Wall clock time and date at job start Mon Mar 30 2020 07:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47071 * 2 1 4 4 H 1.09002 * 109.48330 * 54.99887 * 3 2 1 5 5 C 1.53090 * 109.48116 * 175.02598 * 3 2 1 6 6 C 1.53174 * 109.16295 * 177.59425 * 5 3 2 7 7 H 1.09004 * 109.54855 * 62.88014 * 6 5 3 8 8 C 1.53003 * 109.54533 * 183.06269 * 6 5 3 9 9 N 1.46896 * 109.47332 * 184.99889 * 8 6 5 10 10 C 1.46901 * 111.00309 * 66.04122 * 9 8 6 11 11 C 1.52999 * 109.46757 * 61.28604 * 10 9 8 12 12 C 1.46896 * 110.99888 * 190.00002 * 9 8 6 13 13 C 1.50704 * 109.47244 * 168.76688 * 12 9 8 14 14 H 1.08003 * 119.99624 * 355.01791 * 13 12 9 15 15 C 1.37875 * 120.00123 * 175.02019 * 13 12 9 16 16 N 1.31518 * 120.00211 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99946 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46814 * 60.00344 * 17 15 13 19 19 H 1.48501 * 109.47285 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47426 * 300.00335 * 17 15 13 21 21 C 1.53183 * 109.03573 * 303.01363 * 6 5 3 22 22 C 1.53097 * 109.16107 * 56.98451 * 21 6 5 23 23 O 1.42902 * 109.42170 * 302.39762 * 22 21 6 24 24 H 1.08998 * 109.47050 * 59.99892 * 1 2 3 25 25 H 1.09001 * 109.46746 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46972 * 299.99751 * 1 2 3 27 27 H 1.08998 * 109.46972 * 240.00249 * 2 1 3 28 28 H 1.08998 * 109.47050 * 120.00108 * 2 1 3 29 29 H 1.08999 * 109.51845 * 297.49451 * 5 3 2 30 30 H 1.08996 * 109.52246 * 57.68346 * 5 3 2 31 31 H 1.08997 * 109.46897 * 304.99999 * 8 6 5 32 32 H 1.08996 * 109.46903 * 64.99309 * 8 6 5 33 33 H 1.08998 * 109.47193 * 181.28157 * 10 9 8 34 34 H 1.08994 * 109.47233 * 301.28327 * 10 9 8 35 35 H 1.09010 * 109.46745 * 299.43357 * 11 10 9 36 36 H 1.09004 * 109.47517 * 59.43469 * 11 10 9 37 37 H 1.08999 * 109.47173 * 179.44181 * 11 10 9 38 38 H 1.09000 * 109.47330 * 288.76318 * 12 9 8 39 39 H 1.09004 * 109.47392 * 48.76938 * 12 9 8 40 40 H 0.96998 * 120.00245 * 180.02562 * 16 15 13 41 41 H 1.09000 * 109.52663 * 176.88579 * 21 6 5 42 42 H 1.09001 * 109.52501 * 297.08316 * 21 6 5 43 43 H 1.09000 * 109.47994 * 62.37006 * 22 21 6 44 44 H 1.08997 * 109.48172 * 182.40150 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9818 0.8418 5 6 3.5658 1.4446 0.1251 6 6 4.0734 2.8885 0.0639 7 1 3.6794 3.4498 0.9113 8 6 5.6026 2.8960 0.1115 9 7 6.0839 4.2825 0.1734 10 6 5.6917 4.9200 1.4375 11 6 6.3173 4.1587 2.6080 12 6 7.5390 4.3437 -0.0179 13 6 7.9588 5.7764 -0.2239 14 1 7.2118 6.5532 -0.2941 15 6 9.2965 6.0954 -0.3227 16 7 10.2062 5.1494 -0.2377 17 14 9.8168 7.8711 -0.5787 18 1 9.3340 8.6970 0.5572 19 1 11.2980 7.9473 -0.6522 20 1 9.2320 8.3807 -1.8450 21 6 3.5964 3.5308 -1.2424 22 6 2.0694 3.4482 -1.3148 23 8 1.6625 2.0815 -1.2212 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8538 0.9974 1.0765 30 1 3.9993 0.8711 -0.6941 31 1 5.9413 2.3541 0.9945 32 1 5.9963 2.4144 -0.7835 33 1 6.0410 5.9524 1.4474 34 1 4.6060 4.9028 1.5316 35 1 5.9602 3.1288 2.6039 36 1 7.4027 4.1673 2.5085 37 1 6.0345 4.6375 3.5455 38 1 8.0386 3.9420 0.8636 39 1 7.8157 3.7548 -0.8924 40 1 11.1473 5.3738 -0.3068 41 1 3.9063 4.5755 -1.2691 42 1 4.0304 2.9994 -2.0893 43 1 1.6353 4.0137 -0.4903 44 1 1.7272 3.8654 -2.2618 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356926194.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:22 Heat of formation + Delta-G solvation = -68.313109 kcal Electronic energy + Delta-G solvation = -20037.072166 eV Core-core repulsion = 17181.465443 eV Total energy + Delta-G solvation = -2855.606723 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.61169 -37.33786 -34.03154 -33.76511 -32.40247 -29.74682 -29.42495 -27.72001 -25.47672 -23.60921 -23.51521 -22.63451 -21.02911 -20.00262 -18.81522 -16.37589 -16.20210 -15.79861 -15.25258 -14.99184 -14.54274 -14.50085 -13.80320 -13.66146 -13.54965 -13.23980 -12.79916 -12.63872 -12.02713 -11.83461 -11.70798 -11.55985 -11.43582 -11.14206 -11.13235 -11.04726 -10.92594 -10.75548 -10.60937 -10.41438 -10.24245 -10.12479 -9.90650 -9.63599 -9.34823 -9.05451 -8.40880 -7.12325 -6.00621 -4.01607 3.33852 3.38018 3.40864 3.85203 4.42414 4.59938 4.89748 5.02356 5.05750 5.08161 5.20274 5.29427 5.34513 5.40043 5.48054 5.54398 5.65584 5.76323 5.78223 5.82668 5.89978 5.93885 6.00680 6.02250 6.09692 6.11745 6.18558 6.22238 6.29333 6.36230 6.50322 6.62395 6.70687 6.72969 6.92894 7.34444 7.36323 7.47289 7.83835 8.14343 8.24649 8.59920 9.06528 9.62432 11.09984 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.038911 B = 0.004279 C = 0.004140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.408915 B = 6542.507600 C = 6762.188258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C 0.093 3.907 4 H 0.053 0.947 5 C -0.145 4.145 6 C -0.083 4.083 7 H 0.068 0.932 8 C 0.058 3.942 9 N -0.532 5.532 10 C 0.060 3.940 11 C -0.189 4.189 12 C 0.189 3.811 13 C -0.504 4.504 14 H 0.062 0.938 15 C 0.054 3.946 16 N -0.900 5.900 17 Si 0.896 3.104 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.276 1.276 21 C -0.139 4.139 22 C 0.061 3.939 23 O -0.383 6.383 24 H 0.061 0.939 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.027 0.973 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.051 0.949 35 H 0.044 0.956 36 H 0.067 0.933 37 H 0.045 0.955 38 H 0.002 0.998 39 H 0.023 0.977 40 H 0.261 0.739 41 H 0.088 0.912 42 H 0.066 0.934 43 H 0.044 0.956 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.140 -7.559 2.183 17.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C 0.035 3.965 4 H 0.071 0.929 5 C -0.183 4.183 6 C -0.102 4.102 7 H 0.086 0.914 8 C -0.071 4.071 9 N -0.256 5.256 10 C -0.068 4.068 11 C -0.248 4.248 12 C 0.064 3.936 13 C -0.542 4.542 14 H 0.080 0.920 15 C -0.146 4.146 16 N -0.540 5.540 17 Si 0.724 3.276 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.202 1.202 21 C -0.177 4.177 22 C -0.016 4.016 23 O -0.302 6.302 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.045 0.955 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.064 0.936 38 H 0.019 0.981 39 H 0.041 0.959 40 H 0.071 0.929 41 H 0.106 0.894 42 H 0.085 0.915 43 H 0.062 0.938 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.249 -7.416 1.631 17.935 hybrid contribution 1.111 0.629 0.785 1.499 sum -15.138 -6.787 2.416 16.765 Atomic orbital electron populations 1.21716 0.95520 1.01215 1.02179 1.21550 0.96430 0.94826 1.02583 1.22084 0.93788 0.93518 0.87115 0.92901 1.22257 0.95669 0.97937 1.02455 1.21199 0.96306 0.94555 0.98141 0.91394 1.22081 0.93182 0.91786 1.00044 1.62304 1.17573 1.13728 1.31959 1.21974 0.97646 0.99665 0.87564 1.22385 1.03159 1.00008 0.99215 1.19764 0.80425 0.97534 0.95913 1.21120 0.91431 0.93042 1.48653 0.92029 1.24983 0.96656 0.97355 0.95649 1.69949 1.00849 1.32261 1.50940 0.86591 0.77194 0.85017 0.78770 1.20334 1.21434 1.20207 1.22099 0.94525 1.03275 0.97758 1.22629 0.95104 0.82439 1.01394 1.87867 1.78687 1.25160 1.38488 0.91960 0.93026 0.93102 0.91178 0.90868 0.91440 0.91122 0.95505 0.91728 0.90273 0.93067 0.93725 0.91372 0.93599 0.98058 0.95917 0.92949 0.89373 0.91543 0.93769 0.89288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.81 37.16 0.36 -0.98 16 2 C -0.12 -1.15 5.64 -26.73 -0.15 -1.30 16 3 C 0.09 1.08 2.64 -26.68 -0.07 1.01 16 4 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 5 C -0.14 -1.81 4.71 -26.59 -0.13 -1.94 16 6 C -0.08 -1.21 2.19 -90.43 -0.20 -1.41 16 7 H 0.07 0.99 6.31 -51.93 -0.33 0.67 16 8 C 0.06 1.02 4.13 -3.82 -0.02 1.01 16 9 N -0.53 -11.11 4.24 -236.08 -1.00 -12.11 16 10 C 0.06 1.14 5.68 -3.82 -0.02 1.12 16 11 C -0.19 -3.39 9.26 37.16 0.34 -3.05 16 12 C 0.19 4.84 4.54 -4.98 -0.02 4.82 16 13 C -0.50 -14.01 8.39 -34.44 -0.29 -14.30 16 14 H 0.06 1.70 7.39 -52.48 -0.39 1.31 16 15 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 16 N -0.90 -26.73 13.29 55.43 0.74 -26.00 16 17 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 21 C -0.14 -2.00 5.28 -26.59 -0.14 -2.14 16 22 C 0.06 0.76 6.84 37.21 0.25 1.02 16 23 O -0.38 -5.09 9.94 -35.23 -0.35 -5.44 16 24 H 0.06 0.62 7.82 -51.93 -0.41 0.21 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.03 0.48 6.05 -51.93 -0.31 0.16 16 32 H 0.06 1.20 7.92 -51.93 -0.41 0.79 16 33 H 0.08 1.65 6.98 -51.93 -0.36 1.29 16 34 H 0.05 0.85 6.31 -51.93 -0.33 0.53 16 35 H 0.04 0.74 6.33 -51.92 -0.33 0.41 16 36 H 0.07 1.43 6.29 -51.93 -0.33 1.10 16 37 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.00 0.05 6.02 -51.93 -0.31 -0.27 16 39 H 0.02 0.63 7.91 -51.93 -0.41 0.22 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.09 1.40 7.87 -51.93 -0.41 0.99 16 42 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 333.97 15.07 5.03 5.03 Total: -1.00 -29.06 333.97 -8.88 -37.94 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -8.11 Total: -1.37 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -0.17 Total: -14.70 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: -0.26 Total: -38.10 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: -0.35 Total: -5.44 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.06 -8.88 -37.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356926194.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.372 kcal (2) G-P(sol) polarization free energy of solvation -29.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds