Wall clock time and date at job start Mon Mar 30 2020 06:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47065 * 2 1 4 4 C 1.52994 * 109.47021 * 120.00364 * 2 1 3 5 5 H 1.09003 * 109.53710 * 300.09810 * 4 2 1 6 6 C 1.53118 * 109.50439 * 179.97438 * 4 2 1 7 7 C 1.53121 * 109.16359 * 182.40253 * 6 4 2 8 8 C 1.53041 * 109.27635 * 57.65380 * 7 6 4 9 9 N 1.46849 * 109.52504 * 300.82001 * 8 7 6 10 10 C 1.46894 * 111.00276 * 185.83693 * 9 8 7 11 11 C 1.53009 * 109.46764 * 66.05023 * 10 9 8 12 12 O 1.42899 * 109.47113 * 64.99856 * 11 10 9 13 13 C 1.42903 * 113.99629 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.46878 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47294 * 60.00559 * 18 16 14 20 20 H 1.48503 * 109.46954 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47431 * 300.00157 * 18 16 14 22 22 C 1.46848 * 111.19670 * 61.74351 * 9 8 7 23 23 H 1.08994 * 109.46756 * 59.99935 * 1 2 3 24 24 H 1.08994 * 109.46951 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46594 * 300.00242 * 1 2 3 26 26 H 1.09003 * 109.46520 * 239.99961 * 2 1 3 27 27 H 1.09008 * 109.46662 * 180.02562 * 3 2 1 28 28 H 1.08994 * 109.47387 * 299.99678 * 3 2 1 29 29 H 1.08999 * 109.47031 * 60.00757 * 3 2 1 30 30 H 1.08997 * 109.52544 * 62.49431 * 6 4 2 31 31 H 1.09006 * 109.52153 * 302.30772 * 6 4 2 32 32 H 1.08994 * 109.50223 * 297.71416 * 7 6 4 33 33 H 1.08998 * 109.50450 * 177.59395 * 7 6 4 34 34 H 1.09000 * 109.46488 * 180.80570 * 8 7 6 35 35 H 1.08995 * 109.45432 * 60.83106 * 8 7 6 36 36 H 1.09000 * 109.47283 * 306.04972 * 10 9 8 37 37 H 1.09002 * 109.47562 * 186.04292 * 10 9 8 38 38 H 1.09007 * 109.46516 * 304.99789 * 11 10 9 39 39 H 1.09004 * 109.47113 * 185.00258 * 11 10 9 40 40 H 1.09002 * 109.47382 * 59.99956 * 13 12 11 41 41 H 1.09001 * 109.46938 * 299.99942 * 13 12 11 42 42 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 43 43 H 1.09002 * 109.46329 * 58.27049 * 22 9 8 44 44 H 1.09001 * 109.46247 * 178.24241 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6758 -0.2094 2.1399 6 6 3.5712 -0.7223 1.2496 7 6 4.0730 -1.4976 2.4710 8 6 3.5078 -2.9194 2.4341 9 7 2.0403 -2.8644 2.4358 10 6 1.4631 -4.2111 2.5404 11 6 1.8066 -4.8084 3.9066 12 8 1.1718 -4.0442 4.9337 13 6 1.4300 -4.5205 6.2561 14 6 0.7161 -3.6450 7.2536 15 1 0.1242 -2.8088 6.9119 16 6 0.8179 -3.9121 8.6024 17 7 1.5383 -4.9306 9.0185 18 14 -0.0676 -2.8273 9.8387 19 1 -1.5284 -2.8662 9.5746 20 1 0.2008 -3.3221 11.2130 21 1 0.4215 -1.4309 9.7117 22 6 1.5338 -2.1656 1.2478 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5139 0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 3.1301 1.4424 -0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6768 1.9562 0.8900 30 1 3.9362 0.3038 1.2944 31 1 3.9354 -1.2001 0.3401 32 1 3.7411 -0.9976 3.3809 33 1 5.1621 -1.5384 2.4540 34 1 3.8516 -3.4697 3.3099 35 1 3.8513 -3.4232 1.5307 36 1 1.8731 -4.8442 1.7536 37 1 0.3802 -4.1518 2.4318 38 1 2.8867 -4.7859 4.0517 39 1 1.4554 -5.8394 3.9510 40 1 2.5022 -4.4917 6.4499 41 1 1.0712 -5.5455 6.3496 42 1 1.6101 -5.1184 9.9675 43 1 1.8866 -2.6731 0.3499 44 1 0.4439 -2.1684 1.2619 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339112324.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:54 Heat of formation + Delta-G solvation = -90.860109 kcal Electronic energy + Delta-G solvation = -19719.670608 eV Core-core repulsion = 16863.086174 eV Total energy + Delta-G solvation = -2856.584435 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.49902 -38.56745 -36.75830 -34.93240 -33.85343 -31.08842 -30.06999 -28.78894 -27.98250 -25.17475 -24.48493 -24.01220 -22.55676 -20.89492 -20.50598 -18.60626 -17.51203 -17.36457 -16.57755 -16.21480 -15.90639 -15.47692 -15.23839 -15.08266 -14.73432 -14.62629 -14.43190 -13.77979 -13.63394 -13.45561 -13.21476 -13.00722 -12.87936 -12.74920 -12.63196 -12.32285 -12.23240 -12.06691 -11.93985 -11.85731 -11.68141 -11.36704 -11.27953 -10.94394 -10.89014 -10.82677 -10.17000 -9.10412 -8.31308 -6.43417 1.39318 1.44598 1.52940 2.35489 2.92974 3.02195 3.24769 3.76889 3.87887 3.91877 4.09332 4.17910 4.28789 4.31091 4.33757 4.43776 4.52182 4.59726 4.61726 4.67751 4.69621 4.81660 4.83341 4.86264 4.94760 4.98978 5.01433 5.04626 5.08942 5.14089 5.18540 5.20525 5.27890 5.34999 5.42937 5.55251 5.55809 5.64729 5.97991 6.20550 6.30560 6.57620 6.86813 7.28822 8.81040 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.022920 B = 0.004379 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.332942 B = 6393.162086 C = 6823.992790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.084 4.084 3 C -0.146 4.146 4 C -0.078 4.078 5 H 0.054 0.946 6 C -0.108 4.108 7 C -0.117 4.117 8 C 0.055 3.945 9 N -0.553 5.553 10 C 0.071 3.929 11 C 0.057 3.943 12 O -0.395 6.395 13 C 0.210 3.790 14 C -0.547 4.547 15 H 0.059 0.941 16 C 0.007 3.993 17 N -0.932 5.932 18 Si 0.983 3.017 19 H -0.265 1.265 20 H -0.273 1.273 21 H -0.267 1.267 22 C 0.065 3.935 23 H 0.064 0.936 24 H 0.054 0.946 25 H 0.045 0.955 26 H 0.077 0.923 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.046 0.954 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.047 0.953 33 H 0.080 0.920 34 H 0.055 0.945 35 H 0.044 0.956 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.037 0.963 39 H 0.046 0.954 40 H -0.019 1.019 41 H -0.017 1.017 42 H 0.271 0.729 43 H 0.040 0.960 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.954 8.308 -20.386 22.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.103 4.103 3 C -0.203 4.203 4 C -0.097 4.097 5 H 0.073 0.927 6 C -0.145 4.145 7 C -0.154 4.154 8 C -0.073 4.073 9 N -0.279 5.279 10 C -0.057 4.057 11 C -0.020 4.020 12 O -0.314 6.314 13 C 0.135 3.865 14 C -0.584 4.584 15 H 0.077 0.923 16 C -0.191 4.191 17 N -0.571 5.571 18 Si 0.805 3.195 19 H -0.189 1.189 20 H -0.198 1.198 21 H -0.191 1.191 22 C -0.062 4.062 23 H 0.083 0.917 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.095 0.905 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.055 0.945 39 H 0.064 0.936 40 H -0.002 1.002 41 H 0.001 0.999 42 H 0.080 0.920 43 H 0.058 0.942 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.750 8.627 -19.860 21.826 hybrid contribution 0.134 -0.725 0.459 0.868 sum 2.884 7.902 -19.401 21.146 Atomic orbital electron populations 1.21898 0.95319 1.01773 1.01737 1.21069 0.95708 0.96495 0.96992 1.21864 1.01437 0.95287 1.01749 1.21208 0.95752 0.94452 0.98248 0.92715 1.21635 0.94707 1.00672 0.97474 1.21574 1.00239 0.94712 0.98923 1.22113 0.87204 0.97994 0.99982 1.61705 1.07290 1.17764 1.41095 1.22017 1.00560 0.89285 0.93851 1.22621 0.96232 0.94241 0.88950 1.87904 1.72706 1.55526 1.15313 1.19776 0.93766 0.93408 0.79564 1.21344 1.31400 1.14131 0.91540 0.92287 1.25954 0.96056 0.97006 1.00109 1.70066 1.40909 1.29746 1.16378 0.85248 0.78941 0.78511 0.76787 1.18945 1.19782 1.19146 1.22186 0.99753 0.94435 0.89870 0.91680 0.92742 0.93583 0.90508 0.91922 0.91835 0.93463 0.90620 0.91162 0.93453 0.90193 0.92695 0.93840 0.91430 0.90412 0.94468 0.93572 1.00175 0.99894 0.92045 0.94179 0.91092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 8.84 71.98 0.64 -1.96 16 2 C -0.08 -1.42 2.51 -10.79 -0.03 -1.45 16 3 C -0.15 -2.21 8.84 71.98 0.64 -1.58 16 4 C -0.08 -1.72 1.94 -10.74 -0.02 -1.74 16 5 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 6 C -0.11 -2.15 4.86 30.67 0.15 -2.00 16 7 C -0.12 -2.90 6.09 30.65 0.19 -2.71 16 8 C 0.05 1.53 5.30 86.33 0.46 1.99 16 9 N -0.55 -17.25 4.60 -896.33 -4.13 -21.37 16 10 C 0.07 2.19 5.34 86.31 0.46 2.65 16 11 C 0.06 2.24 6.00 71.99 0.43 2.67 16 12 O -0.39 -20.52 10.27 -148.98 -1.53 -22.05 16 13 C 0.21 12.39 5.69 71.24 0.41 12.80 16 14 C -0.55 -33.93 9.43 25.60 0.24 -33.69 16 15 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 16 C 0.01 0.42 5.46 84.66 0.46 0.88 16 17 N -0.93 -57.45 13.29 21.45 0.28 -57.17 16 18 Si 0.98 45.64 29.54 68.60 2.03 47.67 16 19 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 20 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 22 C 0.06 1.59 4.37 86.33 0.38 1.97 16 23 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.05 0.96 6.46 -2.39 -0.02 0.95 16 25 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.06 0.87 6.49 -2.38 -0.02 0.86 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.08 1.35 6.58 -2.39 -0.02 1.33 16 31 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.05 1.77 6.13 -2.39 -0.01 1.76 16 35 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.07 1.68 8.12 -2.39 -0.02 1.66 16 37 H 0.08 2.42 7.98 -2.39 -0.02 2.40 16 38 H 0.04 1.45 6.23 -2.38 -0.01 1.44 16 39 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 40 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 41 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 42 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 43 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.07 1.79 6.35 -2.39 -0.02 1.77 16 Total: -1.00 -68.73 338.15 1.98 -66.75 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: 0.93 Total: 8.34 kcal Atomic # 6 Polarization: -26.57 SS G_CDS: 4.40 Total: -22.17 kcal Atomic # 7 Polarization: -74.70 SS G_CDS: -3.84 Total: -78.54 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -1.53 Total: -22.05 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -68.73 1.98 -66.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339112324.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.106 kcal (2) G-P(sol) polarization free energy of solvation -68.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds