Wall clock time and date at job start Mon Mar 30 2020 07:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47005 * 2 1 4 4 H 1.09000 * 109.48619 * 305.00478 * 3 2 1 5 5 C 1.53094 * 109.48047 * 184.97723 * 3 2 1 6 6 C 1.53198 * 109.14956 * 182.41439 * 5 3 2 7 7 H 1.09001 * 109.53939 * 297.10108 * 6 5 3 8 8 C 1.53007 * 109.61328 * 176.88661 * 6 5 3 9 9 N 1.46898 * 109.46991 * 177.49552 * 8 6 5 10 10 C 1.46904 * 110.99629 * 163.81341 * 9 8 6 11 11 C 1.53000 * 109.47451 * 283.98463 * 10 9 8 12 12 C 1.46898 * 111.00286 * 287.76670 * 9 8 6 13 13 C 1.50705 * 109.46939 * 163.65498 * 12 9 8 14 14 H 1.07997 * 119.99902 * 4.63943 * 13 12 9 15 15 C 1.37876 * 119.99725 * 184.63268 * 13 12 9 16 16 N 1.31516 * 120.00150 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 120.00270 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47061 * 89.99761 * 17 15 13 19 19 H 1.48494 * 109.47072 * 210.00128 * 17 15 13 20 20 H 1.48505 * 109.46790 * 330.00130 * 17 15 13 21 21 C 1.53170 * 109.04716 * 56.97175 * 6 5 3 22 22 C 1.53091 * 109.16312 * 303.01972 * 21 6 5 23 23 O 1.42904 * 109.41734 * 57.60787 * 22 21 6 24 24 H 1.08995 * 109.47203 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47106 * 299.99954 * 1 2 3 26 26 H 1.09003 * 109.47063 * 59.99400 * 1 2 3 27 27 H 1.09001 * 109.46888 * 240.00488 * 2 1 3 28 28 H 1.08992 * 109.46914 * 119.99895 * 2 1 3 29 29 H 1.09003 * 109.52087 * 302.30282 * 5 3 2 30 30 H 1.08998 * 109.52206 * 62.49169 * 5 3 2 31 31 H 1.08996 * 109.46759 * 297.50092 * 8 6 5 32 32 H 1.09000 * 109.46894 * 57.49627 * 8 6 5 33 33 H 1.09005 * 109.46805 * 43.98583 * 10 9 8 34 34 H 1.09004 * 109.47114 * 163.98041 * 10 9 8 35 35 H 1.09001 * 109.46909 * 65.35429 * 11 10 9 36 36 H 1.08991 * 109.47182 * 185.35258 * 11 10 9 37 37 H 1.09002 * 109.46811 * 305.35535 * 11 10 9 38 38 H 1.08999 * 109.47186 * 283.66028 * 12 9 8 39 39 H 1.08998 * 109.46809 * 43.66047 * 12 9 8 40 40 H 0.96994 * 120.00425 * 180.02562 * 16 15 13 41 41 H 1.09007 * 109.52640 * 183.11326 * 21 6 5 42 42 H 1.08999 * 109.52328 * 62.92902 * 21 6 5 43 43 H 1.08998 * 109.48323 * 297.62153 * 22 21 6 44 44 H 1.08999 * 109.48064 * 177.58998 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9818 -0.8417 5 6 3.5658 1.4446 -0.1252 6 6 4.0731 2.8888 -0.0638 7 1 3.6792 3.4500 -0.9112 8 6 5.6025 2.8984 -0.1100 9 7 6.0836 4.2864 -0.1114 10 6 7.5114 4.3489 0.2285 11 6 7.6872 4.1384 1.7337 12 6 5.8213 4.9333 -1.4039 13 6 5.9475 6.4274 -1.2526 14 1 6.2704 6.8496 -0.3125 15 6 5.6509 7.2552 -2.3145 16 7 5.7615 8.5591 -2.1827 17 14 5.0919 6.5250 -3.9405 18 1 3.6120 6.4013 -3.9448 19 1 5.5179 7.4109 -5.0535 20 1 5.7013 5.1821 -4.1155 21 6 3.5960 3.5311 1.2424 22 6 2.0690 3.4482 1.3146 23 8 1.6625 2.0814 1.2213 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.9993 0.8712 0.6942 30 1 3.8538 0.9972 -1.0765 31 1 5.9956 2.3784 0.7635 32 1 5.9417 2.3954 -1.0155 33 1 8.0481 3.5694 -0.3125 34 1 7.9091 5.3246 -0.0509 35 1 7.3775 3.1272 1.9978 36 1 8.7346 4.2789 2.0004 37 1 7.0745 4.8592 2.2753 38 1 6.5435 4.5802 -2.1401 39 1 4.8132 4.6856 -1.7361 40 1 5.5524 9.1416 -2.9296 41 1 3.9057 4.5759 1.2691 42 1 4.0301 2.9999 2.0894 43 1 1.6348 4.0137 0.4902 44 1 1.7267 3.8654 2.2617 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356926190.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:14 Heat of formation + Delta-G solvation = -68.082099 kcal Electronic energy + Delta-G solvation = -20217.027926 eV Core-core repulsion = 17361.431220 eV Total energy + Delta-G solvation = -2855.596706 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.52590 -37.19975 -33.96679 -33.69320 -32.51211 -30.18521 -29.67553 -28.02231 -25.72005 -23.65078 -22.88196 -22.10226 -21.03135 -20.11922 -19.18388 -16.87211 -16.29279 -15.79283 -15.08570 -14.67224 -14.47470 -14.28276 -14.06015 -13.67211 -13.51771 -13.16268 -13.08548 -12.51991 -12.35547 -12.05132 -11.79247 -11.73634 -11.48095 -11.20246 -11.18290 -11.05978 -10.91016 -10.71121 -10.63419 -10.40733 -10.13499 -10.02260 -9.90724 -9.75622 -9.32301 -9.12126 -8.56398 -7.33866 -6.05464 -4.01815 3.26076 3.34210 3.35962 3.92295 4.40949 4.53153 4.91551 4.96095 5.07219 5.11064 5.25373 5.27550 5.35881 5.45996 5.49160 5.61466 5.67323 5.73910 5.81628 5.85566 5.86933 5.93297 5.97014 6.03467 6.09093 6.12316 6.16509 6.19637 6.25071 6.32484 6.42681 6.64848 6.68820 6.71551 6.75287 6.89371 6.98708 7.43852 7.63726 7.94883 8.08555 8.67293 9.04569 9.57013 11.07864 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.018540 B = 0.006158 C = 0.005251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.872667 B = 4545.708573 C = 5331.325696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C 0.091 3.909 4 H 0.055 0.945 5 C -0.144 4.144 6 C -0.084 4.084 7 H 0.073 0.927 8 C 0.061 3.939 9 N -0.524 5.524 10 C 0.056 3.944 11 C -0.141 4.141 12 C 0.161 3.839 13 C -0.504 4.504 14 H 0.080 0.920 15 C 0.068 3.932 16 N -0.901 5.901 17 Si 0.871 3.129 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.269 1.269 21 C -0.136 4.136 22 C 0.059 3.941 23 O -0.383 6.383 24 H 0.050 0.950 25 H 0.062 0.938 26 H 0.051 0.949 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.021 0.979 33 H 0.016 0.984 34 H 0.086 0.914 35 H 0.042 0.958 36 H 0.047 0.953 37 H 0.062 0.938 38 H -0.015 1.015 39 H 0.024 0.976 40 H 0.263 0.737 41 H 0.093 0.907 42 H 0.061 0.939 43 H 0.048 0.952 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.555 -15.489 4.903 17.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C 0.034 3.966 4 H 0.073 0.927 5 C -0.182 4.182 6 C -0.103 4.103 7 H 0.092 0.908 8 C -0.068 4.068 9 N -0.248 5.248 10 C -0.072 4.072 11 C -0.199 4.199 12 C 0.035 3.965 13 C -0.543 4.543 14 H 0.098 0.902 15 C -0.133 4.133 16 N -0.540 5.540 17 Si 0.699 3.301 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.194 1.194 21 C -0.173 4.173 22 C -0.017 4.017 23 O -0.303 6.303 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.039 0.961 33 H 0.035 0.965 34 H 0.104 0.896 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.002 0.998 39 H 0.042 0.958 40 H 0.073 0.927 41 H 0.112 0.888 42 H 0.080 0.920 43 H 0.066 0.934 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.927 -15.145 5.303 17.106 hybrid contribution 0.345 -0.507 -1.881 1.978 sum -5.582 -15.652 3.422 16.966 Atomic orbital electron populations 1.21716 0.95490 1.01153 1.02302 1.21539 0.96490 0.94819 1.02409 1.22080 0.93676 0.93519 0.87362 0.92730 1.22254 0.95928 0.97826 1.02195 1.21188 0.95680 0.94526 0.98927 0.90849 1.22083 0.94334 0.91139 0.99251 1.61947 1.15783 1.13210 1.33832 1.21976 0.88869 1.01487 0.94886 1.21760 1.00274 1.00941 0.96937 1.20201 0.95122 0.95821 0.85365 1.21037 1.44850 0.88356 1.00027 0.90151 1.24887 0.95375 0.94698 0.98321 1.69889 1.49625 1.02631 1.31852 0.86923 0.79424 0.79430 0.84340 1.20204 1.21211 1.19410 1.22058 0.94648 1.03588 0.97047 1.22643 0.95150 0.82254 1.01662 1.87850 1.78802 1.25296 1.38350 0.93072 0.91926 0.93023 0.90944 0.91292 0.91333 0.91510 0.91830 0.96090 0.96531 0.89595 0.93934 0.93374 0.91927 0.99767 0.95801 0.92719 0.88802 0.92043 0.93380 0.89243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.81 37.16 0.36 -1.10 16 2 C -0.12 -1.21 5.64 -26.73 -0.15 -1.36 16 3 C 0.09 1.17 2.64 -26.68 -0.07 1.10 16 4 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 5 C -0.14 -1.88 4.71 -26.58 -0.13 -2.01 16 6 C -0.08 -1.33 2.27 -90.43 -0.21 -1.54 16 7 H 0.07 1.31 6.49 -51.93 -0.34 0.98 16 8 C 0.06 1.02 4.21 -3.82 -0.02 1.01 16 9 N -0.52 -10.59 3.76 -236.06 -0.89 -11.47 16 10 C 0.06 1.05 5.52 -3.82 -0.02 1.03 16 11 C -0.14 -2.20 9.95 37.16 0.37 -1.83 16 12 C 0.16 3.85 3.63 -4.97 -0.02 3.83 16 13 C -0.50 -14.11 8.98 -34.44 -0.31 -14.42 16 14 H 0.08 2.45 7.82 -52.49 -0.41 2.04 16 15 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 16 N -0.90 -27.43 13.96 55.43 0.77 -26.66 16 17 Si 0.87 21.45 27.38 -169.99 -4.65 16.79 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.27 -6.43 6.68 56.52 0.38 -6.05 16 21 C -0.14 -2.09 5.25 -26.60 -0.14 -2.23 16 22 C 0.06 0.84 6.84 37.20 0.25 1.09 16 23 O -0.38 -5.48 9.94 -35.23 -0.35 -5.83 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.67 7.82 -51.93 -0.41 0.27 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.98 6.63 -51.93 -0.34 0.64 16 32 H 0.02 0.36 8.05 -51.93 -0.42 -0.06 16 33 H 0.02 0.29 8.00 -51.93 -0.42 -0.12 16 34 H 0.09 1.82 7.00 -51.93 -0.36 1.46 16 35 H 0.04 0.60 6.92 -51.93 -0.36 0.24 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H -0.02 -0.38 7.43 -51.93 -0.39 -0.76 16 39 H 0.02 0.57 5.44 -51.93 -0.28 0.29 16 40 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.09 1.67 7.79 -51.92 -0.40 1.26 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 336.26 15.07 5.07 5.07 Total: -1.00 -29.53 336.26 -8.57 -38.10 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -8.36 Total: -1.45 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: -0.16 Total: -14.56 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: -0.11 Total: -38.13 kcal Atomic # 8 Polarization: -5.48 SS G_CDS: -0.35 Total: -5.83 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.65 Total: 16.79 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.53 -8.57 -38.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356926190.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.979 kcal (2) G-P(sol) polarization free energy of solvation -29.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds