Wall clock time and date at job start Mon Mar 30 2020 07:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46666 * 2 1 4 4 H 1.09002 * 109.48249 * 304.99820 * 3 2 1 5 5 C 1.53095 * 109.48552 * 184.96887 * 3 2 1 6 6 C 1.53175 * 109.16546 * 297.61800 * 5 3 2 7 7 H 1.09006 * 109.54057 * 62.88488 * 6 5 3 8 8 C 1.52998 * 109.61724 * 183.10736 * 6 5 3 9 9 N 1.46903 * 109.47066 * 184.59931 * 8 6 5 10 10 C 1.46901 * 110.99846 * 66.04913 * 9 8 6 11 11 C 1.46900 * 110.99988 * 190.00269 * 9 8 6 12 12 H 1.09006 * 109.46692 * 299.99790 * 11 9 8 13 13 C 1.52989 * 109.47106 * 60.00446 * 11 9 8 14 14 C 1.50705 * 109.46853 * 180.02562 * 11 9 8 15 15 H 1.07990 * 119.99989 * 0.02562 * 14 11 9 16 16 C 1.37878 * 119.99686 * 179.97438 * 14 11 9 17 17 N 1.31515 * 120.00046 * 359.97438 * 16 14 11 18 18 Si 1.86799 * 119.99866 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47015 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.47247 * 120.00007 * 18 16 14 21 21 H 1.48502 * 109.46774 * 239.99774 * 18 16 14 22 22 C 1.53174 * 109.03843 * 303.02208 * 6 5 3 23 23 C 1.53099 * 109.16328 * 56.98005 * 22 6 5 24 24 O 1.42902 * 109.41129 * 302.38843 * 23 22 6 25 25 H 1.09001 * 109.47256 * 60.00228 * 1 2 3 26 26 H 1.08998 * 109.47132 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47314 * 299.99988 * 1 2 3 28 28 H 1.08991 * 109.46810 * 239.99868 * 2 1 3 29 29 H 1.09001 * 109.46791 * 120.00032 * 2 1 3 30 30 H 1.08996 * 109.52520 * 57.52799 * 5 3 2 31 31 H 1.09009 * 109.51853 * 177.71402 * 5 3 2 32 32 H 1.08999 * 109.47591 * 304.60173 * 8 6 5 33 33 H 1.08998 * 109.46911 * 64.60756 * 8 6 5 34 34 H 1.09011 * 109.46964 * 59.99768 * 10 9 8 35 35 H 1.08997 * 109.47422 * 179.97438 * 10 9 8 36 36 H 1.09004 * 109.47500 * 300.00380 * 10 9 8 37 37 H 1.08997 * 109.47674 * 60.00175 * 13 11 9 38 38 H 1.09006 * 109.47307 * 180.02562 * 13 11 9 39 39 H 1.09002 * 109.46926 * 299.99760 * 13 11 9 40 40 H 0.96999 * 120.00116 * 180.02562 * 17 16 14 41 41 H 1.08997 * 109.52169 * 297.07463 * 22 6 5 42 42 H 1.09002 * 109.52430 * 176.88423 * 22 6 5 43 43 H 1.09004 * 109.48051 * 182.41478 * 23 22 6 44 44 H 1.08992 * 109.48973 * 62.37893 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9817 -0.8418 5 6 3.5657 1.4448 -0.1250 6 6 4.1710 0.7381 1.0917 7 1 3.8501 -0.3035 1.1054 8 6 5.6978 0.8024 1.0161 9 7 6.2758 0.0303 2.1242 10 6 5.9787 -1.4011 1.9798 11 6 7.7232 0.2598 2.2271 12 1 8.2063 -0.0456 1.2989 13 6 7.9875 1.7462 2.4746 14 6 8.2796 -0.5473 3.3717 15 1 7.6238 -1.1688 3.9632 16 6 9.6262 -0.4929 3.6630 17 7 10.4250 0.2628 2.9416 18 14 10.3161 -1.4939 5.0812 19 1 9.2187 -2.2564 5.7289 20 1 11.3394 -2.4396 4.5680 21 1 10.9387 -0.5817 6.0740 22 6 3.6912 1.4389 2.3665 23 6 2.1604 1.4367 2.3953 24 8 1.6624 2.0815 1.2213 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.8576 0.9191 -1.0341 31 1 3.9263 2.4728 -0.1659 32 1 6.0327 0.3828 0.0675 33 1 6.0218 1.8405 1.0889 34 1 6.3987 -1.7666 1.0426 35 1 6.4185 -1.9493 2.8129 36 1 4.8988 -1.5495 1.9763 37 1 7.5044 2.0516 3.4027 38 1 9.0615 1.9166 2.5505 39 1 7.5850 2.3296 1.6465 40 1 11.3724 0.3007 3.1463 41 1 4.0542 2.4666 2.3759 42 1 4.0726 0.9088 3.2392 43 1 1.8128 1.9718 3.2790 44 1 1.7988 0.4090 2.4268 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356989361.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:29 Heat of formation + Delta-G solvation = -59.130632 kcal Electronic energy + Delta-G solvation = -20368.451801 eV Core-core repulsion = 17513.243260 eV Total energy + Delta-G solvation = -2855.208541 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.90227 -37.14084 -33.98936 -33.42279 -32.24491 -30.10247 -29.14678 -27.40951 -25.08956 -24.11360 -23.39568 -22.92077 -21.22390 -19.25054 -18.89386 -16.55749 -16.22520 -15.77989 -15.24655 -14.84298 -14.48732 -14.29553 -13.77546 -13.59017 -13.24378 -13.15202 -12.74630 -12.36413 -12.26423 -11.91337 -11.70983 -11.53966 -11.31281 -11.07004 -11.05014 -10.92774 -10.86959 -10.67752 -10.33956 -10.26449 -10.05689 -10.01280 -9.76564 -9.74110 -9.17505 -8.81302 -8.41710 -7.12789 -6.00689 -4.05009 3.29316 3.37272 3.41354 3.95650 4.40538 4.69774 4.82676 4.94930 4.99440 5.10434 5.24445 5.30712 5.39887 5.43250 5.46590 5.59619 5.67080 5.73022 5.83768 5.87875 6.00891 6.02239 6.10578 6.19907 6.20929 6.24139 6.30222 6.36860 6.49357 6.62066 6.71098 6.80642 6.89318 7.07309 7.18377 7.35528 7.54547 7.75431 7.83867 8.23155 8.34436 8.62988 9.02076 9.60072 11.06233 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.039706 B = 0.004562 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.007481 B = 6136.264509 C = 6276.210195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.159 4.159 3 C 0.093 3.907 4 H 0.095 0.905 5 C -0.145 4.145 6 C -0.083 4.083 7 H 0.069 0.931 8 C 0.056 3.944 9 N -0.534 5.534 10 C 0.036 3.964 11 C 0.211 3.789 12 H -0.004 1.004 13 C -0.132 4.132 14 C -0.502 4.502 15 H 0.064 0.936 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.895 3.105 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.284 1.284 22 C -0.138 4.138 23 C 0.055 3.945 24 O -0.379 6.379 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.018 0.982 33 H 0.073 0.927 34 H 0.007 0.993 35 H 0.076 0.924 36 H 0.042 0.958 37 H 0.034 0.966 38 H 0.084 0.916 39 H 0.008 0.992 40 H 0.259 0.741 41 H 0.065 0.935 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.818 0.851 -5.392 16.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.196 4.196 3 C 0.035 3.965 4 H 0.113 0.887 5 C -0.183 4.183 6 C -0.102 4.102 7 H 0.088 0.912 8 C -0.072 4.072 9 N -0.258 5.258 10 C -0.113 4.113 11 C 0.105 3.895 12 H 0.013 0.987 13 C -0.190 4.190 14 C -0.540 4.540 15 H 0.082 0.918 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.724 3.276 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.210 1.210 22 C -0.175 4.175 23 C -0.021 4.021 24 O -0.298 6.298 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.036 0.964 33 H 0.092 0.908 34 H 0.026 0.974 35 H 0.094 0.906 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.102 0.898 39 H 0.026 0.974 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -15.937 1.226 -4.952 16.733 hybrid contribution 1.151 -1.064 -0.086 1.570 sum -14.785 0.162 -5.039 15.621 Atomic orbital electron populations 1.21699 0.95484 1.01171 1.02091 1.22195 0.96604 0.97788 1.03049 1.22159 0.93960 0.92845 0.87497 0.88676 1.22235 0.95387 1.01805 0.98922 1.21216 0.95817 0.99217 0.93965 0.91236 1.22148 0.92771 0.99694 0.92619 1.62099 1.16723 1.06456 1.40564 1.22243 0.98381 0.90472 1.00175 1.19232 0.80626 0.93754 0.95865 0.98666 1.21837 1.03397 0.96427 0.97311 1.21200 0.92637 1.25799 1.14380 0.91832 1.24938 0.97046 0.95678 0.96638 1.69906 1.04404 1.39332 1.39666 0.86482 0.78933 0.79937 0.82295 1.19766 1.21200 1.21037 1.22076 0.94420 1.01674 0.99351 1.22663 0.94407 0.97399 0.87651 1.87931 1.74756 1.53368 1.13767 0.92960 0.93087 0.92258 0.91236 0.90925 0.91410 0.91154 0.96413 0.90835 0.97399 0.90584 0.93921 0.94712 0.89778 0.97354 0.93085 0.91609 0.89479 0.89440 0.93312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.81 37.16 0.36 -1.00 16 2 C -0.16 -1.65 4.74 -26.73 -0.13 -1.77 16 3 C 0.09 1.07 3.29 -26.68 -0.09 0.98 16 4 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 5 C -0.15 -1.82 4.93 -26.59 -0.13 -1.96 16 6 C -0.08 -1.22 1.88 -90.44 -0.17 -1.39 16 7 H 0.07 1.02 4.94 -51.93 -0.26 0.76 16 8 C 0.06 1.02 4.18 -3.82 -0.02 1.00 16 9 N -0.53 -11.30 4.14 -236.28 -0.98 -12.28 16 10 C 0.04 0.70 9.05 60.07 0.54 1.25 16 11 C 0.21 5.34 2.06 -68.87 -0.14 5.20 16 12 H 0.00 -0.12 8.14 -51.93 -0.42 -0.54 16 13 C -0.13 -3.23 8.76 37.15 0.33 -2.91 16 14 C -0.50 -13.68 7.88 -34.44 -0.27 -13.95 16 15 H 0.06 1.73 6.40 -52.49 -0.34 1.39 16 16 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 17 N -0.89 -25.56 11.32 55.43 0.63 -24.93 16 18 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 19 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 C -0.14 -2.00 5.27 -26.59 -0.14 -2.14 16 23 C 0.06 0.69 6.52 37.21 0.24 0.93 16 24 O -0.38 -5.02 10.13 -35.23 -0.36 -5.38 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.59 7.82 -51.93 -0.41 0.19 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.82 4.98 -51.93 -0.26 0.56 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.92 8.14 -51.92 -0.42 0.49 16 32 H 0.02 0.33 8.12 -51.93 -0.42 -0.09 16 33 H 0.07 1.39 5.83 -51.93 -0.30 1.08 16 34 H 0.01 0.15 8.14 -51.92 -0.42 -0.27 16 35 H 0.08 1.60 6.10 -51.93 -0.32 1.28 16 36 H 0.04 0.71 6.38 -51.93 -0.33 0.38 16 37 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 2.26 6.07 -51.93 -0.32 1.95 16 39 H 0.01 0.17 6.20 -51.93 -0.32 -0.15 16 40 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.09 1.40 7.85 -51.93 -0.41 0.99 16 43 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.05 0.58 6.23 -51.93 -0.32 0.25 16 LS Contribution 324.93 15.07 4.90 4.90 Total: -1.00 -28.26 324.93 -8.32 -36.58 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -7.78 Total: -0.92 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: 0.30 Total: -14.24 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: -0.35 Total: -37.20 kcal Atomic # 8 Polarization: -5.02 SS G_CDS: -0.36 Total: -5.38 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.26 -8.32 -36.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356989361.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.550 kcal (2) G-P(sol) polarization free energy of solvation -28.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds