Wall clock time and date at job start Mon Mar 30 2020 06:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46820 * 2 1 4 4 C 1.53000 * 109.46770 * 120.00044 * 2 1 3 5 5 H 1.09000 * 109.53412 * 300.09341 * 4 2 1 6 6 C 1.53113 * 109.50545 * 60.19845 * 4 2 1 7 7 C 1.53111 * 109.16330 * 177.58983 * 6 4 2 8 8 C 1.53040 * 109.27964 * 302.34777 * 7 6 4 9 9 N 1.46841 * 109.52532 * 59.17702 * 8 7 6 10 10 C 1.46900 * 111.00299 * 174.15976 * 9 8 7 11 11 C 1.53002 * 109.47299 * 200.01209 * 10 9 8 12 12 O 1.42901 * 109.46771 * 65.02472 * 11 10 9 13 13 C 1.42902 * 113.99993 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47309 * 179.97438 * 13 12 11 15 15 H 1.07995 * 119.99537 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00038 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99908 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00064 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47291 * 180.02562 * 18 16 14 20 20 H 1.48506 * 109.47108 * 300.00562 * 18 16 14 21 21 H 1.48505 * 109.46847 * 60.00144 * 18 16 14 22 22 C 1.46854 * 111.19805 * 298.25975 * 9 8 7 23 23 H 1.08995 * 109.47012 * 59.99503 * 1 2 3 24 24 H 1.08996 * 109.47193 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47222 * 300.00115 * 1 2 3 26 26 H 1.08994 * 109.47019 * 240.00620 * 2 1 3 27 27 H 1.08999 * 109.46655 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47230 * 299.99941 * 3 2 1 29 29 H 1.09007 * 109.46964 * 60.00322 * 3 2 1 30 30 H 1.08994 * 109.52259 * 297.49755 * 6 4 2 31 31 H 1.09010 * 109.52280 * 57.68932 * 6 4 2 32 32 H 1.09005 * 109.50162 * 62.28484 * 7 6 4 33 33 H 1.08998 * 109.51026 * 182.36407 * 7 6 4 34 34 H 1.08997 * 109.46202 * 299.16039 * 8 7 6 35 35 H 1.08998 * 109.46512 * 179.19248 * 8 7 6 36 36 H 1.08999 * 109.46710 * 80.01545 * 10 9 8 37 37 H 1.08996 * 109.47150 * 320.01363 * 10 9 8 38 38 H 1.08995 * 109.47468 * 305.02406 * 11 10 9 39 39 H 1.08995 * 109.47226 * 185.02365 * 11 10 9 40 40 H 1.09000 * 109.47178 * 59.99608 * 13 12 11 41 41 H 1.08996 * 109.46886 * 299.99833 * 13 12 11 42 42 H 0.97003 * 120.00221 * 180.02562 * 17 16 14 43 43 H 1.08999 * 109.46385 * 181.75334 * 22 9 8 44 44 H 1.08999 * 109.45904 * 301.73455 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6758 -0.2092 2.1399 6 6 1.5341 -2.1664 1.2475 7 6 2.0978 -2.8977 2.4689 8 6 3.6265 -2.8351 2.4343 9 7 4.0604 -1.4322 2.4380 10 6 5.5222 -1.3335 2.5449 11 6 5.9042 0.0629 3.0401 12 8 5.4151 0.2469 4.3701 13 6 5.7194 1.5262 4.9295 14 6 5.1588 1.6102 6.3258 15 1 4.6240 0.7704 6.7443 16 6 5.3295 2.7587 7.0693 17 7 5.9811 3.7811 6.5597 18 14 4.6352 2.8625 8.8004 19 1 4.9513 4.1920 9.3816 20 1 3.1621 2.6803 8.7547 21 1 5.2398 1.7979 9.6408 22 6 3.5704 -0.7217 1.2499 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 -0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6766 1.9564 0.8901 30 1 0.4450 -2.1711 1.2907 31 1 1.8657 -2.6674 0.3379 32 1 1.7345 -2.4200 3.3788 33 1 1.7752 -3.9387 2.4508 34 1 3.9897 -3.3251 1.5310 35 1 4.0307 -3.3425 3.3101 36 1 5.9705 -1.5074 1.5667 37 1 5.8862 -2.0811 3.2496 38 1 5.4644 0.8140 2.3840 39 1 6.9893 0.1661 3.0345 40 1 5.2754 2.3074 4.3125 41 1 6.8005 1.6602 4.9630 42 1 6.1016 4.5890 7.0829 43 1 3.9338 0.3059 1.2656 44 1 3.9337 -1.2217 0.3522 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339112325.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:57 Heat of formation + Delta-G solvation = -71.948750 kcal Electronic energy + Delta-G solvation = -19871.702039 eV Core-core repulsion = 17015.937663 eV Total energy + Delta-G solvation = -2855.764377 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.42901 -36.78428 -35.57297 -33.08219 -32.42459 -29.66219 -28.88774 -27.32254 -26.58348 -23.71123 -23.40277 -22.20823 -21.00594 -20.03586 -19.58319 -16.33837 -16.19380 -15.67290 -15.04530 -14.71269 -14.34943 -14.14543 -14.07789 -13.98696 -13.59371 -13.38189 -12.88692 -12.67113 -12.43824 -12.19029 -11.92642 -11.67529 -11.46905 -11.24103 -11.11049 -10.98310 -10.82153 -10.75371 -10.69226 -10.43926 -10.43348 -10.05141 -10.02943 -9.79057 -9.01256 -8.70816 -8.05260 -7.94792 -6.03404 -4.04053 3.37195 3.39267 3.43772 4.05621 4.41792 4.69597 4.77626 4.85178 4.97030 5.08540 5.15574 5.25749 5.32948 5.45635 5.48349 5.56432 5.57077 5.63821 5.65522 5.70773 5.80809 5.83565 5.87548 5.90755 6.00063 6.03213 6.06884 6.09658 6.16871 6.20510 6.24607 6.33368 6.39247 6.43361 6.58743 7.19917 7.38247 7.40697 7.53214 7.88360 8.25794 8.72119 9.10975 9.60496 11.08314 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.019834 B = 0.004811 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.358646 B = 5818.056575 C = 6168.981063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 C -0.151 4.151 4 C -0.080 4.080 5 H 0.083 0.917 6 C -0.114 4.114 7 C -0.118 4.118 8 C 0.059 3.941 9 N -0.524 5.524 10 C 0.061 3.939 11 C 0.070 3.930 12 O -0.379 6.379 13 C 0.195 3.805 14 C -0.509 4.509 15 H 0.066 0.934 16 C 0.055 3.945 17 N -0.901 5.901 18 Si 0.907 3.093 19 H -0.287 1.287 20 H -0.275 1.275 21 H -0.275 1.275 22 C 0.061 3.939 23 H 0.050 0.950 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.023 0.977 35 H 0.073 0.927 36 H 0.038 0.962 37 H 0.078 0.922 38 H 0.034 0.966 39 H 0.036 0.964 40 H 0.002 0.998 41 H 0.001 0.999 42 H 0.263 0.737 43 H 0.079 0.921 44 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.516 -10.642 -14.529 19.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.108 4.108 3 C -0.208 4.208 4 C -0.099 4.099 5 H 0.101 0.899 6 C -0.152 4.152 7 C -0.155 4.155 8 C -0.069 4.069 9 N -0.248 5.248 10 C -0.066 4.066 11 C -0.008 4.008 12 O -0.299 6.299 13 C 0.120 3.880 14 C -0.548 4.548 15 H 0.084 0.916 16 C -0.145 4.145 17 N -0.541 5.541 18 Si 0.734 3.266 19 H -0.212 1.212 20 H -0.200 1.200 21 H -0.201 1.201 22 C -0.067 4.067 23 H 0.069 0.931 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.042 0.958 35 H 0.092 0.908 36 H 0.056 0.944 37 H 0.096 0.904 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.020 0.980 41 H 0.019 0.981 42 H 0.073 0.927 43 H 0.097 0.903 44 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -7.752 -10.373 -13.959 19.040 hybrid contribution 0.302 0.084 0.005 0.313 sum -7.450 -10.289 -13.954 18.870 Atomic orbital electron populations 1.21876 0.95355 1.01576 1.01647 1.21104 0.95650 0.96298 0.97765 1.21907 1.01338 0.95823 1.01757 1.21239 0.94659 0.95621 0.98406 0.89867 1.21662 1.00184 0.95491 0.97831 1.21584 0.94956 0.99729 0.99268 1.22065 0.95842 0.89085 0.99942 1.61739 1.11023 1.12568 1.39466 1.22123 0.87242 0.98475 0.98788 1.22209 0.96267 0.94943 0.87430 1.87936 1.78484 1.37832 1.25636 1.20150 0.94733 0.79587 0.93490 1.21030 1.35207 1.00383 0.98132 0.91627 1.24937 0.95456 0.95275 0.98862 1.69959 1.41723 1.04677 1.37705 0.86420 0.79550 0.77050 0.83588 1.21236 1.20042 1.20066 1.22212 0.95046 0.99333 0.90091 0.93073 0.92617 0.92501 0.91776 0.92411 0.93093 0.92208 0.91792 0.92770 0.90747 0.92011 0.95833 0.90835 0.94394 0.90356 0.94785 0.94556 0.97988 0.98131 0.92736 0.90314 0.95818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 8.85 37.16 0.33 -1.06 16 2 C -0.09 -0.94 2.51 -90.61 -0.23 -1.17 16 3 C -0.15 -1.68 8.84 37.16 0.33 -1.35 16 4 C -0.08 -1.00 1.94 -90.54 -0.18 -1.17 16 5 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 6 C -0.11 -1.24 4.86 -26.62 -0.13 -1.37 16 7 C -0.12 -1.39 6.09 -26.65 -0.16 -1.55 16 8 C 0.06 0.77 5.43 -3.84 -0.02 0.75 16 9 N -0.52 -8.25 4.53 -234.67 -1.06 -9.31 16 10 C 0.06 0.97 5.39 -3.82 -0.02 0.95 16 11 C 0.07 1.35 6.13 37.16 0.23 1.58 16 12 O -0.38 -9.55 10.27 -35.23 -0.36 -9.91 16 13 C 0.19 5.53 5.69 36.01 0.20 5.74 16 14 C -0.51 -15.43 9.43 -34.44 -0.32 -15.76 16 15 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.90 -27.53 13.29 55.43 0.74 -26.79 16 18 Si 0.91 22.34 29.54 -169.99 -5.02 17.32 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 20 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 C 0.06 0.84 4.19 -3.83 -0.02 0.83 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.05 0.48 6.49 -51.93 -0.34 0.15 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.67 6.45 -51.93 -0.33 0.33 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.73 8.14 -51.92 -0.42 0.30 16 30 H 0.06 0.64 6.58 -51.93 -0.34 0.29 16 31 H 0.05 0.56 8.14 -51.92 -0.42 0.13 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.07 0.97 7.93 -51.93 -0.41 0.56 16 36 H 0.04 0.51 8.00 -51.93 -0.42 0.10 16 37 H 0.08 1.23 7.79 -51.93 -0.40 0.83 16 38 H 0.03 0.65 6.70 -51.93 -0.35 0.30 16 39 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 41 H 0.00 0.03 8.14 -51.93 -0.42 -0.40 16 42 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.08 1.19 4.99 -51.93 -0.26 0.93 16 44 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 338.79 15.07 5.11 5.11 Total: -1.00 -31.66 338.79 -9.00 -40.67 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -8.32 Total: -5.04 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: -0.08 Total: -12.04 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: -0.33 Total: -36.10 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: -0.36 Total: -9.91 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.66 -9.00 -40.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339112325.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.281 kcal (2) G-P(sol) polarization free energy of solvation -31.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds