Wall clock time and date at job start Mon Mar 30 2020 07:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47005 * 2 1 4 4 H 1.09000 * 109.48619 * 305.00478 * 3 2 1 5 5 C 1.53094 * 109.48047 * 184.97723 * 3 2 1 6 6 C 1.53198 * 109.14956 * 182.41439 * 5 3 2 7 7 H 1.09001 * 109.53939 * 297.10108 * 6 5 3 8 8 C 1.53007 * 109.61328 * 176.88661 * 6 5 3 9 9 N 1.46898 * 109.46991 * 177.49552 * 8 6 5 10 10 C 1.46904 * 110.99629 * 163.81341 * 9 8 6 11 11 C 1.53000 * 109.47451 * 283.98463 * 10 9 8 12 12 C 1.46898 * 111.00286 * 287.76670 * 9 8 6 13 13 C 1.50705 * 109.46939 * 163.65498 * 12 9 8 14 14 H 1.07997 * 119.99902 * 4.63943 * 13 12 9 15 15 C 1.37876 * 119.99725 * 184.63268 * 13 12 9 16 16 N 1.31516 * 120.00150 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 120.00270 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47061 * 89.99761 * 17 15 13 19 19 H 1.48494 * 109.47072 * 210.00128 * 17 15 13 20 20 H 1.48505 * 109.46790 * 330.00130 * 17 15 13 21 21 C 1.53170 * 109.04716 * 56.97175 * 6 5 3 22 22 C 1.53091 * 109.16312 * 303.01972 * 21 6 5 23 23 O 1.42904 * 109.41734 * 57.60787 * 22 21 6 24 24 H 1.08995 * 109.47203 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47106 * 299.99954 * 1 2 3 26 26 H 1.09003 * 109.47063 * 59.99400 * 1 2 3 27 27 H 1.09001 * 109.46888 * 240.00488 * 2 1 3 28 28 H 1.08992 * 109.46914 * 119.99895 * 2 1 3 29 29 H 1.09003 * 109.52087 * 302.30282 * 5 3 2 30 30 H 1.08998 * 109.52206 * 62.49169 * 5 3 2 31 31 H 1.08996 * 109.46759 * 297.50092 * 8 6 5 32 32 H 1.09000 * 109.46894 * 57.49627 * 8 6 5 33 33 H 1.09005 * 109.46805 * 43.98583 * 10 9 8 34 34 H 1.09004 * 109.47114 * 163.98041 * 10 9 8 35 35 H 1.09001 * 109.46909 * 65.35429 * 11 10 9 36 36 H 1.08991 * 109.47182 * 185.35258 * 11 10 9 37 37 H 1.09002 * 109.46811 * 305.35535 * 11 10 9 38 38 H 1.08999 * 109.47186 * 283.66028 * 12 9 8 39 39 H 1.08998 * 109.46809 * 43.66047 * 12 9 8 40 40 H 0.96994 * 120.00425 * 180.02562 * 16 15 13 41 41 H 1.09007 * 109.52640 * 183.11326 * 21 6 5 42 42 H 1.08999 * 109.52328 * 62.92902 * 21 6 5 43 43 H 1.08998 * 109.48323 * 297.62153 * 22 21 6 44 44 H 1.08999 * 109.48064 * 177.58998 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9818 -0.8417 5 6 3.5658 1.4446 -0.1252 6 6 4.0731 2.8888 -0.0638 7 1 3.6792 3.4500 -0.9112 8 6 5.6025 2.8984 -0.1100 9 7 6.0836 4.2864 -0.1114 10 6 7.5114 4.3489 0.2285 11 6 7.6872 4.1384 1.7337 12 6 5.8213 4.9333 -1.4039 13 6 5.9475 6.4274 -1.2526 14 1 6.2704 6.8496 -0.3125 15 6 5.6509 7.2552 -2.3145 16 7 5.7615 8.5591 -2.1827 17 14 5.0919 6.5250 -3.9405 18 1 3.6120 6.4013 -3.9448 19 1 5.5179 7.4109 -5.0535 20 1 5.7013 5.1821 -4.1155 21 6 3.5960 3.5311 1.2424 22 6 2.0690 3.4482 1.3146 23 8 1.6625 2.0814 1.2213 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.9993 0.8712 0.6942 30 1 3.8538 0.9972 -1.0765 31 1 5.9956 2.3784 0.7635 32 1 5.9417 2.3954 -1.0155 33 1 8.0481 3.5694 -0.3125 34 1 7.9091 5.3246 -0.0509 35 1 7.3775 3.1272 1.9978 36 1 8.7346 4.2789 2.0004 37 1 7.0745 4.8592 2.2753 38 1 6.5435 4.5802 -2.1401 39 1 4.8132 4.6856 -1.7361 40 1 5.5524 9.1416 -2.9296 41 1 3.9057 4.5759 1.2691 42 1 4.0301 2.9999 2.0894 43 1 1.6348 4.0137 0.4902 44 1 1.7267 3.8654 2.2617 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356926190.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:14 Heat of formation + Delta-G solvation = -85.894962 kcal Electronic energy + Delta-G solvation = -20217.800350 eV Core-core repulsion = 17361.431220 eV Total energy + Delta-G solvation = -2856.369130 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.67583 -38.69330 -35.16264 -34.83317 -34.51453 -31.79010 -30.69506 -29.68715 -27.16702 -24.70927 -24.18306 -23.86172 -22.12202 -21.40784 -20.59703 -19.00819 -17.33254 -16.99909 -16.66319 -16.29159 -15.83418 -15.61497 -15.45685 -14.96961 -14.59962 -14.52453 -14.36362 -14.12996 -14.00486 -13.28177 -13.23580 -12.83447 -12.70892 -12.55779 -12.50365 -12.45892 -12.25727 -12.00488 -11.90893 -11.86910 -11.76642 -11.41057 -11.40731 -11.25262 -11.02055 -10.76532 -10.30536 -8.95626 -8.28427 -6.30121 1.31163 1.32326 1.42781 2.32331 2.89581 3.03443 3.18943 3.74552 3.84914 3.99393 4.07312 4.22262 4.25432 4.31794 4.41750 4.45400 4.49796 4.56177 4.64240 4.67157 4.72710 4.73908 4.85495 4.91221 4.95541 4.99958 5.01127 5.03945 5.08102 5.12759 5.21499 5.24817 5.27849 5.42547 5.43773 5.47679 5.50323 5.58226 6.03815 6.35938 6.44693 6.69435 6.76363 7.32994 8.88445 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.018540 B = 0.006158 C = 0.005251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.872667 B = 4545.708573 C = 5331.325696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.111 4.111 3 C 0.085 3.915 4 H 0.047 0.953 5 C -0.135 4.135 6 C -0.084 4.084 7 H 0.048 0.952 8 C 0.063 3.937 9 N -0.536 5.536 10 C 0.054 3.946 11 C -0.130 4.130 12 C 0.174 3.826 13 C -0.508 4.508 14 H 0.038 0.962 15 C 0.010 3.990 16 N -0.948 5.948 17 Si 0.940 3.060 18 H -0.266 1.266 19 H -0.281 1.281 20 H -0.254 1.254 21 C -0.129 4.129 22 C 0.062 3.938 23 O -0.389 6.389 24 H 0.067 0.933 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.090 0.910 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.025 0.975 33 H 0.031 0.969 34 H 0.049 0.951 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.046 0.954 38 H -0.021 1.021 39 H 0.027 0.973 40 H 0.266 0.734 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.039 0.961 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.064 -18.533 4.542 20.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.149 4.149 3 C 0.028 3.972 4 H 0.065 0.935 5 C -0.173 4.173 6 C -0.103 4.103 7 H 0.067 0.933 8 C -0.065 4.065 9 N -0.260 5.260 10 C -0.074 4.074 11 C -0.188 4.188 12 C 0.047 3.953 13 C -0.546 4.546 14 H 0.056 0.944 15 C -0.187 4.187 16 N -0.589 5.589 17 Si 0.764 3.236 18 H -0.191 1.191 19 H -0.207 1.207 20 H -0.178 1.178 21 C -0.167 4.167 22 C -0.014 4.014 23 O -0.309 6.309 24 H 0.086 0.914 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.108 0.892 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.043 0.957 33 H 0.049 0.951 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.065 0.935 38 H -0.003 1.003 39 H 0.045 0.955 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.057 0.943 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.432 -18.213 4.959 19.942 hybrid contribution 0.544 0.471 -1.677 1.825 sum -5.888 -17.743 3.282 18.980 Atomic orbital electron populations 1.21706 0.95168 1.02076 1.01620 1.21554 0.96764 0.93099 1.03434 1.22258 0.93571 0.94819 0.86562 0.93502 1.22192 0.96010 0.95701 1.03379 1.21173 0.94938 0.96292 0.97941 0.93343 1.22170 0.95002 0.88989 1.00350 1.61876 1.16909 1.15575 1.31649 1.21994 0.88067 0.99962 0.97368 1.21663 1.01436 1.01650 0.94039 1.19914 0.94956 0.93314 0.87154 1.21248 1.44081 0.90911 0.98384 0.94412 1.25779 0.95541 0.94958 1.02470 1.70042 1.51249 1.04302 1.33302 0.85816 0.79412 0.79154 0.79192 1.19091 1.20699 1.17818 1.21949 0.95681 1.01727 0.97345 1.22600 0.94135 0.82565 1.02117 1.87856 1.78853 1.24997 1.39157 0.91367 0.93233 0.93103 0.89163 0.90954 0.90263 0.90153 0.89710 0.95666 0.95107 0.93219 0.91836 0.91325 0.93451 1.00297 0.95492 0.92525 0.91861 0.91144 0.94301 0.87852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.81 71.98 0.71 -1.86 16 2 C -0.11 -2.00 5.64 30.60 0.17 -1.82 16 3 C 0.09 2.00 2.64 30.63 0.08 2.08 16 4 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 5 C -0.13 -3.15 4.71 30.69 0.14 -3.01 16 6 C -0.08 -2.55 2.27 -10.67 -0.02 -2.57 16 7 H 0.05 1.70 6.49 -2.39 -0.02 1.69 16 8 C 0.06 2.00 4.21 86.31 0.36 2.36 16 9 N -0.54 -21.58 3.76 -900.77 -3.39 -24.96 16 10 C 0.05 2.01 5.52 86.30 0.48 2.49 16 11 C -0.13 -3.86 9.95 71.98 0.72 -3.15 16 12 C 0.17 8.33 3.63 85.56 0.31 8.64 16 13 C -0.51 -29.44 8.98 25.60 0.23 -29.21 16 14 H 0.04 2.45 7.82 -2.91 -0.02 2.42 16 15 C 0.01 0.56 5.47 84.65 0.46 1.03 16 16 N -0.95 -59.57 13.96 21.45 0.30 -59.27 16 17 Si 0.94 44.41 27.38 68.60 1.88 46.29 16 18 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 19 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 20 H -0.25 -11.30 6.68 99.48 0.66 -10.64 16 21 C -0.13 -3.89 5.25 30.68 0.16 -3.73 16 22 C 0.06 1.71 6.84 72.01 0.49 2.20 16 23 O -0.39 -10.44 9.94 -148.98 -1.48 -11.92 16 24 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.05 0.98 7.82 -2.39 -0.02 0.96 16 26 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.08 2.35 6.63 -2.39 -0.02 2.34 16 32 H 0.03 0.79 8.05 -2.39 -0.02 0.77 16 33 H 0.03 1.05 8.00 -2.38 -0.02 1.03 16 34 H 0.05 2.18 7.00 -2.39 -0.02 2.17 16 35 H 0.06 1.62 6.92 -2.39 -0.02 1.60 16 36 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 38 H -0.02 -1.00 7.43 -2.39 -0.02 -1.02 16 39 H 0.03 1.28 5.44 -2.39 -0.01 1.27 16 40 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 41 H 0.06 2.29 7.79 -2.38 -0.02 2.27 16 42 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.04 1.12 8.14 -2.39 -0.02 1.11 16 44 H 0.10 2.50 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -65.21 336.26 2.48 -62.73 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 0.88 Total: 13.67 kcal Atomic # 6 Polarization: -30.84 SS G_CDS: 4.29 Total: -26.55 kcal Atomic # 7 Polarization: -81.14 SS G_CDS: -3.09 Total: -84.23 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: -1.48 Total: -11.92 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.88 Total: 46.29 kcal Total: -65.21 2.48 -62.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356926190.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.167 kcal (2) G-P(sol) polarization free energy of solvation -65.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds