Wall clock time and date at job start Mon Mar 30 2020 07:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46944 * 2 1 4 4 H 1.09000 * 109.47792 * 304.97981 * 3 2 1 5 5 C 1.53090 * 109.47951 * 184.94420 * 3 2 1 6 6 C 1.53175 * 109.16014 * 182.40812 * 5 3 2 7 7 H 1.09005 * 109.62160 * 297.06661 * 6 5 3 8 8 C 1.53001 * 109.54501 * 176.84604 * 6 5 3 9 9 N 1.46897 * 109.47528 * 175.44453 * 8 6 5 10 10 C 1.46906 * 110.99814 * 293.95568 * 9 8 6 11 11 C 1.46905 * 111.00158 * 170.00206 * 9 8 6 12 12 H 1.09005 * 109.47094 * 59.99781 * 11 9 8 13 13 C 1.52996 * 109.46729 * 300.00036 * 11 9 8 14 14 C 1.50702 * 109.46952 * 179.97438 * 11 9 8 15 15 H 1.07993 * 120.00171 * 359.97438 * 14 11 9 16 16 C 1.37879 * 119.99453 * 179.97438 * 14 11 9 17 17 N 1.31514 * 120.00197 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 119.99608 * 180.02562 * 16 14 11 19 19 H 1.48499 * 109.47035 * 90.00049 * 18 16 14 20 20 H 1.48502 * 109.47119 * 209.99946 * 18 16 14 21 21 H 1.48501 * 109.47286 * 329.99965 * 18 16 14 22 22 C 1.53182 * 109.03840 * 56.98239 * 6 5 3 23 23 C 1.53092 * 109.15942 * 303.01663 * 22 6 5 24 24 O 1.42900 * 109.41405 * 57.61122 * 23 22 6 25 25 H 1.09000 * 109.46933 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47144 * 299.99531 * 1 2 3 27 27 H 1.09000 * 109.47215 * 59.99931 * 1 2 3 28 28 H 1.09004 * 109.47144 * 240.00469 * 2 1 3 29 29 H 1.09000 * 109.47215 * 120.00068 * 2 1 3 30 30 H 1.08999 * 109.52272 * 62.50807 * 5 3 2 31 31 H 1.08999 * 109.52327 * 302.31038 * 5 3 2 32 32 H 1.09009 * 109.46667 * 55.44270 * 8 6 5 33 33 H 1.09002 * 109.47365 * 295.44767 * 8 6 5 34 34 H 1.08992 * 109.47459 * 59.99744 * 10 9 8 35 35 H 1.09004 * 109.47040 * 179.97438 * 10 9 8 36 36 H 1.09000 * 109.47033 * 299.99847 * 10 9 8 37 37 H 1.09000 * 109.47498 * 60.00202 * 13 11 9 38 38 H 1.09007 * 109.46550 * 180.02562 * 13 11 9 39 39 H 1.08992 * 109.47310 * 299.99550 * 13 11 9 40 40 H 0.97005 * 119.99420 * 180.02562 * 17 16 14 41 41 H 1.08994 * 109.52404 * 62.92405 * 22 6 5 42 42 H 1.08997 * 109.52183 * 183.11262 * 22 6 5 43 43 H 1.08998 * 109.47619 * 177.59039 * 23 22 6 44 44 H 1.09006 * 109.48378 * 297.61585 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6057 1.9816 -0.8420 5 6 3.5658 1.4446 -0.1244 6 6 4.0733 2.8886 -0.0631 7 1 3.6812 3.4506 -0.9108 8 6 5.6026 2.8960 -0.1076 9 7 6.0844 4.2828 -0.1588 10 6 5.6949 4.9291 -1.4192 11 6 7.5393 4.3422 0.0357 12 1 8.0345 3.7709 -0.7495 13 6 7.8959 3.7490 1.4002 14 6 7.9957 5.7772 -0.0236 15 1 7.2771 6.5660 -0.1897 16 6 9.3309 6.0829 0.1341 17 7 10.2061 5.1222 0.3358 18 14 9.8967 7.8617 0.0612 19 1 9.8565 8.4501 1.4240 20 1 11.2854 7.9184 -0.4617 21 1 8.9979 8.6306 -0.8367 22 6 3.5956 3.5311 1.2428 23 6 2.0686 3.4484 1.3144 24 8 1.6620 2.0816 1.2210 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8900 30 1 3.8543 0.9972 -1.0755 31 1 3.9989 0.8713 0.6953 32 1 5.9429 2.3601 -0.9939 33 1 5.9945 2.4079 0.7848 34 1 4.6084 4.9332 -1.5049 35 1 6.0638 5.9548 -1.4307 36 1 6.1233 4.3792 -2.2571 37 1 7.5658 2.7111 1.4427 38 1 8.9754 3.7936 1.5447 39 1 7.4008 4.3202 2.1853 40 1 11.1454 5.3374 0.4472 41 1 4.0293 2.9999 2.0900 42 1 3.9055 4.5757 1.2694 43 1 1.7260 3.8657 2.2612 44 1 1.6348 4.0140 0.4896 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356989359.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:26 Heat of formation + Delta-G solvation = -79.250501 kcal Electronic energy + Delta-G solvation = -20103.993006 eV Core-core repulsion = 17247.912001 eV Total energy + Delta-G solvation = -2856.081004 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.67805 -38.74456 -35.59337 -34.82289 -34.03961 -31.07360 -30.68729 -28.92393 -26.92657 -25.74387 -24.54371 -23.80857 -21.98621 -21.23537 -20.59126 -18.36754 -17.31199 -17.17314 -16.69544 -16.22900 -15.76040 -15.49030 -15.38830 -14.96089 -14.51196 -14.36070 -14.17216 -13.92424 -13.79627 -13.07931 -12.96068 -12.76545 -12.70196 -12.66645 -12.54371 -12.42682 -12.13580 -12.01084 -11.98271 -11.95046 -11.74473 -11.46677 -11.19838 -11.05044 -10.86364 -10.50954 -10.27410 -8.90600 -8.11671 -6.23542 1.42020 1.42912 1.52878 2.41863 2.92739 3.16151 3.31627 3.77039 3.87735 3.99920 4.08191 4.25945 4.32717 4.42863 4.49301 4.50390 4.60339 4.62932 4.70982 4.72650 4.80309 4.88216 4.92555 4.96895 4.98981 5.04824 5.07051 5.09369 5.14938 5.24210 5.25403 5.29319 5.41975 5.48378 5.49209 5.53964 5.72677 5.79431 6.25402 6.39397 6.40722 6.75609 6.91993 7.45828 8.94516 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.046014 B = 0.004213 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.360395 B = 6643.783690 C = 6785.557086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 C 0.091 3.909 4 H 0.061 0.939 5 C -0.140 4.140 6 C -0.076 4.076 7 H 0.072 0.928 8 C 0.059 3.941 9 N -0.537 5.537 10 C 0.040 3.960 11 C 0.216 3.784 12 H -0.042 1.042 13 C -0.119 4.119 14 C -0.518 4.518 15 H 0.062 0.938 16 C 0.009 3.991 17 N -0.922 5.922 18 Si 0.961 3.039 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.267 1.267 22 C -0.134 4.134 23 C 0.065 3.935 24 O -0.394 6.394 25 H 0.064 0.936 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.089 0.911 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.014 0.986 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.003 0.997 37 H 0.027 0.973 38 H 0.058 0.942 39 H 0.031 0.969 40 H 0.261 0.739 41 H 0.053 0.947 42 H 0.071 0.929 43 H 0.101 0.899 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.165 -7.299 -1.422 18.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.153 4.153 3 C 0.034 3.966 4 H 0.079 0.921 5 C -0.178 4.178 6 C -0.094 4.094 7 H 0.090 0.910 8 C -0.069 4.069 9 N -0.261 5.261 10 C -0.109 4.109 11 C 0.109 3.891 12 H -0.025 1.025 13 C -0.177 4.177 14 C -0.556 4.556 15 H 0.080 0.920 16 C -0.189 4.189 17 N -0.562 5.562 18 Si 0.786 3.214 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.191 1.191 22 C -0.172 4.172 23 C -0.011 4.011 24 O -0.313 6.313 25 H 0.083 0.917 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.107 0.893 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.032 0.968 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.021 0.979 37 H 0.046 0.954 38 H 0.077 0.923 39 H 0.050 0.950 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.090 0.910 43 H 0.119 0.881 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.291 -7.161 -0.870 18.736 hybrid contribution 1.592 0.567 -0.820 1.878 sum -15.700 -6.594 -1.690 17.112 Atomic orbital electron populations 1.21691 0.94799 1.02024 1.01852 1.21577 0.97038 0.93553 1.03112 1.22209 0.92843 0.94703 0.86851 0.92105 1.22225 0.96541 0.96170 1.02886 1.21136 0.93539 0.96321 0.98451 0.90968 1.22185 0.95506 0.89738 0.99449 1.62052 1.14531 1.15525 1.33980 1.22232 0.99926 0.99509 0.89209 1.19031 0.82715 0.95079 0.92301 1.02477 1.21649 1.01853 0.96346 0.97893 1.21451 0.92745 0.92913 1.48540 0.92028 1.25741 0.96871 1.01341 0.94959 1.70031 1.02440 1.33408 1.50347 0.85511 0.77303 0.80125 0.78414 1.20167 1.21084 1.19148 1.22018 0.96212 1.01902 0.97076 1.22626 0.93337 0.82540 1.02630 1.87872 1.78643 1.25419 1.39395 0.91709 0.93175 0.92503 0.89282 0.91745 0.90242 0.91799 0.96785 0.91852 0.90562 0.92274 0.97884 0.95396 0.92285 0.95017 0.92989 0.92814 0.90992 0.88056 0.92619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.81 71.98 0.71 -1.60 16 2 C -0.12 -2.01 5.64 30.60 0.17 -1.84 16 3 C 0.09 1.94 2.64 30.63 0.08 2.02 16 4 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 5 C -0.14 -3.31 4.71 30.68 0.14 -3.16 16 6 C -0.08 -2.13 2.19 -10.67 -0.02 -2.15 16 7 H 0.07 1.97 6.35 -2.38 -0.02 1.96 16 8 C 0.06 2.13 4.17 86.30 0.36 2.49 16 9 N -0.54 -22.81 4.15 -901.43 -3.74 -26.55 16 10 C 0.04 1.53 9.05 127.69 1.16 2.69 16 11 C 0.22 11.17 2.06 44.17 0.09 11.26 16 12 H -0.04 -2.46 8.14 -2.38 -0.02 -2.48 16 13 C -0.12 -5.98 8.77 71.98 0.63 -5.35 16 14 C -0.52 -28.67 7.88 25.60 0.20 -28.47 16 15 H 0.06 3.36 6.40 -2.91 -0.02 3.34 16 16 C 0.01 0.51 5.30 84.66 0.45 0.96 16 17 N -0.92 -53.74 11.32 21.45 0.24 -53.50 16 18 Si 0.96 43.85 29.54 68.60 2.03 45.87 16 19 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 20 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 22 C -0.13 -3.76 5.27 30.69 0.16 -3.60 16 23 C 0.07 1.51 6.84 72.01 0.49 2.00 16 24 O -0.39 -9.73 9.94 -148.98 -1.48 -11.21 16 25 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.05 0.91 7.82 -2.39 -0.02 0.89 16 27 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.01 0.51 8.12 -2.38 -0.02 0.50 16 33 H 0.06 2.39 5.83 -2.39 -0.01 2.38 16 34 H 0.08 2.42 6.38 -2.39 -0.02 2.41 16 35 H 0.06 2.48 6.10 -2.38 -0.01 2.47 16 36 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 37 H 0.03 1.24 6.20 -2.39 -0.01 1.22 16 38 H 0.06 3.26 6.07 -2.38 -0.01 3.25 16 39 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.26 14.45 8.31 -92.70 -0.77 13.68 16 41 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.07 2.25 7.85 -2.39 -0.02 2.23 16 43 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 Total: -1.00 -60.69 331.88 2.61 -58.08 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: 0.93 Total: 12.05 kcal Atomic # 6 Polarization: -29.37 SS G_CDS: 4.62 Total: -24.75 kcal Atomic # 7 Polarization: -76.55 SS G_CDS: -3.49 Total: -80.05 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: -1.48 Total: -11.21 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -60.69 2.61 -58.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356989359.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.170 kcal (2) G-P(sol) polarization free energy of solvation -60.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds