Wall clock time and date at job start Mon Mar 30 2020 06:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46820 * 2 1 4 4 C 1.53000 * 109.46770 * 120.00044 * 2 1 3 5 5 H 1.09000 * 109.53412 * 300.09341 * 4 2 1 6 6 C 1.53113 * 109.50545 * 60.19845 * 4 2 1 7 7 C 1.53111 * 109.16330 * 177.58983 * 6 4 2 8 8 C 1.53040 * 109.27964 * 302.34777 * 7 6 4 9 9 N 1.46841 * 109.52532 * 59.17702 * 8 7 6 10 10 C 1.46900 * 111.00299 * 174.15976 * 9 8 7 11 11 C 1.53002 * 109.47299 * 200.01209 * 10 9 8 12 12 O 1.42901 * 109.46771 * 65.02472 * 11 10 9 13 13 C 1.42902 * 113.99993 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47309 * 179.97438 * 13 12 11 15 15 H 1.07995 * 119.99537 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00038 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99908 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00064 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47291 * 180.02562 * 18 16 14 20 20 H 1.48506 * 109.47108 * 300.00562 * 18 16 14 21 21 H 1.48505 * 109.46847 * 60.00144 * 18 16 14 22 22 C 1.46854 * 111.19805 * 298.25975 * 9 8 7 23 23 H 1.08995 * 109.47012 * 59.99503 * 1 2 3 24 24 H 1.08996 * 109.47193 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47222 * 300.00115 * 1 2 3 26 26 H 1.08994 * 109.47019 * 240.00620 * 2 1 3 27 27 H 1.08999 * 109.46655 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47230 * 299.99941 * 3 2 1 29 29 H 1.09007 * 109.46964 * 60.00322 * 3 2 1 30 30 H 1.08994 * 109.52259 * 297.49755 * 6 4 2 31 31 H 1.09010 * 109.52280 * 57.68932 * 6 4 2 32 32 H 1.09005 * 109.50162 * 62.28484 * 7 6 4 33 33 H 1.08998 * 109.51026 * 182.36407 * 7 6 4 34 34 H 1.08997 * 109.46202 * 299.16039 * 8 7 6 35 35 H 1.08998 * 109.46512 * 179.19248 * 8 7 6 36 36 H 1.08999 * 109.46710 * 80.01545 * 10 9 8 37 37 H 1.08996 * 109.47150 * 320.01363 * 10 9 8 38 38 H 1.08995 * 109.47468 * 305.02406 * 11 10 9 39 39 H 1.08995 * 109.47226 * 185.02365 * 11 10 9 40 40 H 1.09000 * 109.47178 * 59.99608 * 13 12 11 41 41 H 1.08996 * 109.46886 * 299.99833 * 13 12 11 42 42 H 0.97003 * 120.00221 * 180.02562 * 17 16 14 43 43 H 1.08999 * 109.46385 * 181.75334 * 22 9 8 44 44 H 1.08999 * 109.45904 * 301.73455 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6758 -0.2092 2.1399 6 6 1.5341 -2.1664 1.2475 7 6 2.0978 -2.8977 2.4689 8 6 3.6265 -2.8351 2.4343 9 7 4.0604 -1.4322 2.4380 10 6 5.5222 -1.3335 2.5449 11 6 5.9042 0.0629 3.0401 12 8 5.4151 0.2469 4.3701 13 6 5.7194 1.5262 4.9295 14 6 5.1588 1.6102 6.3258 15 1 4.6240 0.7704 6.7443 16 6 5.3295 2.7587 7.0693 17 7 5.9811 3.7811 6.5597 18 14 4.6352 2.8625 8.8004 19 1 4.9513 4.1920 9.3816 20 1 3.1621 2.6803 8.7547 21 1 5.2398 1.7979 9.6408 22 6 3.5704 -0.7217 1.2499 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 -0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6766 1.9564 0.8901 30 1 0.4450 -2.1711 1.2907 31 1 1.8657 -2.6674 0.3379 32 1 1.7345 -2.4200 3.3788 33 1 1.7752 -3.9387 2.4508 34 1 3.9897 -3.3251 1.5310 35 1 4.0307 -3.3425 3.3101 36 1 5.9705 -1.5074 1.5667 37 1 5.8862 -2.0811 3.2496 38 1 5.4644 0.8140 2.3840 39 1 6.9893 0.1661 3.0345 40 1 5.2754 2.3074 4.3125 41 1 6.8005 1.6602 4.9630 42 1 6.1016 4.5890 7.0829 43 1 3.9338 0.3059 1.2656 44 1 3.9337 -1.2217 0.3522 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339112325.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:56 Heat of formation + Delta-G solvation = -91.720861 kcal Electronic energy + Delta-G solvation = -19872.559423 eV Core-core repulsion = 17015.937663 eV Total energy + Delta-G solvation = -2856.621760 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.49115 -38.52013 -36.76535 -34.95846 -33.90833 -30.70019 -30.39519 -28.81697 -28.02653 -24.93048 -24.46946 -24.33768 -22.30343 -21.02610 -20.54438 -18.60803 -17.48750 -17.37943 -16.53410 -16.12597 -16.02459 -15.53802 -15.09968 -15.05710 -14.89365 -14.46579 -14.37940 -13.94276 -13.58500 -13.45911 -13.24436 -13.02768 -12.90505 -12.73828 -12.61400 -12.34558 -12.25240 -12.12765 -11.94250 -11.77097 -11.68522 -11.38787 -11.26823 -11.00784 -10.86506 -10.83094 -10.17124 -9.09539 -8.31140 -6.43288 1.39076 1.44447 1.52773 2.35443 2.93686 3.02261 3.25993 3.76579 3.83334 3.91863 4.14531 4.21646 4.26356 4.31266 4.33197 4.47206 4.50358 4.54456 4.63437 4.68212 4.70267 4.79977 4.83000 4.85730 4.94160 4.96985 5.00619 5.03093 5.07109 5.13985 5.19063 5.19842 5.27218 5.31799 5.42921 5.53494 5.55742 5.63407 5.98191 6.21881 6.31529 6.58030 6.87303 7.28940 8.81189 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.019834 B = 0.004811 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.358646 B = 5818.056575 C = 6168.981063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.152 4.152 4 C -0.078 4.078 5 H 0.049 0.951 6 C -0.108 4.108 7 C -0.116 4.116 8 C 0.058 3.942 9 N -0.555 5.555 10 C 0.070 3.930 11 C 0.060 3.940 12 O -0.395 6.395 13 C 0.211 3.789 14 C -0.546 4.546 15 H 0.059 0.941 16 C 0.007 3.993 17 N -0.932 5.932 18 Si 0.983 3.017 19 H -0.273 1.273 20 H -0.267 1.267 21 H -0.264 1.264 22 C 0.063 3.937 23 H 0.063 0.937 24 H 0.067 0.933 25 H 0.044 0.956 26 H 0.079 0.921 27 H 0.048 0.952 28 H 0.066 0.934 29 H 0.039 0.961 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.049 0.951 33 H 0.086 0.914 34 H 0.043 0.957 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.032 0.968 39 H 0.045 0.955 40 H -0.021 1.021 41 H -0.017 1.017 42 H 0.271 0.729 43 H 0.057 0.943 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.463 -11.984 -15.110 21.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.103 4.103 3 C -0.209 4.209 4 C -0.097 4.097 5 H 0.067 0.933 6 C -0.145 4.145 7 C -0.154 4.154 8 C -0.069 4.069 9 N -0.280 5.280 10 C -0.058 4.058 11 C -0.017 4.017 12 O -0.314 6.314 13 C 0.136 3.864 14 C -0.584 4.584 15 H 0.077 0.923 16 C -0.192 4.192 17 N -0.571 5.571 18 Si 0.805 3.195 19 H -0.198 1.198 20 H -0.192 1.192 21 H -0.189 1.189 22 C -0.065 4.065 23 H 0.082 0.918 24 H 0.086 0.914 25 H 0.063 0.937 26 H 0.098 0.902 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.058 0.942 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.105 0.895 34 H 0.061 0.939 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.050 0.950 39 H 0.064 0.936 40 H -0.003 1.003 41 H 0.001 0.999 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -8.698 -11.731 -14.564 20.624 hybrid contribution 0.639 0.512 0.110 0.826 sum -8.059 -11.219 -14.454 19.993 Atomic orbital electron populations 1.21857 0.94293 1.02374 1.01671 1.21078 0.96481 0.95445 0.97257 1.21913 1.00792 0.96638 1.01554 1.21198 0.93701 0.96871 0.97938 0.93253 1.21634 1.00854 0.94021 0.98018 1.21591 0.94070 1.01102 0.98640 1.22112 0.96677 0.87533 1.00566 1.61677 1.10860 1.14568 1.40936 1.22024 0.88056 0.95597 1.00095 1.22564 0.96784 0.97622 0.84730 1.87892 1.79018 1.35889 1.28630 1.19762 0.93145 0.80500 0.93038 1.21339 1.36569 1.01056 0.99393 0.92271 1.25959 0.95171 0.94351 1.03676 1.70068 1.42078 1.05265 1.39687 0.85248 0.78979 0.77837 0.77423 1.19786 1.19176 1.18891 1.22195 0.95968 0.98148 0.90141 0.91830 0.91420 0.93727 0.90217 0.93293 0.91473 0.94179 0.90589 0.91043 0.93238 0.89529 0.93872 0.91449 0.91212 0.90357 0.94981 0.93649 1.00339 0.99911 0.92062 0.92440 0.93997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 8.85 71.98 0.64 -1.85 16 2 C -0.08 -1.65 2.51 -10.79 -0.03 -1.68 16 3 C -0.15 -3.37 8.84 71.98 0.64 -2.74 16 4 C -0.08 -1.90 1.94 -10.74 -0.02 -1.92 16 5 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 6 C -0.11 -2.11 4.86 30.67 0.15 -1.97 16 7 C -0.12 -2.56 6.09 30.64 0.19 -2.38 16 8 C 0.06 1.45 5.43 86.33 0.47 1.92 16 9 N -0.56 -17.28 4.53 -896.35 -4.06 -21.34 16 10 C 0.07 2.17 5.39 86.30 0.47 2.64 16 11 C 0.06 2.40 6.13 71.98 0.44 2.84 16 12 O -0.39 -20.60 10.27 -148.98 -1.53 -22.13 16 13 C 0.21 12.50 5.69 71.24 0.41 12.90 16 14 C -0.55 -33.98 9.43 25.60 0.24 -33.74 16 15 H 0.06 3.66 7.81 -2.91 -0.02 3.64 16 16 C 0.01 0.40 5.46 84.66 0.46 0.86 16 17 N -0.93 -57.62 13.29 21.45 0.28 -57.34 16 18 Si 0.98 45.73 29.54 68.60 2.03 47.76 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 22 C 0.06 1.71 4.19 86.33 0.36 2.07 16 23 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.07 1.00 6.49 -2.39 -0.02 0.98 16 25 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 26 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.05 1.15 6.45 -2.39 -0.02 1.14 16 28 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.08 1.32 6.58 -2.39 -0.02 1.31 16 31 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 32 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 33 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.07 1.72 7.93 -2.39 -0.02 1.70 16 36 H 0.07 1.73 8.00 -2.39 -0.02 1.71 16 37 H 0.08 2.41 7.79 -2.39 -0.02 2.39 16 38 H 0.03 1.28 6.70 -2.39 -0.02 1.26 16 39 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 40 H -0.02 -1.32 8.14 -2.39 -0.02 -1.34 16 41 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 42 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 43 H 0.06 1.78 4.99 -2.39 -0.01 1.77 16 44 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -69.30 338.79 2.05 -67.25 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: 0.92 Total: 8.83 kcal Atomic # 6 Polarization: -27.43 SS G_CDS: 4.41 Total: -23.02 kcal Atomic # 7 Polarization: -74.90 SS G_CDS: -3.78 Total: -78.68 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -1.53 Total: -22.13 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -69.30 2.05 -67.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339112325.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.474 kcal (2) G-P(sol) polarization free energy of solvation -69.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds