Wall clock time and date at job start Mon Mar 30 2020 07:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46666 * 2 1 4 4 H 1.09002 * 109.48249 * 304.99820 * 3 2 1 5 5 C 1.53095 * 109.48552 * 184.96887 * 3 2 1 6 6 C 1.53175 * 109.16546 * 297.61800 * 5 3 2 7 7 H 1.09006 * 109.54057 * 62.88488 * 6 5 3 8 8 C 1.52998 * 109.61724 * 183.10736 * 6 5 3 9 9 N 1.46903 * 109.47066 * 184.59931 * 8 6 5 10 10 C 1.46901 * 110.99846 * 66.04913 * 9 8 6 11 11 C 1.46900 * 110.99988 * 190.00269 * 9 8 6 12 12 H 1.08993 * 109.47380 * 55.00197 * 11 9 8 13 13 C 1.53007 * 109.47097 * 295.00092 * 11 9 8 14 14 C 1.50703 * 109.46956 * 175.00675 * 11 9 8 15 15 H 1.08002 * 119.99819 * 359.97438 * 14 11 9 16 16 C 1.37875 * 119.99812 * 180.02562 * 14 11 9 17 17 N 1.31512 * 120.00104 * 359.97438 * 16 14 11 18 18 Si 1.86802 * 119.99847 * 179.97438 * 16 14 11 19 19 H 1.48497 * 109.47111 * 59.99904 * 18 16 14 20 20 H 1.48502 * 109.47050 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47279 * 299.99814 * 18 16 14 22 22 C 1.53174 * 109.03843 * 303.02208 * 6 5 3 23 23 C 1.53099 * 109.16328 * 56.98005 * 22 6 5 24 24 O 1.42902 * 109.41129 * 302.38843 * 23 22 6 25 25 H 1.09001 * 109.47256 * 60.00228 * 1 2 3 26 26 H 1.08998 * 109.47132 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47314 * 299.99988 * 1 2 3 28 28 H 1.08991 * 109.46810 * 239.99868 * 2 1 3 29 29 H 1.09001 * 109.46791 * 120.00032 * 2 1 3 30 30 H 1.08996 * 109.52520 * 57.52799 * 5 3 2 31 31 H 1.09009 * 109.51853 * 177.71402 * 5 3 2 32 32 H 1.08999 * 109.47591 * 304.60173 * 8 6 5 33 33 H 1.08998 * 109.46911 * 64.60756 * 8 6 5 34 34 H 1.09011 * 109.46964 * 59.99768 * 10 9 8 35 35 H 1.08997 * 109.47422 * 179.97438 * 10 9 8 36 36 H 1.09004 * 109.47500 * 300.00380 * 10 9 8 37 37 H 1.09000 * 109.46842 * 300.00581 * 13 11 9 38 38 H 1.08998 * 109.46702 * 60.00142 * 13 11 9 39 39 H 1.08997 * 109.47346 * 179.97438 * 13 11 9 40 40 H 0.97000 * 120.00098 * 179.97438 * 17 16 14 41 41 H 1.08997 * 109.52169 * 297.07463 * 22 6 5 42 42 H 1.09004 * 109.57598 * 176.91392 * 22 6 5 43 43 H 1.09004 * 109.48051 * 182.41478 * 23 22 6 44 44 H 1.08992 * 109.48973 * 62.37893 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9817 -0.8418 5 6 3.5657 1.4448 -0.1250 6 6 4.1710 0.7381 1.0917 7 1 3.8501 -0.3035 1.1054 8 6 5.6978 0.8024 1.0161 9 7 6.2758 0.0303 2.1242 10 6 5.9787 -1.4011 1.9798 11 6 7.7232 0.2598 2.2271 12 1 7.9162 1.3289 2.3144 13 6 8.4158 -0.2829 0.9753 14 6 8.2588 -0.4486 3.4446 15 1 7.5908 -1.0125 4.0787 16 6 9.6015 -0.3759 3.7494 17 7 10.4148 0.3112 2.9774 18 14 10.2653 -1.2535 5.2589 19 1 10.0027 -2.7102 5.1401 20 1 11.7285 -1.0216 5.3628 21 1 9.5927 -0.7267 6.4735 22 6 3.6912 1.4389 2.3665 23 6 2.1604 1.4367 2.3953 24 8 1.6624 2.0815 1.2213 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.8576 0.9191 -1.0341 31 1 3.9263 2.4728 -0.1659 32 1 6.0327 0.3828 0.0675 33 1 6.0218 1.8405 1.0889 34 1 6.3987 -1.7666 1.0426 35 1 6.4185 -1.9493 2.8129 36 1 4.8988 -1.5495 1.9763 37 1 8.2226 -1.3521 0.8880 38 1 8.0283 0.2294 0.0948 39 1 9.4896 -0.1123 1.0514 40 1 11.3594 0.3626 3.1921 41 1 4.0542 2.4666 2.3759 42 1 4.0726 0.9097 3.2398 43 1 1.8128 1.9718 3.2790 44 1 1.7988 0.4090 2.4268 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356989356.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:24 Heat of formation + Delta-G solvation = -76.274277 kcal Electronic energy + Delta-G solvation = -20362.173022 eV Core-core repulsion = 17506.221076 eV Total energy + Delta-G solvation = -2855.951946 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.97010 -38.91800 -35.56867 -34.34005 -33.98210 -31.05880 -30.57987 -28.53609 -27.20676 -26.17663 -24.42201 -24.11841 -22.56763 -20.82845 -19.95388 -18.23124 -17.51448 -16.84559 -16.76957 -16.27270 -16.08590 -15.53039 -15.28350 -14.70386 -14.67119 -14.42593 -14.09528 -13.70924 -13.51324 -13.34334 -13.00711 -12.89424 -12.72672 -12.61614 -12.50363 -12.45290 -12.35538 -12.03361 -11.99112 -11.88877 -11.74127 -11.46958 -11.29433 -10.90135 -10.78763 -10.48806 -10.21124 -8.80539 -8.10046 -6.20952 1.43142 1.44623 1.52094 2.43339 3.01967 3.19240 3.38384 3.80117 3.84533 4.01632 4.10475 4.19403 4.33554 4.44944 4.49081 4.50835 4.63099 4.64783 4.67887 4.76980 4.82616 4.85787 4.89895 4.93793 4.96235 5.00750 5.06098 5.13728 5.17764 5.19492 5.23624 5.35204 5.44167 5.45505 5.54864 5.56079 5.71676 5.79969 6.20781 6.39458 6.50419 6.77775 6.93265 7.48434 8.96125 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.038651 B = 0.004557 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.256994 B = 6143.155219 C = 6293.608266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.156 4.156 3 C 0.092 3.908 4 H 0.111 0.889 5 C -0.141 4.141 6 C -0.074 4.074 7 H 0.077 0.923 8 C 0.064 3.936 9 N -0.538 5.538 10 C 0.039 3.961 11 C 0.214 3.786 12 H 0.001 0.999 13 C -0.156 4.156 14 C -0.514 4.514 15 H 0.058 0.942 16 C 0.010 3.990 17 N -0.923 5.923 18 Si 0.959 3.041 19 H -0.271 1.271 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.135 4.135 23 C 0.061 3.939 24 O -0.391 6.391 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.023 0.977 33 H 0.048 0.952 34 H 0.013 0.987 35 H 0.054 0.946 36 H 0.072 0.928 37 H 0.031 0.969 38 H 0.022 0.978 39 H 0.059 0.941 40 H 0.260 0.740 41 H 0.050 0.950 42 H 0.070 0.930 43 H 0.098 0.902 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.383 -0.722 -6.195 18.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.194 4.194 3 C 0.035 3.965 4 H 0.129 0.871 5 C -0.179 4.179 6 C -0.093 4.093 7 H 0.095 0.905 8 C -0.064 4.064 9 N -0.261 5.261 10 C -0.109 4.109 11 C 0.107 3.893 12 H 0.019 0.981 13 C -0.216 4.216 14 C -0.552 4.552 15 H 0.077 0.923 16 C -0.188 4.188 17 N -0.563 5.563 18 Si 0.785 3.215 19 H -0.196 1.196 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.173 4.173 23 C -0.015 4.015 24 O -0.310 6.310 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.041 0.959 33 H 0.067 0.933 34 H 0.031 0.969 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.050 0.950 38 H 0.041 0.959 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.116 0.884 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.527 -0.341 -5.756 18.451 hybrid contribution 1.658 -0.693 -0.007 1.797 sum -15.869 -1.034 -5.764 16.915 Atomic orbital electron populations 1.21676 0.94642 1.01797 1.02081 1.22172 0.97322 0.96733 1.03145 1.22295 0.92989 0.93920 0.87342 0.87139 1.22210 0.96269 1.01173 0.98273 1.21140 0.93074 0.99981 0.95114 0.90489 1.22081 0.95004 0.97335 0.92014 1.62204 1.13802 1.08005 1.42128 1.22221 1.00115 0.89115 0.99438 1.19047 0.82777 0.94368 0.93110 0.98122 1.22184 1.03384 0.98514 0.97483 1.21365 0.93039 1.31265 1.09532 0.92336 1.25703 0.97294 0.96301 0.99517 1.70014 1.04384 1.42519 1.39357 0.85600 0.76904 0.79115 0.79927 1.19573 1.21159 1.19820 1.22020 0.96204 1.00458 0.98626 1.22628 0.92542 0.98285 0.88062 1.87927 1.74724 1.54010 1.14353 0.92138 0.92179 0.93117 0.90166 0.91756 0.90110 0.91943 0.95868 0.93339 0.96860 0.92674 0.90914 0.94957 0.95878 0.92201 0.93051 0.93081 0.91169 0.88409 0.92197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.81 71.98 0.71 -1.57 16 2 C -0.16 -2.77 4.74 30.59 0.15 -2.62 16 3 C 0.09 1.88 3.29 30.63 0.10 1.98 16 4 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 5 C -0.14 -3.25 4.93 30.68 0.15 -3.10 16 6 C -0.07 -2.05 1.88 -10.68 -0.02 -2.07 16 7 H 0.08 2.05 4.94 -2.38 -0.01 2.03 16 8 C 0.06 2.27 3.80 86.30 0.33 2.60 16 9 N -0.54 -22.58 4.26 -901.44 -3.84 -26.43 16 10 C 0.04 1.48 8.56 127.69 1.09 2.57 16 11 C 0.21 10.96 2.34 44.17 0.10 11.07 16 12 H 0.00 0.05 8.03 -2.39 -0.02 0.03 16 13 C -0.16 -7.68 8.28 71.98 0.60 -7.09 16 14 C -0.51 -28.26 7.88 25.60 0.20 -28.06 16 15 H 0.06 3.19 6.77 -2.91 -0.02 3.17 16 16 C 0.01 0.56 5.30 84.65 0.45 1.01 16 17 N -0.92 -53.56 11.32 21.45 0.24 -53.31 16 18 Si 0.96 43.81 29.54 68.60 2.03 45.84 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 20 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 21 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 22 C -0.14 -3.81 5.27 30.69 0.16 -3.65 16 23 C 0.06 1.42 6.52 72.02 0.47 1.89 16 24 O -0.39 -9.53 10.13 -148.98 -1.51 -11.03 16 25 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.05 0.89 7.82 -2.39 -0.02 0.87 16 28 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.06 1.25 4.98 -2.39 -0.01 1.24 16 30 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 32 H 0.02 0.83 6.94 -2.39 -0.02 0.81 16 33 H 0.05 1.85 8.00 -2.39 -0.02 1.83 16 34 H 0.01 0.49 6.51 -2.38 -0.02 0.48 16 35 H 0.05 2.27 6.41 -2.39 -0.02 2.25 16 36 H 0.07 2.26 6.38 -2.38 -0.02 2.25 16 37 H 0.03 1.52 6.47 -2.39 -0.02 1.50 16 38 H 0.02 1.01 6.75 -2.39 -0.02 0.99 16 39 H 0.06 3.28 6.07 -2.39 -0.01 3.27 16 40 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 41 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.07 2.22 7.85 -2.39 -0.02 2.20 16 43 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.06 1.27 6.23 -2.39 -0.01 1.26 16 Total: -1.00 -59.81 322.78 2.35 -57.46 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: 0.95 Total: 14.53 kcal Atomic # 6 Polarization: -31.53 SS G_CDS: 4.49 Total: -27.05 kcal Atomic # 7 Polarization: -76.14 SS G_CDS: -3.60 Total: -79.74 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: -1.51 Total: -11.03 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -59.81 2.35 -57.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356989356.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.815 kcal (2) G-P(sol) polarization free energy of solvation -59.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds