Wall clock time and date at job start Mon Mar 30 2020 07:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46666 * 2 1 4 4 H 1.09002 * 109.48249 * 304.99820 * 3 2 1 5 5 C 1.53095 * 109.48552 * 184.96887 * 3 2 1 6 6 C 1.53175 * 109.16546 * 297.61800 * 5 3 2 7 7 H 1.09006 * 109.54057 * 62.88488 * 6 5 3 8 8 C 1.52998 * 109.61724 * 183.10736 * 6 5 3 9 9 N 1.46903 * 109.47066 * 184.59931 * 8 6 5 10 10 C 1.46901 * 110.99846 * 66.04913 * 9 8 6 11 11 C 1.46900 * 110.99988 * 190.00269 * 9 8 6 12 12 H 1.08993 * 109.47380 * 55.00197 * 11 9 8 13 13 C 1.53007 * 109.47097 * 295.00092 * 11 9 8 14 14 C 1.50703 * 109.46956 * 175.00675 * 11 9 8 15 15 H 1.08002 * 119.99819 * 359.97438 * 14 11 9 16 16 C 1.37875 * 119.99812 * 180.02562 * 14 11 9 17 17 N 1.31512 * 120.00104 * 359.97438 * 16 14 11 18 18 Si 1.86802 * 119.99847 * 179.97438 * 16 14 11 19 19 H 1.48497 * 109.47111 * 59.99904 * 18 16 14 20 20 H 1.48502 * 109.47050 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47279 * 299.99814 * 18 16 14 22 22 C 1.53174 * 109.03843 * 303.02208 * 6 5 3 23 23 C 1.53099 * 109.16328 * 56.98005 * 22 6 5 24 24 O 1.42902 * 109.41129 * 302.38843 * 23 22 6 25 25 H 1.09001 * 109.47256 * 60.00228 * 1 2 3 26 26 H 1.08998 * 109.47132 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47314 * 299.99988 * 1 2 3 28 28 H 1.08991 * 109.46810 * 239.99868 * 2 1 3 29 29 H 1.09001 * 109.46791 * 120.00032 * 2 1 3 30 30 H 1.08996 * 109.52520 * 57.52799 * 5 3 2 31 31 H 1.09009 * 109.51853 * 177.71402 * 5 3 2 32 32 H 1.08999 * 109.47591 * 304.60173 * 8 6 5 33 33 H 1.08998 * 109.46911 * 64.60756 * 8 6 5 34 34 H 1.09011 * 109.46964 * 59.99768 * 10 9 8 35 35 H 1.08997 * 109.47422 * 179.97438 * 10 9 8 36 36 H 1.09004 * 109.47500 * 300.00380 * 10 9 8 37 37 H 1.09000 * 109.46842 * 300.00581 * 13 11 9 38 38 H 1.08998 * 109.46702 * 60.00142 * 13 11 9 39 39 H 1.08997 * 109.47346 * 179.97438 * 13 11 9 40 40 H 0.97000 * 120.00098 * 179.97438 * 17 16 14 41 41 H 1.08997 * 109.52169 * 297.07463 * 22 6 5 42 42 H 1.09004 * 109.57598 * 176.91392 * 22 6 5 43 43 H 1.09004 * 109.48051 * 182.41478 * 23 22 6 44 44 H 1.08992 * 109.48973 * 62.37893 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9817 -0.8418 5 6 3.5657 1.4448 -0.1250 6 6 4.1710 0.7381 1.0917 7 1 3.8501 -0.3035 1.1054 8 6 5.6978 0.8024 1.0161 9 7 6.2758 0.0303 2.1242 10 6 5.9787 -1.4011 1.9798 11 6 7.7232 0.2598 2.2271 12 1 7.9162 1.3289 2.3144 13 6 8.4158 -0.2829 0.9753 14 6 8.2588 -0.4486 3.4446 15 1 7.5908 -1.0125 4.0787 16 6 9.6015 -0.3759 3.7494 17 7 10.4148 0.3112 2.9774 18 14 10.2653 -1.2535 5.2589 19 1 10.0027 -2.7102 5.1401 20 1 11.7285 -1.0216 5.3628 21 1 9.5927 -0.7267 6.4735 22 6 3.6912 1.4389 2.3665 23 6 2.1604 1.4367 2.3953 24 8 1.6624 2.0815 1.2213 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.8576 0.9191 -1.0341 31 1 3.9263 2.4728 -0.1659 32 1 6.0327 0.3828 0.0675 33 1 6.0218 1.8405 1.0889 34 1 6.3987 -1.7666 1.0426 35 1 6.4185 -1.9493 2.8129 36 1 4.8988 -1.5495 1.9763 37 1 8.2226 -1.3521 0.8880 38 1 8.0283 0.2294 0.0948 39 1 9.4896 -0.1123 1.0514 40 1 11.3594 0.3626 3.1921 41 1 4.0542 2.4666 2.3759 42 1 4.0726 0.9097 3.2398 43 1 1.8128 1.9718 3.2790 44 1 1.7988 0.4090 2.4268 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356989356.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:24 Heat of formation + Delta-G solvation = -60.034876 kcal Electronic energy + Delta-G solvation = -20361.468828 eV Core-core repulsion = 17506.221076 eV Total energy + Delta-G solvation = -2855.247752 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.90625 -37.29076 -34.05360 -33.42651 -32.23106 -30.10341 -28.73662 -27.09982 -25.16123 -24.75350 -23.39129 -22.98215 -21.24487 -19.10108 -18.88187 -16.52432 -16.10571 -15.76287 -15.19077 -14.94143 -14.51372 -14.39519 -13.65285 -13.55169 -13.30844 -13.20035 -12.68883 -12.44353 -12.17979 -11.95661 -11.64793 -11.50660 -11.23431 -11.09318 -11.03662 -10.87873 -10.74886 -10.73350 -10.63433 -10.40133 -10.17725 -10.00014 -9.76877 -9.72582 -9.17632 -8.83966 -8.37379 -7.09661 -5.99632 -4.03380 3.32807 3.37201 3.39969 3.95612 4.41684 4.69823 4.83092 4.94976 4.99425 5.10924 5.24543 5.32170 5.40015 5.43699 5.46610 5.59607 5.67031 5.73111 5.83632 5.87810 6.00819 6.02404 6.09965 6.20223 6.21409 6.23819 6.30808 6.36987 6.49949 6.62697 6.69009 6.72857 6.84541 6.92846 7.15406 7.35419 7.52418 7.73567 7.84880 8.15247 8.41209 8.63286 9.02431 9.61585 11.07505 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.038651 B = 0.004557 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.256994 B = 6143.155219 C = 6293.608266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.159 4.159 3 C 0.093 3.907 4 H 0.095 0.905 5 C -0.145 4.145 6 C -0.084 4.084 7 H 0.070 0.930 8 C 0.061 3.939 9 N -0.532 5.532 10 C 0.034 3.966 11 C 0.211 3.789 12 H 0.038 0.962 13 C -0.171 4.171 14 C -0.499 4.499 15 H 0.061 0.939 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.896 3.104 19 H -0.279 1.279 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.138 4.138 23 C 0.055 3.945 24 O -0.379 6.379 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.024 0.976 33 H 0.064 0.936 34 H 0.014 0.986 35 H 0.073 0.927 36 H 0.041 0.959 37 H 0.029 0.971 38 H 0.006 0.994 39 H 0.087 0.913 40 H 0.260 0.740 41 H 0.065 0.935 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.700 0.239 -5.868 16.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.196 4.196 3 C 0.035 3.965 4 H 0.113 0.887 5 C -0.183 4.183 6 C -0.103 4.103 7 H 0.088 0.912 8 C -0.068 4.068 9 N -0.255 5.255 10 C -0.115 4.115 11 C 0.104 3.896 12 H 0.056 0.944 13 C -0.230 4.230 14 C -0.538 4.538 15 H 0.080 0.920 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.724 3.276 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.202 1.202 22 C -0.176 4.176 23 C -0.021 4.021 24 O -0.298 6.298 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.042 0.958 33 H 0.082 0.918 34 H 0.032 0.968 35 H 0.091 0.909 36 H 0.059 0.941 37 H 0.048 0.952 38 H 0.025 0.975 39 H 0.105 0.895 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -15.821 0.623 -5.424 16.737 hybrid contribution 1.156 -1.031 -0.071 1.551 sum -14.665 -0.408 -5.495 15.666 Atomic orbital electron populations 1.21699 0.95486 1.01172 1.02092 1.22195 0.96605 0.97789 1.03048 1.22160 0.93967 0.92844 0.87498 0.88679 1.22234 0.95381 1.01803 0.98919 1.21227 0.95843 0.99249 0.93957 0.91183 1.22043 0.92675 0.98814 0.93238 1.62311 1.16371 1.06560 1.40295 1.22249 0.98264 0.90631 1.00341 1.19292 0.80104 0.96866 0.93301 0.94447 1.22392 1.05298 0.98308 0.97034 1.21086 0.92721 1.31207 1.08783 0.92038 1.24926 0.96973 0.95608 0.96778 1.69877 1.04245 1.41453 1.37874 0.86597 0.77635 0.79981 0.83385 1.20423 1.21423 1.20240 1.22084 0.94448 1.01686 0.99369 1.22662 0.94404 0.97402 0.87651 1.87932 1.74759 1.53369 1.13769 0.92961 0.93088 0.92257 0.91237 0.90925 0.91408 0.91154 0.95829 0.91781 0.96787 0.90879 0.94066 0.95225 0.97489 0.89468 0.92994 0.91610 0.89447 0.89434 0.93311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.81 37.16 0.36 -1.00 16 2 C -0.16 -1.64 4.74 -26.73 -0.13 -1.77 16 3 C 0.09 1.07 3.29 -26.68 -0.09 0.98 16 4 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 5 C -0.15 -1.81 4.93 -26.59 -0.13 -1.94 16 6 C -0.08 -1.22 1.88 -90.44 -0.17 -1.39 16 7 H 0.07 1.02 4.94 -51.93 -0.26 0.76 16 8 C 0.06 1.09 3.80 -3.82 -0.01 1.08 16 9 N -0.53 -11.15 4.26 -236.27 -1.01 -12.16 16 10 C 0.03 0.65 8.56 60.07 0.51 1.17 16 11 C 0.21 5.27 2.34 -68.86 -0.16 5.11 16 12 H 0.04 1.04 8.03 -51.93 -0.42 0.62 16 13 C -0.17 -4.16 8.28 37.16 0.31 -3.85 16 14 C -0.50 -13.57 7.88 -34.44 -0.27 -13.84 16 15 H 0.06 1.67 6.77 -52.49 -0.36 1.31 16 16 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 17 N -0.90 -25.52 11.32 55.43 0.63 -24.89 16 18 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 C -0.14 -2.00 5.27 -26.59 -0.14 -2.14 16 23 C 0.06 0.69 6.52 37.21 0.24 0.93 16 24 O -0.38 -5.01 10.13 -35.23 -0.36 -5.37 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.59 7.82 -51.93 -0.41 0.18 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.81 4.98 -51.93 -0.26 0.56 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 32 H 0.02 0.43 6.94 -51.93 -0.36 0.07 16 33 H 0.06 1.20 8.00 -51.93 -0.42 0.78 16 34 H 0.01 0.27 6.51 -51.92 -0.34 -0.07 16 35 H 0.07 1.53 6.41 -51.93 -0.33 1.20 16 36 H 0.04 0.69 6.38 -51.93 -0.33 0.35 16 37 H 0.03 0.70 6.47 -51.93 -0.34 0.36 16 38 H 0.01 0.14 6.75 -51.93 -0.35 -0.21 16 39 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 40 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 42 H 0.09 1.40 7.85 -51.93 -0.41 0.99 16 43 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.05 0.58 6.23 -51.93 -0.32 0.25 16 LS Contribution 322.78 15.07 4.86 4.86 Total: -1.00 -27.95 322.78 -8.38 -36.33 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -7.72 Total: 0.10 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: 0.23 Total: -15.16 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: -0.38 Total: -37.06 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: -0.36 Total: -5.37 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -27.95 -8.38 -36.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356989356.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.705 kcal (2) G-P(sol) polarization free energy of solvation -27.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds