Wall clock time and date at job start Mon Mar 30 2020 07:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46944 * 2 1 4 4 H 1.09000 * 109.47792 * 304.97981 * 3 2 1 5 5 C 1.53090 * 109.47951 * 184.94420 * 3 2 1 6 6 C 1.53175 * 109.16014 * 182.40812 * 5 3 2 7 7 H 1.09005 * 109.62160 * 297.06661 * 6 5 3 8 8 C 1.53001 * 109.54501 * 176.84604 * 6 5 3 9 9 N 1.46897 * 109.47528 * 175.44453 * 8 6 5 10 10 C 1.46906 * 110.99814 * 293.95568 * 9 8 6 11 11 C 1.46905 * 111.00158 * 170.00206 * 9 8 6 12 12 H 1.09005 * 109.47094 * 59.99781 * 11 9 8 13 13 C 1.52996 * 109.46729 * 300.00036 * 11 9 8 14 14 C 1.50702 * 109.46952 * 179.97438 * 11 9 8 15 15 H 1.07993 * 120.00171 * 359.97438 * 14 11 9 16 16 C 1.37879 * 119.99453 * 179.97438 * 14 11 9 17 17 N 1.31514 * 120.00197 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 119.99608 * 180.02562 * 16 14 11 19 19 H 1.48499 * 109.47035 * 90.00049 * 18 16 14 20 20 H 1.48502 * 109.47119 * 209.99946 * 18 16 14 21 21 H 1.48501 * 109.47286 * 329.99965 * 18 16 14 22 22 C 1.53182 * 109.03840 * 56.98239 * 6 5 3 23 23 C 1.53092 * 109.15942 * 303.01663 * 22 6 5 24 24 O 1.42900 * 109.41405 * 57.61122 * 23 22 6 25 25 H 1.09000 * 109.46933 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47144 * 299.99531 * 1 2 3 27 27 H 1.09000 * 109.47215 * 59.99931 * 1 2 3 28 28 H 1.09004 * 109.47144 * 240.00469 * 2 1 3 29 29 H 1.09000 * 109.47215 * 120.00068 * 2 1 3 30 30 H 1.08999 * 109.52272 * 62.50807 * 5 3 2 31 31 H 1.08999 * 109.52327 * 302.31038 * 5 3 2 32 32 H 1.09009 * 109.46667 * 55.44270 * 8 6 5 33 33 H 1.09002 * 109.47365 * 295.44767 * 8 6 5 34 34 H 1.08992 * 109.47459 * 59.99744 * 10 9 8 35 35 H 1.09004 * 109.47040 * 179.97438 * 10 9 8 36 36 H 1.09000 * 109.47033 * 299.99847 * 10 9 8 37 37 H 1.09000 * 109.47498 * 60.00202 * 13 11 9 38 38 H 1.09007 * 109.46550 * 180.02562 * 13 11 9 39 39 H 1.08992 * 109.47310 * 299.99550 * 13 11 9 40 40 H 0.97005 * 119.99420 * 180.02562 * 17 16 14 41 41 H 1.08994 * 109.52404 * 62.92405 * 22 6 5 42 42 H 1.08997 * 109.52183 * 183.11262 * 22 6 5 43 43 H 1.08998 * 109.47619 * 177.59039 * 23 22 6 44 44 H 1.09006 * 109.48378 * 297.61585 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6057 1.9816 -0.8420 5 6 3.5658 1.4446 -0.1244 6 6 4.0733 2.8886 -0.0631 7 1 3.6812 3.4506 -0.9108 8 6 5.6026 2.8960 -0.1076 9 7 6.0844 4.2828 -0.1588 10 6 5.6949 4.9291 -1.4192 11 6 7.5393 4.3422 0.0357 12 1 8.0345 3.7709 -0.7495 13 6 7.8959 3.7490 1.4002 14 6 7.9957 5.7772 -0.0236 15 1 7.2771 6.5660 -0.1897 16 6 9.3309 6.0829 0.1341 17 7 10.2061 5.1222 0.3358 18 14 9.8967 7.8617 0.0612 19 1 9.8565 8.4501 1.4240 20 1 11.2854 7.9184 -0.4617 21 1 8.9979 8.6306 -0.8367 22 6 3.5956 3.5311 1.2428 23 6 2.0686 3.4484 1.3144 24 8 1.6620 2.0816 1.2210 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8900 30 1 3.8543 0.9972 -1.0755 31 1 3.9989 0.8713 0.6953 32 1 5.9429 2.3601 -0.9939 33 1 5.9945 2.4079 0.7848 34 1 4.6084 4.9332 -1.5049 35 1 6.0638 5.9548 -1.4307 36 1 6.1233 4.3792 -2.2571 37 1 7.5658 2.7111 1.4427 38 1 8.9754 3.7936 1.5447 39 1 7.4008 4.3202 2.1853 40 1 11.1454 5.3374 0.4472 41 1 4.0293 2.9999 2.0900 42 1 3.9055 4.5757 1.2694 43 1 1.7260 3.8657 2.2612 44 1 1.6348 4.0140 0.4896 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356989359.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:27 Heat of formation + Delta-G solvation = -63.042734 kcal Electronic energy + Delta-G solvation = -20103.290184 eV Core-core repulsion = 17247.912001 eV Total energy + Delta-G solvation = -2855.378183 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.57903 -37.13377 -34.09639 -33.89491 -32.27150 -29.73829 -29.14929 -27.43273 -25.14203 -24.17914 -23.46423 -22.47773 -20.90941 -19.80370 -19.06752 -16.36436 -16.30053 -15.81479 -15.24873 -14.62358 -14.48665 -14.28884 -13.77435 -13.69202 -13.39740 -13.05594 -12.99270 -12.34423 -12.10000 -11.77501 -11.64137 -11.55160 -11.26038 -11.10100 -11.06439 -10.94932 -10.88502 -10.69522 -10.33941 -10.25534 -10.05475 -10.01878 -9.94478 -9.74924 -9.21363 -8.82600 -8.41085 -7.13103 -6.00612 -4.05047 3.30660 3.37015 3.39881 3.85843 4.39907 4.60428 4.90789 5.03571 5.06432 5.09772 5.21256 5.29982 5.31601 5.40935 5.51262 5.55502 5.66913 5.78503 5.83375 5.89022 5.96185 6.05901 6.10269 6.12949 6.20866 6.22752 6.30002 6.36726 6.48838 6.61327 6.69864 6.80694 6.89132 7.07225 7.18256 7.36480 7.54398 7.75281 7.83660 8.23072 8.34396 8.62886 9.01740 9.59955 11.06232 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.046014 B = 0.004213 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.360395 B = 6643.783690 C = 6785.557086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C 0.093 3.907 4 H 0.053 0.947 5 C -0.145 4.145 6 C -0.084 4.084 7 H 0.067 0.933 8 C 0.057 3.943 9 N -0.534 5.534 10 C 0.036 3.964 11 C 0.212 3.788 12 H -0.004 1.004 13 C -0.132 4.132 14 C -0.503 4.503 15 H 0.063 0.937 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.896 3.104 19 H -0.281 1.281 20 H -0.288 1.288 21 H -0.275 1.275 22 C -0.138 4.138 23 C 0.061 3.939 24 O -0.383 6.383 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.018 0.982 33 H 0.074 0.926 34 H 0.042 0.958 35 H 0.076 0.924 36 H 0.008 0.992 37 H 0.008 0.992 38 H 0.084 0.916 39 H 0.034 0.966 40 H 0.260 0.740 41 H 0.066 0.934 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.433 -7.401 -0.994 17.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C 0.035 3.965 4 H 0.071 0.929 5 C -0.183 4.183 6 C -0.103 4.103 7 H 0.085 0.915 8 C -0.072 4.072 9 N -0.259 5.259 10 C -0.113 4.113 11 C 0.106 3.894 12 H 0.013 0.987 13 C -0.190 4.190 14 C -0.541 4.541 15 H 0.081 0.919 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.724 3.276 19 H -0.207 1.207 20 H -0.214 1.214 21 H -0.200 1.200 22 C -0.176 4.176 23 C -0.016 4.016 24 O -0.302 6.302 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.036 0.964 33 H 0.092 0.908 34 H 0.061 0.939 35 H 0.094 0.906 36 H 0.026 0.974 37 H 0.027 0.973 38 H 0.102 0.898 39 H 0.053 0.947 40 H 0.070 0.930 41 H 0.085 0.915 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -15.537 -7.256 -0.439 17.153 hybrid contribution 1.066 0.649 -0.939 1.562 sum -14.470 -6.606 -1.378 15.967 Atomic orbital electron populations 1.21716 0.95521 1.01213 1.02175 1.21552 0.96424 0.94825 1.02590 1.22084 0.93786 0.93517 0.87116 0.92902 1.22257 0.95654 0.97933 1.02473 1.21210 0.96377 0.94548 0.98123 0.91497 1.22140 0.93061 0.91730 1.00225 1.62101 1.17332 1.13465 1.32980 1.22245 0.97996 1.00873 0.90185 1.19226 0.80432 0.96424 0.93331 0.98662 1.21842 1.03659 0.95167 0.98338 1.21166 0.92401 0.92009 1.48555 0.91874 1.24940 0.96736 0.97288 0.95333 1.69899 1.02219 1.31458 1.49736 0.86528 0.77783 0.84998 0.78255 1.20673 1.21375 1.19967 1.22086 0.94482 1.03247 0.97755 1.22630 0.95123 0.82442 1.01376 1.87866 1.78685 1.25140 1.38505 0.93025 0.91969 0.93098 0.90863 0.91173 0.91432 0.91111 0.96382 0.90801 0.93891 0.90572 0.97377 0.97347 0.89754 0.94721 0.93023 0.91543 0.89406 0.89299 0.93777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.81 37.16 0.36 -0.99 16 2 C -0.12 -1.16 5.64 -26.73 -0.15 -1.31 16 3 C 0.09 1.10 2.64 -26.68 -0.07 1.03 16 4 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 5 C -0.14 -1.85 4.71 -26.59 -0.13 -1.98 16 6 C -0.08 -1.24 2.19 -90.43 -0.20 -1.44 16 7 H 0.07 1.00 6.35 -51.93 -0.33 0.67 16 8 C 0.06 1.04 4.17 -3.83 -0.02 1.02 16 9 N -0.53 -11.36 4.15 -236.27 -0.98 -12.34 16 10 C 0.04 0.70 9.05 60.07 0.54 1.24 16 11 C 0.21 5.37 2.06 -68.86 -0.14 5.23 16 12 H 0.00 -0.12 8.14 -51.93 -0.42 -0.54 16 13 C -0.13 -3.25 8.77 37.16 0.33 -2.92 16 14 C -0.50 -13.74 7.88 -34.44 -0.27 -14.01 16 15 H 0.06 1.71 6.40 -52.49 -0.34 1.38 16 16 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 17 N -0.89 -25.59 11.32 55.43 0.63 -24.96 16 18 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 C -0.14 -2.02 5.27 -26.59 -0.14 -2.16 16 23 C 0.06 0.77 6.84 37.21 0.25 1.02 16 24 O -0.38 -5.13 9.94 -35.23 -0.35 -5.48 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.62 7.82 -51.93 -0.41 0.22 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.02 0.34 8.12 -51.92 -0.42 -0.09 16 33 H 0.07 1.40 5.83 -51.93 -0.30 1.10 16 34 H 0.04 0.72 6.38 -51.93 -0.33 0.39 16 35 H 0.08 1.61 6.10 -51.93 -0.32 1.29 16 36 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 37 H 0.01 0.17 6.20 -51.93 -0.32 -0.15 16 38 H 0.08 2.27 6.07 -51.92 -0.32 1.96 16 39 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.09 1.41 7.85 -51.93 -0.41 1.01 16 43 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 331.88 15.07 5.00 5.00 Total: -1.00 -28.34 331.88 -8.56 -36.90 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -8.12 Total: -1.67 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: 0.28 Total: -13.76 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: -0.35 Total: -37.30 kcal Atomic # 8 Polarization: -5.13 SS G_CDS: -0.35 Total: -5.48 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.34 -8.56 -36.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356989359.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.139 kcal (2) G-P(sol) polarization free energy of solvation -28.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds