Wall clock time and date at job start Mon Mar 30 2020 07:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46666 * 2 1 4 4 H 1.09002 * 109.48249 * 304.99820 * 3 2 1 5 5 C 1.53095 * 109.48552 * 184.96887 * 3 2 1 6 6 C 1.53175 * 109.16546 * 297.61800 * 5 3 2 7 7 H 1.09006 * 109.54057 * 62.88488 * 6 5 3 8 8 C 1.52998 * 109.61724 * 183.10736 * 6 5 3 9 9 N 1.46903 * 109.47066 * 184.59931 * 8 6 5 10 10 C 1.46901 * 110.99846 * 66.04913 * 9 8 6 11 11 C 1.46900 * 110.99988 * 190.00269 * 9 8 6 12 12 H 1.09006 * 109.46692 * 299.99790 * 11 9 8 13 13 C 1.52989 * 109.47106 * 60.00446 * 11 9 8 14 14 C 1.50705 * 109.46853 * 180.02562 * 11 9 8 15 15 H 1.07990 * 119.99989 * 0.02562 * 14 11 9 16 16 C 1.37878 * 119.99686 * 179.97438 * 14 11 9 17 17 N 1.31515 * 120.00046 * 359.97438 * 16 14 11 18 18 Si 1.86799 * 119.99866 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47015 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.47247 * 120.00007 * 18 16 14 21 21 H 1.48502 * 109.46774 * 239.99774 * 18 16 14 22 22 C 1.53174 * 109.03843 * 303.02208 * 6 5 3 23 23 C 1.53099 * 109.16328 * 56.98005 * 22 6 5 24 24 O 1.42902 * 109.41129 * 302.38843 * 23 22 6 25 25 H 1.09001 * 109.47256 * 60.00228 * 1 2 3 26 26 H 1.08998 * 109.47132 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47314 * 299.99988 * 1 2 3 28 28 H 1.08991 * 109.46810 * 239.99868 * 2 1 3 29 29 H 1.09001 * 109.46791 * 120.00032 * 2 1 3 30 30 H 1.08996 * 109.52520 * 57.52799 * 5 3 2 31 31 H 1.09009 * 109.51853 * 177.71402 * 5 3 2 32 32 H 1.08999 * 109.47591 * 304.60173 * 8 6 5 33 33 H 1.08998 * 109.46911 * 64.60756 * 8 6 5 34 34 H 1.09011 * 109.46964 * 59.99768 * 10 9 8 35 35 H 1.08997 * 109.47422 * 179.97438 * 10 9 8 36 36 H 1.09004 * 109.47500 * 300.00380 * 10 9 8 37 37 H 1.08997 * 109.47674 * 60.00175 * 13 11 9 38 38 H 1.09006 * 109.47307 * 180.02562 * 13 11 9 39 39 H 1.09002 * 109.46926 * 299.99760 * 13 11 9 40 40 H 0.96999 * 120.00116 * 180.02562 * 17 16 14 41 41 H 1.08997 * 109.52169 * 297.07463 * 22 6 5 42 42 H 1.09002 * 109.52430 * 176.88423 * 22 6 5 43 43 H 1.09004 * 109.48051 * 182.41478 * 23 22 6 44 44 H 1.08992 * 109.48973 * 62.37893 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9817 -0.8418 5 6 3.5657 1.4448 -0.1250 6 6 4.1710 0.7381 1.0917 7 1 3.8501 -0.3035 1.1054 8 6 5.6978 0.8024 1.0161 9 7 6.2758 0.0303 2.1242 10 6 5.9787 -1.4011 1.9798 11 6 7.7232 0.2598 2.2271 12 1 8.2063 -0.0456 1.2989 13 6 7.9875 1.7462 2.4746 14 6 8.2796 -0.5473 3.3717 15 1 7.6238 -1.1688 3.9632 16 6 9.6262 -0.4929 3.6630 17 7 10.4250 0.2628 2.9416 18 14 10.3161 -1.4939 5.0812 19 1 9.2187 -2.2564 5.7289 20 1 11.3394 -2.4396 4.5680 21 1 10.9387 -0.5817 6.0740 22 6 3.6912 1.4389 2.3665 23 6 2.1604 1.4367 2.3953 24 8 1.6624 2.0815 1.2213 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.8576 0.9191 -1.0341 31 1 3.9263 2.4728 -0.1659 32 1 6.0327 0.3828 0.0675 33 1 6.0218 1.8405 1.0889 34 1 6.3987 -1.7666 1.0426 35 1 6.4185 -1.9493 2.8129 36 1 4.8988 -1.5495 1.9763 37 1 7.5044 2.0516 3.4027 38 1 9.0615 1.9166 2.5505 39 1 7.5850 2.3296 1.6465 40 1 11.3724 0.3007 3.1463 41 1 4.0542 2.4666 2.3759 42 1 4.0726 0.9088 3.2392 43 1 1.8128 1.9718 3.2790 44 1 1.7988 0.4090 2.4268 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356989361.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:29 Heat of formation + Delta-G solvation = -75.536836 kcal Electronic energy + Delta-G solvation = -20369.163228 eV Core-core repulsion = 17513.243260 eV Total energy + Delta-G solvation = -2855.919968 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.96389 -38.76852 -35.55190 -34.34229 -33.95127 -31.07168 -31.05235 -28.89575 -26.89764 -25.67475 -24.44717 -24.07008 -22.58249 -20.99627 -19.96073 -18.38790 -17.54236 -16.90480 -16.74718 -16.28884 -15.78013 -15.63817 -15.35825 -14.94803 -14.46760 -14.39576 -14.10506 -13.83061 -13.64343 -13.11126 -13.00443 -12.96066 -12.75055 -12.69671 -12.53620 -12.44243 -12.11936 -12.05494 -11.94791 -11.91311 -11.74000 -11.44676 -11.22869 -10.94360 -10.74664 -10.51283 -10.20975 -8.89713 -8.11507 -6.23197 1.40874 1.42823 1.54441 2.42063 3.02033 3.16627 3.35514 3.79706 3.84345 4.00804 4.10454 4.19072 4.32856 4.44506 4.47878 4.50756 4.60165 4.64859 4.71933 4.74892 4.84229 4.90281 4.91986 4.94752 5.00245 5.03638 5.08031 5.08879 5.16896 5.20874 5.27610 5.34743 5.44611 5.44934 5.49820 5.56420 5.73267 5.79859 6.25704 6.39539 6.41286 6.76286 6.92585 7.46228 8.94923 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.039706 B = 0.004562 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.007481 B = 6136.264509 C = 6276.210195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.156 4.156 3 C 0.092 3.908 4 H 0.111 0.889 5 C -0.141 4.141 6 C -0.074 4.074 7 H 0.075 0.925 8 C 0.058 3.942 9 N -0.536 5.536 10 C 0.040 3.960 11 C 0.215 3.785 12 H -0.042 1.042 13 C -0.119 4.119 14 C -0.516 4.516 15 H 0.061 0.939 16 C 0.009 3.991 17 N -0.922 5.922 18 Si 0.960 3.040 19 H -0.266 1.266 20 H -0.282 1.282 21 H -0.281 1.281 22 C -0.134 4.134 23 C 0.061 3.939 24 O -0.390 6.390 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.013 0.987 33 H 0.062 0.938 34 H 0.002 0.998 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.031 0.969 38 H 0.058 0.942 39 H 0.027 0.973 40 H 0.261 0.739 41 H 0.052 0.948 42 H 0.070 0.930 43 H 0.098 0.902 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.566 0.262 -5.437 18.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.194 4.194 3 C 0.035 3.965 4 H 0.129 0.871 5 C -0.180 4.180 6 C -0.093 4.093 7 H 0.093 0.907 8 C -0.070 4.070 9 N -0.261 5.261 10 C -0.108 4.108 11 C 0.108 3.892 12 H -0.025 1.025 13 C -0.177 4.177 14 C -0.555 4.555 15 H 0.079 0.921 16 C -0.189 4.189 17 N -0.562 5.562 18 Si 0.786 3.214 19 H -0.190 1.190 20 H -0.208 1.208 21 H -0.207 1.207 22 C -0.172 4.172 23 C -0.015 4.015 24 O -0.310 6.310 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.032 0.968 33 H 0.081 0.919 34 H 0.021 0.979 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.050 0.950 38 H 0.077 0.923 39 H 0.046 0.954 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.089 0.911 43 H 0.117 0.883 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.708 0.637 -5.003 18.412 hybrid contribution 1.679 -0.863 -0.129 1.892 sum -16.028 -0.226 -5.132 16.831 Atomic orbital electron populations 1.21675 0.94612 1.01791 1.02100 1.22174 0.97346 0.96772 1.03108 1.22288 0.92952 0.93887 0.87376 0.87121 1.22213 0.96301 1.01217 0.98220 1.21128 0.92966 0.99932 0.95231 0.90668 1.22203 0.95165 0.98353 0.91275 1.62049 1.13984 1.07788 1.42230 1.22229 1.00301 0.89195 0.99110 1.19040 0.82904 0.93707 0.93561 1.02484 1.21642 1.01660 0.96509 0.97885 1.21470 0.93044 1.26086 1.14854 0.92056 1.25733 0.97407 0.96685 0.99062 1.70035 1.04640 1.40469 1.41104 0.85467 0.78239 0.78482 0.79203 1.19011 1.20806 1.20674 1.22010 0.96154 1.00522 0.98509 1.22633 0.92576 0.98266 0.88072 1.87927 1.74721 1.53980 1.14331 0.92131 0.92202 0.93079 0.90242 0.91773 0.90244 0.91815 0.96836 0.91923 0.97899 0.92294 0.90587 0.95000 0.92324 0.95417 0.93009 0.92894 0.91147 0.88347 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.81 71.98 0.71 -1.57 16 2 C -0.16 -2.79 4.74 30.59 0.15 -2.65 16 3 C 0.09 1.88 3.29 30.63 0.10 1.99 16 4 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 5 C -0.14 -3.27 4.93 30.68 0.15 -3.12 16 6 C -0.07 -2.05 1.88 -10.68 -0.02 -2.07 16 7 H 0.08 2.02 4.94 -2.38 -0.01 2.01 16 8 C 0.06 2.08 4.18 86.30 0.36 2.44 16 9 N -0.54 -22.72 4.14 -901.45 -3.74 -26.46 16 10 C 0.04 1.54 9.05 127.69 1.16 2.70 16 11 C 0.21 11.11 2.06 44.17 0.09 11.20 16 12 H -0.04 -2.46 8.14 -2.38 -0.02 -2.48 16 13 C -0.12 -5.95 8.76 71.98 0.63 -5.32 16 14 C -0.52 -28.51 7.88 25.60 0.20 -28.31 16 15 H 0.06 3.35 6.40 -2.92 -0.02 3.33 16 16 C 0.01 0.53 5.30 84.65 0.45 0.97 16 17 N -0.92 -53.69 11.32 21.45 0.24 -53.44 16 18 Si 0.96 43.83 29.54 68.60 2.03 45.85 16 19 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 22 C -0.13 -3.75 5.27 30.69 0.16 -3.58 16 23 C 0.06 1.40 6.52 72.02 0.47 1.87 16 24 O -0.39 -9.45 10.13 -148.98 -1.51 -10.96 16 25 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.05 0.89 7.82 -2.39 -0.02 0.87 16 28 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.06 1.26 4.98 -2.39 -0.01 1.25 16 30 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 32 H 0.01 0.49 8.12 -2.39 -0.02 0.48 16 33 H 0.06 2.36 5.83 -2.39 -0.01 2.35 16 34 H 0.00 0.10 8.14 -2.38 -0.02 0.08 16 35 H 0.06 2.46 6.10 -2.39 -0.01 2.45 16 36 H 0.08 2.40 6.38 -2.38 -0.02 2.38 16 37 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.06 3.24 6.07 -2.38 -0.01 3.22 16 39 H 0.03 1.23 6.20 -2.39 -0.01 1.21 16 40 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 41 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.07 2.20 7.85 -2.39 -0.02 2.18 16 43 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.06 1.26 6.23 -2.39 -0.01 1.24 16 Total: -1.00 -60.51 324.93 2.58 -57.94 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 0.95 Total: 12.52 kcal Atomic # 6 Polarization: -30.05 SS G_CDS: 4.60 Total: -25.45 kcal Atomic # 7 Polarization: -76.41 SS G_CDS: -3.49 Total: -79.90 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: -1.51 Total: -10.96 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Total: -60.51 2.58 -57.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356989361.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.599 kcal (2) G-P(sol) polarization free energy of solvation -60.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds