Wall clock time and date at job start Mon Mar 30 2020 07:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47114 * 2 1 4 4 H 1.09005 * 109.48949 * 54.97120 * 3 2 1 5 5 C 1.53095 * 109.47943 * 174.99660 * 3 2 1 6 6 C 1.53176 * 109.21349 * 177.62240 * 5 3 2 7 7 H 1.09000 * 109.54646 * 183.12108 * 6 5 3 8 8 C 1.52997 * 109.54516 * 62.94539 * 6 5 3 9 9 N 1.46903 * 109.47311 * 174.99967 * 8 6 5 10 10 C 1.46893 * 110.99998 * 293.95379 * 9 8 6 11 11 C 1.52999 * 109.47384 * 164.04270 * 10 9 8 12 12 C 1.46899 * 110.99850 * 169.99949 * 9 8 6 13 13 C 1.50701 * 109.47431 * 284.30038 * 12 9 8 14 14 H 1.08008 * 119.99513 * 4.60534 * 13 12 9 15 15 C 1.37871 * 120.00514 * 184.60785 * 13 12 9 16 16 N 1.31519 * 119.99844 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00390 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.46801 * 59.99943 * 17 15 13 19 19 H 1.48497 * 109.47482 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47338 * 300.00418 * 17 15 13 21 21 C 1.53183 * 109.03813 * 302.98991 * 6 5 3 22 22 C 1.53092 * 109.16333 * 56.97607 * 21 6 5 23 23 O 1.42897 * 109.41629 * 302.39480 * 22 21 6 24 24 H 1.09002 * 109.46910 * 60.00190 * 1 2 3 25 25 H 1.09000 * 109.47027 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47749 * 300.00502 * 1 2 3 27 27 H 1.08999 * 109.47486 * 239.99967 * 2 1 3 28 28 H 1.09002 * 109.46910 * 119.99810 * 2 1 3 29 29 H 1.09001 * 109.51848 * 57.68734 * 5 3 2 30 30 H 1.08995 * 109.52403 * 297.56085 * 5 3 2 31 31 H 1.08998 * 109.47049 * 294.99966 * 8 6 5 32 32 H 1.08997 * 109.47245 * 55.00016 * 8 6 5 33 33 H 1.09002 * 109.47043 * 284.04386 * 10 9 8 34 34 H 1.09001 * 109.47508 * 44.03979 * 10 9 8 35 35 H 1.08994 * 109.47334 * 59.41748 * 11 10 9 36 36 H 1.08995 * 109.47674 * 179.42326 * 11 10 9 37 37 H 1.09002 * 109.46623 * 299.42180 * 11 10 9 38 38 H 1.08994 * 109.47320 * 44.30226 * 12 9 8 39 39 H 1.09007 * 109.47007 * 164.30078 * 12 9 8 40 40 H 0.96999 * 120.00340 * 179.97438 * 16 15 13 41 41 H 1.08994 * 109.52273 * 176.88748 * 21 6 5 42 42 H 1.09005 * 109.51643 * 297.07755 * 21 6 5 43 43 H 1.09004 * 109.47835 * 62.37928 * 22 21 6 44 44 H 1.08992 * 109.47913 * 182.40701 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6051 1.9820 0.8415 5 6 3.5657 1.4446 0.1259 6 6 4.0746 2.8881 0.0655 7 1 5.1640 2.8924 0.0989 8 6 3.5230 3.6754 1.2557 9 7 4.1059 5.0238 1.2634 10 6 5.5514 4.9710 1.5191 11 6 6.1868 6.3082 1.1332 12 6 3.4291 5.8843 2.2429 13 6 2.0883 6.3062 1.6993 14 1 1.7385 5.9098 0.7575 15 6 1.3082 7.1981 2.4042 16 7 1.7340 7.6804 3.5513 17 14 -0.3534 7.7215 1.7301 18 1 -1.2233 6.5278 1.5760 19 1 -0.9897 8.6791 2.6700 20 1 -0.1685 8.3732 0.4086 21 6 3.5994 3.5312 -1.2411 22 6 2.0725 3.4497 -1.3151 23 8 1.6646 2.0833 -1.2225 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.9995 0.8709 -0.6932 30 1 3.8534 0.9964 1.0769 31 1 2.4387 3.7488 1.1717 32 1 3.7817 3.1625 2.1820 33 1 5.7263 4.7776 2.5775 34 1 5.9965 4.1725 0.9255 35 1 5.7346 7.1081 1.7195 36 1 7.2578 6.2726 1.3325 37 1 6.0207 6.4967 0.0725 38 1 3.2872 5.3342 3.1731 39 1 4.0385 6.7680 2.4327 40 1 1.1854 8.3081 4.0471 41 1 3.9103 4.5755 -1.2671 42 1 4.0340 2.9995 -2.0877 43 1 1.6379 4.0155 -0.4909 44 1 1.7317 3.8675 -2.2623 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356926191.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:16 Heat of formation + Delta-G solvation = -84.182402 kcal Electronic energy + Delta-G solvation = -20601.886361 eV Core-core repulsion = 17745.591494 eV Total energy + Delta-G solvation = -2856.294868 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.91646 -38.46826 -35.17256 -34.82413 -34.43392 -31.53788 -30.67530 -29.19639 -26.74950 -25.17423 -24.59841 -24.27093 -22.22550 -21.68478 -19.61086 -18.58534 -17.27235 -17.16989 -16.74081 -16.30817 -15.89541 -15.70812 -15.25351 -14.90444 -14.63440 -14.35038 -14.24572 -14.01893 -13.76384 -13.46761 -13.06678 -12.86570 -12.69307 -12.59827 -12.59334 -12.42733 -12.13929 -12.05113 -12.01661 -11.98671 -11.75028 -11.43488 -11.31626 -11.20227 -10.90688 -10.57697 -10.11007 -8.96027 -8.18968 -6.27835 1.38586 1.40852 1.48531 2.39062 2.92564 3.11825 3.29620 3.71482 3.94200 3.99143 4.07549 4.23497 4.23907 4.32332 4.43226 4.47426 4.50070 4.59270 4.63349 4.72412 4.73858 4.82749 4.84212 4.97138 5.01009 5.06119 5.07658 5.10157 5.18957 5.22414 5.25801 5.30815 5.34097 5.36843 5.41841 5.46488 5.47415 5.69475 6.11054 6.39314 6.43760 6.68320 6.87951 7.41152 8.91431 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.015423 B = 0.007694 C = 0.005821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.987842 B = 3638.329776 C = 4808.754261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.110 4.110 3 C 0.081 3.919 4 H 0.036 0.964 5 C -0.135 4.135 6 C -0.081 4.081 7 H 0.084 0.916 8 C 0.069 3.931 9 N -0.533 5.533 10 C 0.045 3.955 11 C -0.136 4.136 12 C 0.207 3.793 13 C -0.512 4.512 14 H 0.061 0.939 15 C 0.003 3.997 16 N -0.936 5.936 17 Si 0.959 3.041 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.267 1.267 21 C -0.129 4.129 22 C 0.059 3.941 23 O -0.391 6.391 24 H 0.047 0.953 25 H 0.071 0.929 26 H 0.043 0.957 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.011 0.989 33 H 0.011 0.989 34 H 0.091 0.909 35 H 0.028 0.972 36 H 0.076 0.924 37 H 0.059 0.941 38 H -0.048 1.048 39 H 0.012 0.988 40 H 0.263 0.737 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.032 0.968 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.204 -13.603 -8.337 16.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.147 4.147 3 C 0.024 3.976 4 H 0.054 0.946 5 C -0.173 4.173 6 C -0.100 4.100 7 H 0.102 0.898 8 C -0.059 4.059 9 N -0.258 5.258 10 C -0.083 4.083 11 C -0.194 4.194 12 C 0.081 3.919 13 C -0.551 4.551 14 H 0.079 0.921 15 C -0.195 4.195 16 N -0.577 5.577 17 Si 0.784 3.216 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.192 1.192 21 C -0.167 4.167 22 C -0.017 4.017 23 O -0.310 6.310 24 H 0.067 0.933 25 H 0.090 0.910 26 H 0.062 0.938 27 H 0.096 0.904 28 H 0.108 0.892 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.029 0.971 33 H 0.029 0.971 34 H 0.109 0.891 35 H 0.048 0.952 36 H 0.095 0.905 37 H 0.078 0.922 38 H -0.030 1.030 39 H 0.030 0.970 40 H 0.072 0.928 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.050 0.950 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.988 -13.370 -8.802 16.496 hybrid contribution -0.704 0.715 1.373 1.700 sum 3.285 -12.655 -7.429 15.038 Atomic orbital electron populations 1.21715 0.95636 1.02046 1.01342 1.21553 0.96463 0.93183 1.03530 1.22295 0.94410 0.94531 0.86388 0.94586 1.22175 0.95571 0.96087 1.03483 1.21226 1.00596 0.94024 0.94123 0.89823 1.22086 0.99314 0.88537 0.95991 1.62087 1.02521 1.10517 1.50637 1.22188 0.88970 0.99238 0.97879 1.21690 0.99883 0.96218 1.01594 1.19405 0.93660 0.91055 0.87824 1.21415 1.02370 1.25157 1.06129 0.92093 1.25832 1.02120 0.96371 0.95188 1.70073 1.39517 1.32535 1.15537 0.85590 0.79396 0.78225 0.78396 1.19568 1.20870 1.19181 1.21930 0.95616 1.02016 0.97110 1.22574 0.95168 0.82379 1.01605 1.87841 1.79312 1.25016 1.38874 0.93350 0.91042 0.93807 0.90422 0.89194 0.89513 0.90224 0.92544 0.97064 0.97110 0.89114 0.95241 0.90497 0.92161 1.03021 0.96979 0.92830 0.90938 0.90467 0.94956 0.88445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 9.81 71.98 0.71 -2.59 16 2 C -0.11 -2.36 5.65 30.59 0.17 -2.18 16 3 C 0.08 2.23 2.37 30.63 0.07 2.31 16 4 H 0.04 1.18 6.73 -2.38 -0.02 1.16 16 5 C -0.14 -3.28 4.91 30.69 0.15 -3.13 16 6 C -0.08 -2.33 2.63 -10.67 -0.03 -2.35 16 7 H 0.08 2.18 6.10 -2.39 -0.01 2.17 16 8 C 0.07 2.59 3.61 86.30 0.31 2.91 16 9 N -0.53 -22.50 3.82 -900.82 -3.44 -25.93 16 10 C 0.05 1.58 5.55 86.30 0.48 2.06 16 11 C -0.14 -4.50 9.99 71.98 0.72 -3.78 16 12 C 0.21 11.07 4.59 85.56 0.39 11.46 16 13 C -0.51 -29.14 8.61 25.60 0.22 -28.92 16 14 H 0.06 3.40 7.17 -2.91 -0.02 3.38 16 15 C 0.00 0.15 5.46 84.65 0.46 0.61 16 16 N -0.94 -57.00 13.29 21.45 0.28 -56.72 16 17 Si 0.96 45.00 29.54 68.60 2.03 47.03 16 18 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 19 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 20 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 21 C -0.13 -3.76 5.56 30.69 0.17 -3.59 16 22 C 0.06 1.89 6.57 72.01 0.47 2.36 16 23 O -0.39 -12.09 9.96 -148.98 -1.48 -13.57 16 24 H 0.05 1.18 7.83 -2.39 -0.02 1.17 16 25 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.06 2.43 4.22 -2.39 -0.01 2.42 16 32 H 0.01 0.43 8.12 -2.39 -0.02 0.41 16 33 H 0.01 0.39 8.05 -2.39 -0.02 0.37 16 34 H 0.09 2.62 5.87 -2.39 -0.01 2.61 16 35 H 0.03 1.14 6.52 -2.39 -0.02 1.12 16 36 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 38 H -0.05 -2.82 8.00 -2.39 -0.02 -2.84 16 39 H 0.01 0.70 6.24 -2.38 -0.01 0.69 16 40 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 41 H 0.07 2.36 7.70 -2.39 -0.02 2.34 16 42 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 43 H 0.03 1.25 6.01 -2.38 -0.01 1.23 16 44 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 Total: -1.00 -63.91 331.52 2.63 -61.28 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: 0.94 Total: 12.76 kcal Atomic # 6 Polarization: -29.15 SS G_CDS: 4.30 Total: -24.84 kcal Atomic # 7 Polarization: -79.50 SS G_CDS: -3.15 Total: -82.65 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: -1.48 Total: -13.57 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -63.91 2.63 -61.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356926191.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.900 kcal (2) G-P(sol) polarization free energy of solvation -63.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds