Wall clock time and date at job start Mon Mar 30 2020 06:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47065 * 2 1 4 4 C 1.52994 * 109.47021 * 120.00364 * 2 1 3 5 5 H 1.09003 * 109.53710 * 300.09810 * 4 2 1 6 6 C 1.53118 * 109.50439 * 179.97438 * 4 2 1 7 7 C 1.53121 * 109.16359 * 182.40253 * 6 4 2 8 8 C 1.53041 * 109.27635 * 57.65380 * 7 6 4 9 9 N 1.46849 * 109.52504 * 300.82001 * 8 7 6 10 10 C 1.46894 * 111.00276 * 185.83693 * 9 8 7 11 11 C 1.53009 * 109.46764 * 66.05023 * 10 9 8 12 12 O 1.42899 * 109.47113 * 64.99856 * 11 10 9 13 13 C 1.42903 * 113.99629 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.46878 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47294 * 60.00559 * 18 16 14 20 20 H 1.48503 * 109.46954 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47431 * 300.00157 * 18 16 14 22 22 C 1.46848 * 111.19670 * 61.74351 * 9 8 7 23 23 H 1.08994 * 109.46756 * 59.99935 * 1 2 3 24 24 H 1.08994 * 109.46951 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46594 * 300.00242 * 1 2 3 26 26 H 1.09003 * 109.46520 * 239.99961 * 2 1 3 27 27 H 1.09008 * 109.46662 * 180.02562 * 3 2 1 28 28 H 1.08994 * 109.47387 * 299.99678 * 3 2 1 29 29 H 1.08999 * 109.47031 * 60.00757 * 3 2 1 30 30 H 1.08997 * 109.52544 * 62.49431 * 6 4 2 31 31 H 1.09006 * 109.52153 * 302.30772 * 6 4 2 32 32 H 1.08994 * 109.50223 * 297.71416 * 7 6 4 33 33 H 1.08998 * 109.50450 * 177.59395 * 7 6 4 34 34 H 1.09000 * 109.46488 * 180.80570 * 8 7 6 35 35 H 1.08995 * 109.45432 * 60.83106 * 8 7 6 36 36 H 1.09000 * 109.47283 * 306.04972 * 10 9 8 37 37 H 1.09002 * 109.47562 * 186.04292 * 10 9 8 38 38 H 1.09007 * 109.46516 * 304.99789 * 11 10 9 39 39 H 1.09004 * 109.47113 * 185.00258 * 11 10 9 40 40 H 1.09002 * 109.47382 * 59.99956 * 13 12 11 41 41 H 1.09001 * 109.46938 * 299.99942 * 13 12 11 42 42 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 43 43 H 1.09002 * 109.46329 * 58.27049 * 22 9 8 44 44 H 1.09001 * 109.46247 * 178.24241 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6758 -0.2094 2.1399 6 6 3.5712 -0.7223 1.2496 7 6 4.0730 -1.4976 2.4710 8 6 3.5078 -2.9194 2.4341 9 7 2.0403 -2.8644 2.4358 10 6 1.4631 -4.2111 2.5404 11 6 1.8066 -4.8084 3.9066 12 8 1.1718 -4.0442 4.9337 13 6 1.4300 -4.5205 6.2561 14 6 0.7161 -3.6450 7.2536 15 1 0.1242 -2.8088 6.9119 16 6 0.8179 -3.9121 8.6024 17 7 1.5383 -4.9306 9.0185 18 14 -0.0676 -2.8273 9.8387 19 1 -1.5284 -2.8662 9.5746 20 1 0.2008 -3.3221 11.2130 21 1 0.4215 -1.4309 9.7117 22 6 1.5338 -2.1656 1.2478 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5139 0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 3.1301 1.4424 -0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6768 1.9562 0.8900 30 1 3.9362 0.3038 1.2944 31 1 3.9354 -1.2001 0.3401 32 1 3.7411 -0.9976 3.3809 33 1 5.1621 -1.5384 2.4540 34 1 3.8516 -3.4697 3.3099 35 1 3.8513 -3.4232 1.5307 36 1 1.8731 -4.8442 1.7536 37 1 0.3802 -4.1518 2.4318 38 1 2.8867 -4.7859 4.0517 39 1 1.4554 -5.8394 3.9510 40 1 2.5022 -4.4917 6.4499 41 1 1.0712 -5.5455 6.3496 42 1 1.6101 -5.1184 9.9675 43 1 1.8866 -2.6731 0.3499 44 1 0.4439 -2.1684 1.2619 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339112324.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:54 Heat of formation + Delta-G solvation = -71.144632 kcal Electronic energy + Delta-G solvation = -19718.815681 eV Core-core repulsion = 16863.086174 eV Total energy + Delta-G solvation = -2855.729507 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.44695 -36.89430 -35.54882 -33.01062 -32.44440 -29.93262 -28.67267 -27.39562 -26.58728 -24.02640 -23.03310 -22.21516 -21.34530 -19.83347 -19.60587 -16.35897 -16.20700 -15.55190 -15.29473 -14.60357 -14.42911 -14.26722 -14.06794 -13.98742 -13.57182 -13.38760 -13.06080 -12.59474 -12.43963 -12.17659 -11.98318 -11.68258 -11.58290 -11.28925 -11.09186 -10.97461 -10.81382 -10.75870 -10.67226 -10.52832 -10.48010 -10.07829 -9.99071 -9.79046 -9.02272 -8.71609 -8.06768 -7.94780 -6.04096 -4.04806 3.37007 3.39046 3.43587 4.05294 4.41198 4.65592 4.73886 4.80700 4.98024 5.05047 5.15296 5.23800 5.32311 5.42201 5.46429 5.51993 5.53808 5.60900 5.63106 5.68348 5.76849 5.79401 5.84252 5.88391 5.95238 6.02225 6.04582 6.07156 6.11868 6.16787 6.23625 6.34832 6.37205 6.40729 6.56047 7.18428 7.38329 7.40451 7.51717 7.87746 8.24732 8.70594 9.10083 9.59792 11.07652 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.022920 B = 0.004379 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.332942 B = 6393.162086 C = 6823.992790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.090 4.090 3 C -0.148 4.148 4 C -0.080 4.080 5 H 0.082 0.918 6 C -0.114 4.114 7 C -0.117 4.117 8 C 0.054 3.946 9 N -0.523 5.523 10 C 0.062 3.938 11 C 0.066 3.934 12 O -0.379 6.379 13 C 0.194 3.806 14 C -0.510 4.510 15 H 0.066 0.934 16 C 0.055 3.945 17 N -0.901 5.901 18 Si 0.907 3.093 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.063 3.937 23 H 0.050 0.950 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.024 0.976 36 H 0.036 0.964 37 H 0.079 0.921 38 H 0.036 0.964 39 H 0.037 0.963 40 H 0.002 0.998 41 H 0.001 0.999 42 H 0.263 0.737 43 H 0.024 0.976 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.041 7.296 -19.115 20.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.109 4.109 3 C -0.205 4.205 4 C -0.099 4.099 5 H 0.100 0.900 6 C -0.152 4.152 7 C -0.155 4.155 8 C -0.073 4.073 9 N -0.248 5.248 10 C -0.066 4.066 11 C -0.012 4.012 12 O -0.298 6.298 13 C 0.120 3.880 14 C -0.548 4.548 15 H 0.084 0.916 16 C -0.145 4.145 17 N -0.541 5.541 18 Si 0.734 3.266 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.065 4.065 23 H 0.069 0.931 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.042 0.958 36 H 0.054 0.946 37 H 0.098 0.902 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.020 0.980 41 H 0.019 0.981 42 H 0.073 0.927 43 H 0.042 0.958 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.831 7.619 -18.561 20.262 hybrid contribution 0.064 -0.354 0.114 0.378 sum 2.896 7.264 -18.447 20.036 Atomic orbital electron populations 1.21897 0.95263 1.01931 1.01618 1.21110 0.95779 0.96094 0.97902 1.21875 1.01071 0.95973 1.01561 1.21242 0.95157 0.95300 0.98209 0.89979 1.21668 0.95399 1.00148 0.97953 1.21577 0.99205 0.95594 0.99150 1.22125 0.87833 0.97150 1.00225 1.61753 1.06351 1.17681 1.38971 1.22111 1.00421 0.88430 0.95590 1.22268 0.96366 0.93871 0.88667 1.87949 1.71879 1.54323 1.15691 1.20162 0.95505 0.94546 0.77796 1.21033 1.30164 1.13467 0.90129 0.91593 1.24939 0.95696 0.95662 0.98235 1.69959 1.40285 1.28433 1.15399 0.86413 0.80041 0.80559 0.79556 1.20055 1.21237 1.20028 1.22157 0.99982 0.93917 0.90477 0.93123 0.92420 0.92381 0.91708 0.92515 0.93096 0.92547 0.91801 0.92771 0.90635 0.91937 0.90300 0.95829 0.94638 0.90230 0.94608 0.94452 0.97988 0.98092 0.92723 0.95821 0.90646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 8.84 37.16 0.33 -1.07 16 2 C -0.09 -0.85 2.51 -90.62 -0.23 -1.08 16 3 C -0.15 -1.27 8.84 37.15 0.33 -0.94 16 4 C -0.08 -0.93 1.94 -90.54 -0.18 -1.11 16 5 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 6 C -0.11 -1.25 4.86 -26.61 -0.13 -1.38 16 7 C -0.12 -1.50 6.09 -26.65 -0.16 -1.66 16 8 C 0.05 0.78 5.30 -3.83 -0.02 0.76 16 9 N -0.52 -8.25 4.60 -234.66 -1.08 -9.33 16 10 C 0.06 0.99 5.34 -3.82 -0.02 0.97 16 11 C 0.07 1.28 6.00 37.16 0.22 1.51 16 12 O -0.38 -9.52 10.27 -35.23 -0.36 -9.88 16 13 C 0.19 5.51 5.69 36.01 0.20 5.71 16 14 C -0.51 -15.43 9.43 -34.44 -0.32 -15.76 16 15 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 17 N -0.90 -27.51 13.29 55.43 0.74 -26.77 16 18 Si 0.91 22.32 29.54 -169.99 -5.02 17.30 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 21 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 22 C 0.06 0.81 4.37 -3.83 -0.02 0.79 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.06 0.55 6.46 -51.93 -0.34 0.21 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.47 6.49 -51.92 -0.34 0.13 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.64 6.58 -51.93 -0.34 0.29 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 1.24 6.13 -51.93 -0.32 0.93 16 35 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.04 0.48 8.12 -51.93 -0.42 0.06 16 37 H 0.08 1.26 7.98 -51.93 -0.41 0.85 16 38 H 0.04 0.68 6.23 -51.93 -0.32 0.35 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 41 H 0.00 0.04 8.14 -51.93 -0.42 -0.39 16 42 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 44 H 0.08 0.98 6.35 -51.93 -0.33 0.65 16 LS Contribution 338.15 15.07 5.10 5.10 Total: -1.00 -31.60 338.15 -9.00 -40.60 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -8.29 Total: -5.29 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -0.09 Total: -11.72 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: -0.34 Total: -36.11 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: -0.36 Total: -9.88 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.60 -9.00 -40.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339112324.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.541 kcal (2) G-P(sol) polarization free energy of solvation -31.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds