Wall clock time and date at job start Mon Mar 30 2020 07:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47114 * 2 1 4 4 H 1.09005 * 109.48949 * 54.97120 * 3 2 1 5 5 C 1.53095 * 109.47943 * 174.99660 * 3 2 1 6 6 C 1.53176 * 109.21349 * 177.62240 * 5 3 2 7 7 H 1.09000 * 109.54646 * 183.12108 * 6 5 3 8 8 C 1.52997 * 109.54516 * 62.94539 * 6 5 3 9 9 N 1.46903 * 109.47311 * 174.99967 * 8 6 5 10 10 C 1.46893 * 110.99998 * 293.95379 * 9 8 6 11 11 C 1.52999 * 109.47384 * 164.04270 * 10 9 8 12 12 C 1.46899 * 110.99850 * 169.99949 * 9 8 6 13 13 C 1.50701 * 109.47431 * 284.30038 * 12 9 8 14 14 H 1.08008 * 119.99513 * 4.60534 * 13 12 9 15 15 C 1.37871 * 120.00514 * 184.60785 * 13 12 9 16 16 N 1.31519 * 119.99844 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00390 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.46801 * 59.99943 * 17 15 13 19 19 H 1.48497 * 109.47482 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47338 * 300.00418 * 17 15 13 21 21 C 1.53183 * 109.03813 * 302.98991 * 6 5 3 22 22 C 1.53092 * 109.16333 * 56.97607 * 21 6 5 23 23 O 1.42897 * 109.41629 * 302.39480 * 22 21 6 24 24 H 1.09002 * 109.46910 * 60.00190 * 1 2 3 25 25 H 1.09000 * 109.47027 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47749 * 300.00502 * 1 2 3 27 27 H 1.08999 * 109.47486 * 239.99967 * 2 1 3 28 28 H 1.09002 * 109.46910 * 119.99810 * 2 1 3 29 29 H 1.09001 * 109.51848 * 57.68734 * 5 3 2 30 30 H 1.08995 * 109.52403 * 297.56085 * 5 3 2 31 31 H 1.08998 * 109.47049 * 294.99966 * 8 6 5 32 32 H 1.08997 * 109.47245 * 55.00016 * 8 6 5 33 33 H 1.09002 * 109.47043 * 284.04386 * 10 9 8 34 34 H 1.09001 * 109.47508 * 44.03979 * 10 9 8 35 35 H 1.08994 * 109.47334 * 59.41748 * 11 10 9 36 36 H 1.08995 * 109.47674 * 179.42326 * 11 10 9 37 37 H 1.09002 * 109.46623 * 299.42180 * 11 10 9 38 38 H 1.08994 * 109.47320 * 44.30226 * 12 9 8 39 39 H 1.09007 * 109.47007 * 164.30078 * 12 9 8 40 40 H 0.96999 * 120.00340 * 179.97438 * 16 15 13 41 41 H 1.08994 * 109.52273 * 176.88748 * 21 6 5 42 42 H 1.09005 * 109.51643 * 297.07755 * 21 6 5 43 43 H 1.09004 * 109.47835 * 62.37928 * 22 21 6 44 44 H 1.08992 * 109.47913 * 182.40701 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6051 1.9820 0.8415 5 6 3.5657 1.4446 0.1259 6 6 4.0746 2.8881 0.0655 7 1 5.1640 2.8924 0.0989 8 6 3.5230 3.6754 1.2557 9 7 4.1059 5.0238 1.2634 10 6 5.5514 4.9710 1.5191 11 6 6.1868 6.3082 1.1332 12 6 3.4291 5.8843 2.2429 13 6 2.0883 6.3062 1.6993 14 1 1.7385 5.9098 0.7575 15 6 1.3082 7.1981 2.4042 16 7 1.7340 7.6804 3.5513 17 14 -0.3534 7.7215 1.7301 18 1 -1.2233 6.5278 1.5760 19 1 -0.9897 8.6791 2.6700 20 1 -0.1685 8.3732 0.4086 21 6 3.5994 3.5312 -1.2411 22 6 2.0725 3.4497 -1.3151 23 8 1.6646 2.0833 -1.2225 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.9995 0.8709 -0.6932 30 1 3.8534 0.9964 1.0769 31 1 2.4387 3.7488 1.1717 32 1 3.7817 3.1625 2.1820 33 1 5.7263 4.7776 2.5775 34 1 5.9965 4.1725 0.9255 35 1 5.7346 7.1081 1.7195 36 1 7.2578 6.2726 1.3325 37 1 6.0207 6.4967 0.0725 38 1 3.2872 5.3342 3.1731 39 1 4.0385 6.7680 2.4327 40 1 1.1854 8.3081 4.0471 41 1 3.9103 4.5755 -1.2671 42 1 4.0340 2.9995 -2.0877 43 1 1.6379 4.0155 -0.4909 44 1 1.7317 3.8675 -2.2623 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356926191.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:17 Heat of formation + Delta-G solvation = -67.303152 kcal Electronic energy + Delta-G solvation = -20601.154422 eV Core-core repulsion = 17745.591494 eV Total energy + Delta-G solvation = -2855.562928 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.64895 -36.90009 -33.82800 -33.56823 -32.52382 -29.94726 -29.55640 -27.35197 -25.22706 -23.79459 -23.30502 -22.56059 -21.14963 -20.07334 -18.26522 -16.48450 -16.09059 -15.90609 -14.93465 -14.74217 -14.45263 -14.15539 -13.84824 -13.59321 -13.41614 -13.20909 -12.84399 -12.35197 -12.29654 -11.84255 -11.52514 -11.44623 -11.34831 -11.24226 -10.96060 -10.85372 -10.79576 -10.78980 -10.60217 -10.44089 -10.22493 -10.11261 -9.79194 -9.53196 -9.21299 -8.84229 -8.40026 -7.20869 -6.01058 -4.02065 3.33729 3.37908 3.40779 4.08942 4.42888 4.78629 4.87507 5.13296 5.20727 5.26967 5.31565 5.34708 5.46833 5.59415 5.60070 5.68092 5.78972 5.83689 5.90941 5.99467 6.01413 6.04848 6.06903 6.12071 6.16463 6.23689 6.30534 6.34359 6.40740 6.52477 6.55136 6.60808 6.64376 6.80143 6.84002 7.27563 7.36728 7.61238 7.83888 8.15144 8.25382 8.57126 9.05062 9.61878 11.09514 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.015423 B = 0.007694 C = 0.005821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.987842 B = 3638.329776 C = 4808.754261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C 0.088 3.912 4 H 0.062 0.938 5 C -0.142 4.142 6 C -0.088 4.088 7 H 0.068 0.932 8 C 0.064 3.936 9 N -0.532 5.532 10 C 0.048 3.952 11 C -0.142 4.142 12 C 0.191 3.809 13 C -0.502 4.502 14 H 0.061 0.939 15 C 0.055 3.945 16 N -0.900 5.900 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.276 1.276 21 C -0.135 4.135 22 C 0.057 3.943 23 O -0.385 6.385 24 H 0.062 0.938 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.016 0.984 33 H 0.019 0.981 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.043 0.957 37 H 0.056 0.944 38 H -0.014 1.014 39 H 0.036 0.964 40 H 0.261 0.739 41 H 0.088 0.912 42 H 0.053 0.947 43 H 0.066 0.934 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.626 -11.918 -6.704 14.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C 0.030 3.970 4 H 0.080 0.920 5 C -0.180 4.180 6 C -0.107 4.107 7 H 0.087 0.913 8 C -0.064 4.064 9 N -0.256 5.256 10 C -0.081 4.081 11 C -0.200 4.200 12 C 0.066 3.934 13 C -0.540 4.540 14 H 0.079 0.921 15 C -0.146 4.146 16 N -0.540 5.540 17 Si 0.721 3.279 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.201 1.201 21 C -0.173 4.173 22 C -0.019 4.019 23 O -0.304 6.304 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.035 0.965 33 H 0.037 0.963 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.004 0.996 39 H 0.054 0.946 40 H 0.071 0.929 41 H 0.107 0.893 42 H 0.072 0.928 43 H 0.085 0.915 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.400 -11.668 -7.155 14.103 hybrid contribution -0.553 0.223 0.842 1.032 sum 2.847 -11.444 -6.313 13.376 Atomic orbital electron populations 1.21718 0.95460 1.01012 1.02549 1.21532 0.96596 0.94934 1.02114 1.22139 0.93533 0.93449 0.87834 0.91969 1.22206 0.96541 0.97373 1.01912 1.21266 0.99972 0.93377 0.96090 0.91337 1.22113 1.00652 0.89289 0.94354 1.62143 1.00967 1.09791 1.52726 1.22040 0.90830 0.97514 0.97690 1.21733 0.98164 0.98004 1.02093 1.19771 0.94060 0.91445 0.88150 1.21111 1.01431 1.25297 1.06193 0.92057 1.24971 0.98316 0.96306 0.94980 1.69945 1.37976 1.31823 1.14232 0.86633 0.83990 0.78464 0.78793 1.20265 1.21401 1.20143 1.21994 0.96346 1.02670 0.96276 1.22647 0.94545 0.82337 1.02358 1.87844 1.78960 1.25439 1.38205 0.91935 0.93205 0.92784 0.91554 0.91044 0.91580 0.91537 0.89934 0.96545 0.96305 0.92291 0.92065 0.93828 0.92495 0.99642 0.94614 0.92938 0.89320 0.92783 0.91543 0.89667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.81 37.16 0.36 -1.39 16 2 C -0.11 -1.36 5.65 -26.73 -0.15 -1.51 16 3 C 0.09 1.27 2.37 -26.68 -0.06 1.20 16 4 H 0.06 0.99 6.73 -51.93 -0.35 0.64 16 5 C -0.14 -1.91 4.91 -26.59 -0.13 -2.04 16 6 C -0.09 -1.35 2.63 -90.44 -0.24 -1.59 16 7 H 0.07 1.01 6.10 -51.93 -0.32 0.70 16 8 C 0.06 1.20 3.61 -3.82 -0.01 1.19 16 9 N -0.53 -11.04 3.82 -236.08 -0.90 -11.94 16 10 C 0.05 0.86 5.55 -3.83 -0.02 0.83 16 11 C -0.14 -2.41 9.99 37.16 0.37 -2.04 16 12 C 0.19 4.88 4.59 -4.98 -0.02 4.86 16 13 C -0.50 -13.80 8.61 -34.44 -0.30 -14.10 16 14 H 0.06 1.66 7.17 -52.48 -0.38 1.28 16 15 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 16 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16 17 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 C -0.14 -2.08 5.56 -26.59 -0.15 -2.23 16 22 C 0.06 0.93 6.57 37.20 0.24 1.17 16 23 O -0.38 -6.16 9.96 -35.23 -0.35 -6.51 16 24 H 0.06 0.79 7.83 -51.93 -0.41 0.39 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.08 1.71 4.22 -51.93 -0.22 1.49 16 32 H 0.02 0.31 8.12 -51.93 -0.42 -0.11 16 33 H 0.02 0.35 8.05 -51.93 -0.42 -0.07 16 34 H 0.06 0.93 5.87 -51.93 -0.30 0.63 16 35 H 0.06 1.17 6.52 -51.93 -0.34 0.83 16 36 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 38 H -0.01 -0.39 8.00 -51.93 -0.42 -0.81 16 39 H 0.04 0.98 6.24 -51.92 -0.32 0.66 16 40 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.09 1.50 7.70 -51.93 -0.40 1.10 16 42 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.07 1.24 6.01 -51.93 -0.31 0.93 16 44 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 331.52 15.07 5.00 5.00 Total: -1.00 -28.84 331.52 -8.71 -37.55 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -7.97 Total: -0.60 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: -0.20 Total: -14.18 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: -0.16 Total: -37.83 kcal Atomic # 8 Polarization: -6.16 SS G_CDS: -0.35 Total: -6.51 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.84 -8.71 -37.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356926191.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.755 kcal (2) G-P(sol) polarization free energy of solvation -28.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds