Wall clock time and date at job start Mon Mar 30 2020 07:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47071 * 2 1 4 4 H 1.09002 * 109.48330 * 54.99887 * 3 2 1 5 5 C 1.53090 * 109.48116 * 175.02598 * 3 2 1 6 6 C 1.53174 * 109.16295 * 177.59425 * 5 3 2 7 7 H 1.09004 * 109.54855 * 62.88014 * 6 5 3 8 8 C 1.53003 * 109.54533 * 183.06269 * 6 5 3 9 9 N 1.46896 * 109.47332 * 184.99889 * 8 6 5 10 10 C 1.46901 * 111.00309 * 66.04122 * 9 8 6 11 11 C 1.52999 * 109.46757 * 61.28604 * 10 9 8 12 12 C 1.46896 * 110.99888 * 190.00002 * 9 8 6 13 13 C 1.50704 * 109.47244 * 168.76688 * 12 9 8 14 14 H 1.08003 * 119.99624 * 355.01791 * 13 12 9 15 15 C 1.37875 * 120.00123 * 175.02019 * 13 12 9 16 16 N 1.31518 * 120.00211 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99946 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46814 * 60.00344 * 17 15 13 19 19 H 1.48501 * 109.47285 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47426 * 300.00335 * 17 15 13 21 21 C 1.53183 * 109.03573 * 303.01363 * 6 5 3 22 22 C 1.53097 * 109.16107 * 56.98451 * 21 6 5 23 23 O 1.42902 * 109.42170 * 302.39762 * 22 21 6 24 24 H 1.08998 * 109.47050 * 59.99892 * 1 2 3 25 25 H 1.09001 * 109.46746 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46972 * 299.99751 * 1 2 3 27 27 H 1.08998 * 109.46972 * 240.00249 * 2 1 3 28 28 H 1.08998 * 109.47050 * 120.00108 * 2 1 3 29 29 H 1.08999 * 109.51845 * 297.49451 * 5 3 2 30 30 H 1.08996 * 109.52246 * 57.68346 * 5 3 2 31 31 H 1.08997 * 109.46897 * 304.99999 * 8 6 5 32 32 H 1.08996 * 109.46903 * 64.99309 * 8 6 5 33 33 H 1.08998 * 109.47193 * 181.28157 * 10 9 8 34 34 H 1.08994 * 109.47233 * 301.28327 * 10 9 8 35 35 H 1.09010 * 109.46745 * 299.43357 * 11 10 9 36 36 H 1.09004 * 109.47517 * 59.43469 * 11 10 9 37 37 H 1.08999 * 109.47173 * 179.44181 * 11 10 9 38 38 H 1.09000 * 109.47330 * 288.76318 * 12 9 8 39 39 H 1.09004 * 109.47392 * 48.76938 * 12 9 8 40 40 H 0.96998 * 120.00245 * 180.02562 * 16 15 13 41 41 H 1.09000 * 109.52663 * 176.88579 * 21 6 5 42 42 H 1.09001 * 109.52501 * 297.08316 * 21 6 5 43 43 H 1.09000 * 109.47994 * 62.37006 * 22 21 6 44 44 H 1.08997 * 109.48172 * 182.40150 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9818 0.8418 5 6 3.5658 1.4446 0.1251 6 6 4.0734 2.8885 0.0639 7 1 3.6794 3.4498 0.9113 8 6 5.6026 2.8960 0.1115 9 7 6.0839 4.2825 0.1734 10 6 5.6917 4.9200 1.4375 11 6 6.3173 4.1587 2.6080 12 6 7.5390 4.3437 -0.0179 13 6 7.9588 5.7764 -0.2239 14 1 7.2118 6.5532 -0.2941 15 6 9.2965 6.0954 -0.3227 16 7 10.2062 5.1494 -0.2377 17 14 9.8168 7.8711 -0.5787 18 1 9.3340 8.6970 0.5572 19 1 11.2980 7.9473 -0.6522 20 1 9.2320 8.3807 -1.8450 21 6 3.5964 3.5308 -1.2424 22 6 2.0694 3.4482 -1.3148 23 8 1.6625 2.0815 -1.2212 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8538 0.9974 1.0765 30 1 3.9993 0.8711 -0.6941 31 1 5.9413 2.3541 0.9945 32 1 5.9963 2.4144 -0.7835 33 1 6.0410 5.9524 1.4474 34 1 4.6060 4.9028 1.5316 35 1 5.9602 3.1288 2.6039 36 1 7.4027 4.1673 2.5085 37 1 6.0345 4.6375 3.5455 38 1 8.0386 3.9420 0.8636 39 1 7.8157 3.7548 -0.8924 40 1 11.1473 5.3738 -0.3068 41 1 3.9063 4.5755 -1.2691 42 1 4.0304 2.9994 -2.0893 43 1 1.6353 4.0137 -0.4903 44 1 1.7272 3.8654 -2.2618 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356926194.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:21 Heat of formation + Delta-G solvation = -85.476514 kcal Electronic energy + Delta-G solvation = -20037.816427 eV Core-core repulsion = 17181.465443 eV Total energy + Delta-G solvation = -2856.350984 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.71268 -38.86417 -35.30650 -34.82069 -34.31173 -31.06426 -30.68845 -29.42367 -27.01647 -25.14381 -24.63393 -24.07131 -22.06673 -21.28559 -20.26470 -18.35691 -17.33212 -17.03314 -16.68209 -16.54930 -16.28580 -15.47080 -15.22424 -14.84707 -14.63290 -14.50379 -14.16200 -13.91829 -13.71990 -13.25345 -13.11834 -12.80530 -12.69025 -12.62952 -12.55887 -12.44994 -12.41040 -12.03126 -11.99500 -11.83188 -11.72414 -11.44320 -11.35116 -11.09316 -10.99149 -10.58331 -10.27551 -8.86355 -8.18158 -6.27795 1.40451 1.43449 1.51156 2.40714 2.92935 3.14100 3.30636 3.75659 3.87001 4.00294 4.07956 4.25788 4.27736 4.32393 4.39187 4.47288 4.51326 4.56474 4.64288 4.67553 4.73439 4.78371 4.88430 4.95188 4.96858 5.00022 5.04275 5.09539 5.15225 5.22251 5.24623 5.27291 5.39067 5.42009 5.49314 5.50572 5.53906 5.69304 6.10469 6.39735 6.41163 6.71149 6.89715 7.41736 8.92160 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.038911 B = 0.004279 C = 0.004140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.408915 B = 6542.507600 C = 6762.188258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C 0.091 3.909 4 H 0.062 0.938 5 C -0.140 4.140 6 C -0.074 4.074 7 H 0.076 0.924 8 C 0.060 3.940 9 N -0.537 5.537 10 C 0.060 3.940 11 C -0.180 4.180 12 C 0.204 3.796 13 C -0.517 4.517 14 H 0.061 0.939 15 C 0.001 3.999 16 N -0.936 5.936 17 Si 0.966 3.034 18 H -0.267 1.267 19 H -0.285 1.285 20 H -0.269 1.269 21 C -0.136 4.136 22 C 0.066 3.934 23 O -0.394 6.394 24 H 0.049 0.951 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.029 0.971 32 H 0.047 0.953 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.058 0.942 36 H 0.029 0.971 37 H 0.072 0.928 38 H -0.022 1.022 39 H -0.009 1.009 40 H 0.263 0.737 41 H 0.071 0.929 42 H 0.051 0.949 43 H 0.057 0.943 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.053 -7.206 3.066 19.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.153 4.153 3 C 0.034 3.966 4 H 0.080 0.920 5 C -0.178 4.178 6 C -0.093 4.093 7 H 0.094 0.906 8 C -0.068 4.068 9 N -0.260 5.260 10 C -0.068 4.068 11 C -0.238 4.238 12 C 0.078 3.922 13 C -0.556 4.556 14 H 0.079 0.921 15 C -0.197 4.197 16 N -0.577 5.577 17 Si 0.791 3.209 18 H -0.192 1.192 19 H -0.210 1.210 20 H -0.194 1.194 21 C -0.174 4.174 22 C -0.011 4.011 23 O -0.314 6.314 24 H 0.068 0.932 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.108 0.892 29 H 0.100 0.900 30 H 0.080 0.920 31 H 0.047 0.953 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.077 0.923 36 H 0.048 0.952 37 H 0.091 0.909 38 H -0.004 1.004 39 H 0.009 0.991 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -18.189 -7.069 2.519 19.676 hybrid contribution 1.687 0.465 0.514 1.824 sum -16.502 -6.604 3.033 18.032 Atomic orbital electron populations 1.21691 0.94813 1.02010 1.01859 1.21577 0.97028 0.93589 1.03093 1.22218 0.92872 0.94683 0.86852 0.91958 1.22226 0.96512 0.96162 1.02913 1.21120 0.93420 0.96327 0.98413 0.90593 1.22121 0.95587 0.89788 0.99295 1.62202 1.14268 1.15930 1.33592 1.22010 0.99486 0.98332 0.86939 1.22274 1.00452 1.01075 1.00018 1.19395 0.83411 0.96007 0.93397 1.21426 0.91783 0.93917 1.48461 0.92069 1.25887 0.96690 1.01921 0.95197 1.70083 1.01186 1.34580 1.51874 0.85487 0.76808 0.79527 0.79100 1.19178 1.21030 1.19448 1.22037 0.96303 1.01882 0.97172 1.22619 0.93254 0.82561 1.02647 1.87872 1.78641 1.25436 1.39456 0.93214 0.91739 0.92449 0.91848 0.89216 0.90026 0.92004 0.95311 0.93411 0.92434 0.89796 0.92271 0.95170 0.90942 1.00426 0.99136 0.92836 0.91036 0.93066 0.92476 0.88154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.81 71.98 0.71 -1.57 16 2 C -0.12 -1.99 5.64 30.60 0.17 -1.82 16 3 C 0.09 1.91 2.64 30.63 0.08 1.99 16 4 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 5 C -0.14 -3.24 4.71 30.68 0.14 -3.10 16 6 C -0.07 -2.05 2.19 -10.67 -0.02 -2.07 16 7 H 0.08 2.01 6.31 -2.38 -0.02 1.99 16 8 C 0.06 2.14 4.13 86.30 0.36 2.50 16 9 N -0.54 -22.72 4.24 -900.81 -3.82 -26.54 16 10 C 0.06 2.25 5.68 86.30 0.49 2.74 16 11 C -0.18 -6.29 9.26 71.98 0.67 -5.62 16 12 C 0.20 10.92 4.54 85.56 0.39 11.31 16 13 C -0.52 -29.45 8.39 25.60 0.21 -29.23 16 14 H 0.06 3.41 7.39 -2.91 -0.02 3.39 16 15 C 0.00 0.04 5.46 84.65 0.46 0.50 16 16 N -0.94 -56.99 13.29 21.45 0.28 -56.71 16 17 Si 0.97 44.65 29.54 68.60 2.03 46.67 16 18 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 19 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 21 C -0.14 -3.83 5.28 30.69 0.16 -3.67 16 22 C 0.07 1.52 6.84 72.01 0.49 2.01 16 23 O -0.39 -9.72 9.94 -148.98 -1.48 -11.20 16 24 H 0.05 0.90 7.82 -2.39 -0.02 0.88 16 25 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.08 1.67 8.14 -2.39 -0.02 1.66 16 30 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.03 1.01 6.05 -2.39 -0.01 1.00 16 32 H 0.05 1.84 7.92 -2.39 -0.02 1.82 16 33 H 0.06 2.39 6.98 -2.39 -0.02 2.37 16 34 H 0.08 2.59 6.31 -2.39 -0.02 2.58 16 35 H 0.06 1.87 6.33 -2.38 -0.02 1.86 16 36 H 0.03 1.27 6.29 -2.39 -0.01 1.26 16 37 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 38 H -0.02 -1.26 6.02 -2.39 -0.01 -1.27 16 39 H -0.01 -0.56 7.91 -2.38 -0.02 -0.57 16 40 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 41 H 0.07 2.25 7.87 -2.39 -0.02 2.23 16 42 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -63.58 333.97 2.26 -61.31 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 0.93 Total: 12.49 kcal Atomic # 6 Polarization: -30.35 SS G_CDS: 4.31 Total: -26.04 kcal Atomic # 7 Polarization: -79.71 SS G_CDS: -3.53 Total: -83.24 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: -1.48 Total: -11.20 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -63.58 2.26 -61.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356926194.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.162 kcal (2) G-P(sol) polarization free energy of solvation -63.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds