Wall clock time and date at job start Mon Mar 30 2020 07:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47293 * 2 1 4 4 H 1.08998 * 109.48194 * 305.02805 * 3 2 1 5 5 C 1.53093 * 109.48558 * 184.99761 * 3 2 1 6 6 C 1.53178 * 109.16166 * 297.61836 * 5 3 2 7 7 H 1.08991 * 109.54683 * 62.88424 * 6 5 3 8 8 C 1.52999 * 109.54147 * 183.15276 * 6 5 3 9 9 N 1.46904 * 109.47325 * 184.55437 * 8 6 5 10 10 C 1.46900 * 110.99663 * 66.03983 * 9 8 6 11 11 C 1.52997 * 109.47048 * 61.31240 * 10 9 8 12 12 C 1.46898 * 111.00150 * 189.99797 * 9 8 6 13 13 C 1.50699 * 109.46878 * 168.77461 * 12 9 8 14 14 H 1.08003 * 120.00057 * 355.02107 * 13 12 9 15 15 C 1.37873 * 119.99852 * 175.01684 * 13 12 9 16 16 N 1.31513 * 120.00276 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00287 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47128 * 89.99917 * 17 15 13 19 19 H 1.48490 * 109.47512 * 210.00199 * 17 15 13 20 20 H 1.48500 * 109.46908 * 330.00323 * 17 15 13 21 21 C 1.53179 * 109.03581 * 303.01424 * 6 5 3 22 22 C 1.53093 * 109.16335 * 56.98220 * 21 6 5 23 23 O 1.42900 * 109.42325 * 302.38819 * 22 21 6 24 24 H 1.08996 * 109.47453 * 299.99887 * 1 2 3 25 25 H 1.09001 * 109.46884 * 60.00094 * 1 2 3 26 26 H 1.09003 * 109.47091 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47753 * 240.00223 * 2 1 3 28 28 H 1.09000 * 109.47362 * 120.00120 * 2 1 3 29 29 H 1.08995 * 109.52297 * 177.70960 * 5 3 2 30 30 H 1.08997 * 109.51704 * 57.52014 * 5 3 2 31 31 H 1.08997 * 109.47060 * 304.55322 * 8 6 5 32 32 H 1.09001 * 109.47562 * 64.55190 * 8 6 5 33 33 H 1.09007 * 109.46603 * 181.30751 * 10 9 8 34 34 H 1.08997 * 109.47343 * 301.30509 * 10 9 8 35 35 H 1.09004 * 109.46816 * 299.43948 * 11 10 9 36 36 H 1.08997 * 109.47510 * 59.43960 * 11 10 9 37 37 H 1.08997 * 109.47436 * 179.44305 * 11 10 9 38 38 H 1.08998 * 109.47053 * 288.77395 * 12 9 8 39 39 H 1.08997 * 109.47038 * 48.77358 * 12 9 8 40 40 H 0.96999 * 120.00530 * 180.02562 * 16 15 13 41 41 H 1.09004 * 109.52327 * 297.08120 * 21 6 5 42 42 H 1.08999 * 109.52054 * 176.88676 * 21 6 5 43 43 H 1.09002 * 109.47811 * 62.37205 * 22 21 6 44 44 H 1.08998 * 109.48442 * 182.39305 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6051 1.9818 -0.8415 5 6 3.5658 1.4447 -0.1257 6 6 4.1715 0.7377 1.0907 7 1 3.8505 -0.3038 1.1044 8 6 5.6981 0.8037 1.0133 9 7 6.2784 0.0327 2.1209 10 6 5.9826 -1.3991 1.9774 11 6 6.5990 -1.9193 0.6773 12 6 7.7255 0.2639 2.2219 13 6 8.2371 -0.3127 3.5169 14 1 7.5447 -0.7300 4.2330 15 6 9.5891 -0.3076 3.7873 16 7 10.4322 0.2009 2.9154 17 14 10.2234 -1.0230 5.3921 18 1 10.5181 -2.4668 5.2082 19 1 11.4633 -0.3121 5.7951 20 1 9.1930 -0.8588 6.4487 21 6 3.6923 1.4384 2.3657 22 6 2.1617 1.4366 2.3952 23 8 1.6630 2.0815 1.2216 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.9264 2.4724 -0.1667 30 1 3.8570 0.9189 -1.0350 31 1 6.0323 0.3842 0.0644 32 1 6.0210 1.8423 1.0852 33 1 6.4039 -1.9435 2.8226 34 1 4.9030 -1.5463 1.9521 35 1 6.1706 -1.3816 -0.1685 36 1 7.6775 -1.7631 0.6985 37 1 6.3881 -2.9838 0.5756 38 1 8.2299 -0.2189 1.3849 39 1 7.9249 1.3352 2.1973 40 1 11.3834 0.2042 3.1054 41 1 4.0555 2.4661 2.3750 42 1 4.0741 0.9082 3.2381 43 1 1.8000 0.4088 2.4267 44 1 1.8145 1.9713 3.2793 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356926192.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:19 Heat of formation + Delta-G solvation = -64.420410 kcal Electronic energy + Delta-G solvation = -20325.927064 eV Core-core repulsion = 17470.489141 eV Total energy + Delta-G solvation = -2855.437923 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.92947 -37.34974 -33.80008 -33.40478 -32.39318 -30.10886 -29.42034 -27.69627 -25.42803 -23.54029 -23.47256 -22.92122 -21.54869 -19.26024 -18.76932 -16.47225 -16.17470 -15.79182 -15.28973 -15.00622 -14.73864 -14.46409 -13.75068 -13.62929 -13.57701 -12.94526 -12.73807 -12.66245 -12.26205 -11.93583 -11.72616 -11.58161 -11.43110 -11.21028 -11.11392 -10.99836 -10.88714 -10.73013 -10.61888 -10.44755 -10.24028 -10.07767 -9.75864 -9.63613 -9.30620 -9.03780 -8.41434 -7.12014 -6.00763 -4.01652 3.31937 3.38457 3.42642 3.95140 4.43221 4.69108 4.81932 4.94074 4.98133 5.09705 5.23135 5.34455 5.37706 5.41237 5.45594 5.58861 5.65455 5.70987 5.77119 5.84969 5.88126 5.94525 6.00717 6.02680 6.09717 6.18710 6.20252 6.21422 6.29561 6.37115 6.50731 6.63339 6.71257 6.73902 6.92690 7.34214 7.35764 7.47332 7.84092 8.14384 8.24728 8.60010 9.06813 9.62512 11.09879 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.035273 B = 0.004623 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.617896 B = 6055.733795 C = 6208.056278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.159 4.159 3 C 0.093 3.907 4 H 0.095 0.905 5 C -0.145 4.145 6 C -0.083 4.083 7 H 0.071 0.929 8 C 0.057 3.943 9 N -0.532 5.532 10 C 0.060 3.940 11 C -0.189 4.189 12 C 0.188 3.812 13 C -0.503 4.503 14 H 0.062 0.938 15 C 0.055 3.945 16 N -0.900 5.900 17 Si 0.895 3.105 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.273 1.273 21 C -0.138 4.138 22 C 0.055 3.945 23 O -0.379 6.379 24 H 0.058 0.942 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.027 0.973 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.051 0.949 35 H 0.044 0.956 36 H 0.067 0.933 37 H 0.045 0.955 38 H 0.002 0.998 39 H 0.023 0.977 40 H 0.260 0.740 41 H 0.065 0.935 42 H 0.087 0.913 43 H 0.049 0.951 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.488 -0.185 -6.161 17.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.196 4.196 3 C 0.035 3.965 4 H 0.113 0.887 5 C -0.183 4.183 6 C -0.102 4.102 7 H 0.089 0.911 8 C -0.072 4.072 9 N -0.255 5.255 10 C -0.068 4.068 11 C -0.248 4.248 12 C 0.063 3.937 13 C -0.542 4.542 14 H 0.080 0.920 15 C -0.146 4.146 16 N -0.540 5.540 17 Si 0.723 3.277 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.198 1.198 21 C -0.176 4.176 22 C -0.021 4.021 23 O -0.298 6.298 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.045 0.955 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.064 0.936 38 H 0.019 0.981 39 H 0.041 0.959 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.106 0.894 43 H 0.067 0.933 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -16.613 0.193 -5.727 17.573 hybrid contribution 1.191 -0.922 -0.013 1.506 sum -15.422 -0.729 -5.741 16.472 Atomic orbital electron populations 1.21698 0.95488 1.01175 1.02092 1.22194 0.96604 0.97776 1.03047 1.22162 0.93966 0.92851 0.87494 0.88691 1.22234 0.95398 1.01798 0.98914 1.21207 0.95734 0.99266 0.93955 0.91118 1.22096 0.92905 0.98735 0.93447 1.62309 1.16970 1.06009 1.40244 1.21969 0.98010 0.90040 0.96788 1.22383 1.03097 0.99843 0.99442 1.19767 0.80566 0.96581 0.96752 1.21156 0.91565 1.38508 1.02936 0.91982 1.24978 0.96941 0.95744 0.96962 1.69956 1.02675 1.46050 1.35305 0.86541 0.78323 0.78940 0.83874 1.20820 1.21325 1.19799 1.22087 0.94448 1.01695 0.99371 1.22661 0.94395 0.97403 0.87665 1.87937 1.74749 1.53367 1.13771 0.92257 0.92964 0.93085 0.91239 0.90920 0.91157 0.91417 0.95540 0.91761 0.90301 0.93103 0.93720 0.91379 0.93615 0.98075 0.95915 0.93014 0.91604 0.89441 0.93309 0.89434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.81 37.16 0.36 -0.99 16 2 C -0.16 -1.62 4.74 -26.73 -0.13 -1.75 16 3 C 0.09 1.06 3.29 -26.68 -0.09 0.97 16 4 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 5 C -0.15 -1.79 4.93 -26.59 -0.13 -1.92 16 6 C -0.08 -1.18 1.88 -90.44 -0.17 -1.35 16 7 H 0.07 1.01 4.92 -51.93 -0.26 0.75 16 8 C 0.06 1.00 4.14 -3.82 -0.02 0.98 16 9 N -0.53 -11.05 4.22 -236.08 -1.00 -12.04 16 10 C 0.06 1.14 5.68 -3.83 -0.02 1.12 16 11 C -0.19 -3.38 9.26 37.16 0.34 -3.03 16 12 C 0.19 4.83 4.54 -4.98 -0.02 4.80 16 13 C -0.50 -13.97 8.39 -34.44 -0.29 -14.26 16 14 H 0.06 1.71 7.39 -52.48 -0.39 1.33 16 15 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 16 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 17 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 21 C -0.14 -1.98 5.27 -26.59 -0.14 -2.12 16 22 C 0.06 0.68 6.52 37.21 0.24 0.93 16 23 O -0.38 -4.98 10.14 -35.23 -0.36 -5.33 16 24 H 0.06 0.59 7.82 -51.93 -0.41 0.18 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.81 4.98 -51.93 -0.26 0.55 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.03 0.47 6.05 -51.93 -0.31 0.16 16 32 H 0.06 1.19 7.92 -51.93 -0.41 0.78 16 33 H 0.08 1.64 6.98 -51.93 -0.36 1.28 16 34 H 0.05 0.84 6.32 -51.93 -0.33 0.51 16 35 H 0.04 0.74 6.33 -51.93 -0.33 0.41 16 36 H 0.07 1.42 6.29 -51.93 -0.33 1.10 16 37 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.00 0.04 6.02 -51.93 -0.31 -0.27 16 39 H 0.02 0.63 7.91 -51.93 -0.41 0.22 16 40 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.09 1.39 7.85 -51.93 -0.41 0.98 16 43 H 0.05 0.57 6.23 -51.93 -0.32 0.25 16 44 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 326.99 15.07 4.93 4.93 Total: -1.00 -28.99 326.99 -8.63 -37.63 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -7.77 Total: -0.64 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: -0.15 Total: -15.17 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: -0.26 Total: -38.00 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: -0.36 Total: -5.33 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.99 -8.63 -37.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356926192.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.793 kcal (2) G-P(sol) polarization free energy of solvation -28.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds