5.63293 5.70206 5.72180 5.80395 5.93906 5.97472 5.99660 6.05002 6.09683 6.12152 6.18885 6.23315 6.26549 6.31475 6.41574 6.51307 6.59172 7.13288 7.33808 7.45881 7.73808 7.79896 8.16922 8.59863 9.01452 9.53283 11.01840 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.024059 B = 0.003973 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.545273 B = 7046.338495 C = 7281.849470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.073 4.073 4 H 0.069 0.931 5 C -0.115 4.115 6 C -0.120 4.120 7 C -0.114 4.114 8 C -0.150 4.150 9 C 0.093 3.907 10 H 0.071 0.929 11 N -0.680 5.680 12 C 0.067 3.933 13 C 0.062 3.938 14 O -0.399 6.399 15 C 0.198 3.802 16 C -0.515 4.515 17 H 0.065 0.935 18 C 0.057 3.943 19 N -0.899 5.899 20 Si 0.908 3.092 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.275 1.275 24 H 0.052 0.948 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.081 0.919 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.355 0.645 38 H 0.072 0.928 39 H 0.033 0.967 40 H 0.046 0.954 41 H 0.038 0.962 42 H 0.006 0.994 43 H 0.003 0.997 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.000 3.523 18.731 21.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.093 4.093 4 H 0.087 0.913 5 C -0.153 4.153 6 C -0.158 4.158 7 C -0.152 4.152 8 C -0.190 4.190 9 C -0.017 4.017 10 H 0.089 0.911 11 N -0.312 5.312 12 C -0.063 4.063 13 C -0.016 4.016 14 O -0.319 6.319 15 C 0.123 3.877 16 C -0.553 4.553 17 H 0.083 0.917 18 C -0.144 4.144 19 N -0.538 5.538 20 Si 0.735 3.265 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.200 1.200 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.099 0.901 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.175 0.825 38 H 0.091 0.909 39 H 0.051 0.949 40 H 0.064 0.936 41 H 0.056 0.944 42 H 0.024 0.976 43 H 0.021 0.979 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.274 2.989 18.730 21.113 hybrid contribution 0.756 1.134 -0.851 1.607 sum -8.518 4.123 17.879 20.229 Atomic orbital electron populations 1.21839 0.96807 1.01076 1.01314 1.21455 0.94582 0.96271 1.02687 1.21110 0.94550 0.96332 0.97261 0.91270 1.21643 1.00502 0.95361 0.97756 1.21551 0.95783 0.97048 1.01395 1.21465 0.95899 1.00213 0.97666 1.22298 1.01049 0.97487 0.98125 1.21587 0.95137 0.92046 0.92964 0.91106 1.60572 1.24778 1.40822 1.04980 1.21955 0.89263 0.98343 0.96702 1.22299 0.98679 0.92236 0.88363 1.87786 1.91302 1.33969 1.18832 1.20159 0.94142 0.95154 0.78210 1.21016 1.47367 0.94649 0.92301 0.91713 1.24943 0.95162 0.96086 0.98258 1.69957 1.47269 1.18716 1.17824 0.86406 0.78697 0.81639 0.79776 1.20075 1.21150 1.20008 0.92917 0.93254 0.93207 0.90065 0.93022 0.91832 0.92287 0.92037 0.92424 0.92354 0.92282 0.92026 0.91605 0.82537 0.90932 0.94900 0.93623 0.94350 0.97648 0.97891 0.92611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.67 37.16 0.36 -1.13 16 2 C -0.11 -1.24 5.32 -26.73 -0.14 -1.38 16 3 C -0.07 -0.80 1.90 -90.62 -0.17 -0.97 16 4 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 5 C -0.11 -1.05 4.96 -26.73 -0.13 -1.19 16 6 C -0.12 -1.08 5.92 -26.73 -0.16 -1.24 16 7 C -0.11 -1.10 5.92 -26.73 -0.16 -1.26 16 8 C -0.15 -1.75 5.17 -26.71 -0.14 -1.88 16 9 C 0.09 1.11 1.91 -67.69 -0.13 0.98 16 10 H 0.07 0.84 7.80 -51.93 -0.40 0.43 16 11 N -0.68 -9.96 5.40 -106.70 -0.58 -10.53 16 12 C 0.07 1.01 5.90 -3.82 -0.02 0.99 16 13 C 0.06 1.17 6.28 37.16 0.23 1.40 16 14 O -0.40 -9.57 9.85 -35.23 -0.35 -9.91 16 15 C 0.20 5.48 5.69 36.01 0.20 5.68 16 16 C -0.52 -15.25 9.43 -34.44 -0.32 -15.57 16 17 H 0.06 1.89 7.81 -52.49 -0.41 1.48 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 20 Si 0.91 21.95 29.54 -169.99 -5.02 16.93 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.46 8.14 -51.92 -0.42 0.03 16 26 H 0.05 0.43 6.56 -51.93 -0.34 0.09 16 27 H 0.08 1.06 7.45 -51.93 -0.39 0.67 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.55 6.56 -51.93 -0.34 0.21 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.77 7.46 -51.93 -0.39 0.38 16 36 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 37 H 0.35 5.90 8.03 -39.29 -0.32 5.58 16 38 H 0.07 0.95 8.05 -51.93 -0.42 0.53 16 39 H 0.03 0.51 7.44 -51.93 -0.39 0.12 16 40 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 43 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 44 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 342.39 15.07 5.16 5.16 Total: -1.00 -29.80 342.39 -9.17 -38.97 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -8.44 Total: -0.23 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -0.68 Total: -14.02 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.16 Total: -36.90 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: -0.35 Total: -9.91 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.80 -9.17 -38.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339096041.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.746 kcal (2) G-P(sol) polarization free energy of solvation -29.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds