Wall clock time and date at job start Mon Mar 30 2020 07:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.47102 * 2 1 4 4 H 1.09000 * 109.47856 * 305.02399 * 3 2 1 5 5 C 1.53085 * 109.48384 * 185.00424 * 3 2 1 6 6 C 1.53174 * 109.16779 * 182.40519 * 5 3 2 7 7 H 1.08998 * 109.61765 * 297.07206 * 6 5 3 8 8 C 1.52998 * 109.54911 * 176.84469 * 6 5 3 9 9 N 1.46897 * 109.47042 * 65.73305 * 8 6 5 10 10 C 1.46898 * 110.99697 * 74.84271 * 9 8 6 11 11 C 1.46897 * 111.00031 * 198.79532 * 9 8 6 12 12 H 1.09010 * 109.47042 * 299.99880 * 11 9 8 13 13 C 1.52991 * 109.47554 * 60.00080 * 11 9 8 14 14 C 1.50700 * 109.47149 * 180.02562 * 11 9 8 15 15 H 1.08001 * 120.00201 * 359.97438 * 14 11 9 16 16 C 1.37878 * 120.00203 * 179.97438 * 14 11 9 17 17 N 1.31517 * 119.99768 * 0.02562 * 16 14 11 18 18 Si 1.86799 * 120.00114 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47066 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46798 * 119.99996 * 18 16 14 21 21 H 1.48505 * 109.47342 * 239.99950 * 18 16 14 22 22 C 1.53188 * 109.03424 * 56.97624 * 6 5 3 23 23 C 1.53085 * 109.16239 * 303.02262 * 22 6 5 24 24 O 1.42893 * 109.48182 * 65.04464 * 3 2 1 25 25 H 1.09000 * 109.47165 * 299.99989 * 1 2 3 26 26 H 1.08995 * 109.47364 * 60.00276 * 1 2 3 27 27 H 1.09003 * 109.46959 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47165 * 240.00011 * 2 1 3 29 29 H 1.08998 * 109.47627 * 119.99281 * 2 1 3 30 30 H 1.09001 * 109.52803 * 62.49816 * 5 3 2 31 31 H 1.09000 * 109.57637 * 302.34187 * 5 3 2 32 32 H 1.08997 * 109.47648 * 185.73857 * 8 6 5 33 33 H 1.09001 * 109.46874 * 305.73673 * 8 6 5 34 34 H 1.09002 * 109.47609 * 66.46768 * 10 9 8 35 35 H 1.09006 * 109.47114 * 186.46791 * 10 9 8 36 36 H 1.09002 * 109.47611 * 306.46558 * 10 9 8 37 37 H 1.09010 * 109.47109 * 59.99841 * 13 11 9 38 38 H 1.08998 * 109.47995 * 179.97438 * 13 11 9 39 39 H 1.09005 * 109.47439 * 300.00340 * 13 11 9 40 40 H 0.97004 * 119.99612 * 180.02562 * 17 16 14 41 41 H 1.09001 * 109.52309 * 183.11520 * 22 6 5 42 42 H 1.08997 * 109.56973 * 62.95984 * 22 6 5 43 43 H 1.08998 * 109.48057 * 177.58672 * 23 22 6 44 44 H 1.09002 * 109.48319 * 297.61142 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6050 1.9818 -0.8415 5 6 3.5656 1.4447 -0.1259 6 6 4.0732 2.8886 -0.0647 7 1 3.6802 3.4509 -0.9117 8 6 5.6025 2.8960 -0.1107 9 7 6.0555 2.3968 -1.4158 10 6 5.8564 3.4069 -2.4637 11 6 7.4595 1.9687 -1.3573 12 1 8.0853 2.8137 -1.0698 13 6 7.6088 0.8492 -0.3252 14 6 7.8879 1.4647 -2.7113 15 1 7.1871 1.4622 -3.5331 16 6 9.1745 1.0067 -2.9011 17 7 10.0277 1.0093 -1.9003 18 14 9.7052 0.3813 -4.5794 19 1 8.5672 0.4825 -5.5280 20 1 10.8386 1.2014 -5.0774 21 1 10.1321 -1.0367 -4.4670 22 6 3.5967 3.5307 1.2419 23 6 2.0698 3.4480 1.3149 24 8 1.6629 2.0813 1.2213 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 3.8533 0.9975 -1.0774 31 1 4.0004 0.8708 0.6925 32 1 5.9655 3.9133 0.0352 33 1 5.9928 2.2542 0.6792 34 1 6.5114 4.2580 -2.2773 35 1 6.0918 2.9733 -3.4357 36 1 4.8182 3.7389 -2.4559 37 1 6.9829 0.0042 -0.6127 38 1 8.6504 0.5312 -0.2820 39 1 7.2990 1.2141 0.6541 40 1 10.9329 0.6874 -2.0339 41 1 3.9066 4.5754 1.2686 42 1 4.0312 3.0002 2.0891 43 1 1.7281 3.8650 2.2622 44 1 1.6353 4.0139 0.4908 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356989381.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:32 Heat of formation + Delta-G solvation = -63.164592 kcal Electronic energy + Delta-G solvation = -20242.124960 eV Core-core repulsion = 17386.741493 eV Total energy + Delta-G solvation = -2855.383467 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.53389 -37.09975 -34.12282 -33.77168 -32.30308 -29.68605 -29.14722 -27.42402 -25.09198 -24.09049 -23.60619 -22.37076 -20.80287 -19.78364 -19.09772 -16.33366 -16.28598 -15.78617 -15.26823 -14.62095 -14.49157 -14.20532 -13.73138 -13.61922 -13.36765 -13.16072 -12.71213 -12.36836 -12.08611 -11.79894 -11.61606 -11.56159 -11.21247 -11.06671 -10.97272 -10.94826 -10.84751 -10.67867 -10.31019 -10.21503 -10.05173 -10.03330 -9.93340 -9.70125 -9.21232 -8.81426 -8.41346 -7.12760 -6.00544 -4.04809 3.29409 3.37358 3.41511 3.89126 4.40720 4.76601 4.83559 5.07195 5.12946 5.18699 5.22426 5.30208 5.37736 5.47715 5.50025 5.57808 5.76271 5.80888 5.91156 5.97037 6.00584 6.11245 6.14523 6.17136 6.23694 6.25587 6.35847 6.37001 6.50586 6.63695 6.72235 6.79920 6.89216 7.07385 7.17877 7.39194 7.54782 7.75202 7.84367 8.23167 8.34554 8.63135 9.02354 9.60357 11.06370 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.027914 B = 0.004933 C = 0.004590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.841153 B = 5674.219381 C = 6098.279834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C 0.089 3.911 4 H 0.052 0.948 5 C -0.131 4.131 6 C -0.081 4.081 7 H 0.065 0.935 8 C 0.054 3.946 9 N -0.535 5.535 10 C 0.039 3.961 11 C 0.211 3.789 12 H -0.004 1.004 13 C -0.132 4.132 14 C -0.501 4.501 15 H 0.063 0.937 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.895 3.105 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.284 1.284 22 C -0.152 4.152 23 C 0.066 3.934 24 O -0.383 6.383 25 H 0.059 0.941 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.019 0.981 33 H 0.075 0.925 34 H 0.010 0.990 35 H 0.072 0.928 36 H 0.041 0.959 37 H 0.034 0.966 38 H 0.084 0.916 39 H 0.008 0.992 40 H 0.259 0.741 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.087 0.913 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.952 2.785 4.876 15.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C 0.032 3.968 4 H 0.070 0.930 5 C -0.169 4.169 6 C -0.100 4.100 7 H 0.084 0.916 8 C -0.075 4.075 9 N -0.259 5.259 10 C -0.109 4.109 11 C 0.106 3.894 12 H 0.013 0.987 13 C -0.190 4.190 14 C -0.540 4.540 15 H 0.081 0.919 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.724 3.276 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.210 1.210 22 C -0.190 4.190 23 C -0.011 4.011 24 O -0.302 6.302 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.037 0.963 33 H 0.093 0.907 34 H 0.028 0.972 35 H 0.091 0.909 36 H 0.059 0.941 37 H 0.053 0.947 38 H 0.102 0.898 39 H 0.027 0.973 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.105 0.895 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -15.131 2.220 4.928 16.067 hybrid contribution 1.169 0.618 -0.858 1.576 sum -13.962 2.837 4.070 14.817 Atomic orbital electron populations 1.21717 0.95760 1.01156 1.01927 1.21539 0.96090 0.94829 1.02891 1.22223 0.94838 0.93426 0.86356 0.92990 1.22103 0.93731 0.96999 1.04037 1.21168 0.96427 0.96161 0.96224 0.91640 1.22163 0.93347 0.97670 0.94272 1.62076 1.24625 1.36533 1.02666 1.22201 0.97799 0.93450 0.97488 1.19239 0.81260 0.93105 0.95842 0.98684 1.21854 1.03301 0.99014 0.94806 1.21199 0.96186 1.41330 0.95263 0.91868 1.24938 0.96624 0.95900 0.96844 1.69909 1.05265 1.47658 1.30493 0.86483 0.78471 0.78469 0.84226 1.19774 1.21201 1.21041 1.22241 0.96352 1.01252 0.99169 1.22472 0.94063 0.83308 1.01245 1.87865 1.78695 1.24533 1.39144 0.92217 0.93149 0.93058 0.90469 0.91246 0.89383 0.91616 0.96258 0.90707 0.97153 0.90896 0.94072 0.94701 0.89765 0.97297 0.93094 0.91436 0.91162 0.89473 0.93739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.81 37.15 0.36 -1.17 16 2 C -0.12 -1.36 5.64 -26.73 -0.15 -1.51 16 3 C 0.09 1.17 2.64 -26.69 -0.07 1.09 16 4 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 5 C -0.13 -1.96 4.56 -26.60 -0.12 -2.08 16 6 C -0.08 -1.21 2.32 -90.43 -0.21 -1.42 16 7 H 0.07 0.98 6.63 -51.93 -0.34 0.64 16 8 C 0.05 0.98 4.24 -3.83 -0.02 0.96 16 9 N -0.53 -11.33 4.11 -236.29 -0.97 -12.30 16 10 C 0.04 0.77 9.03 60.06 0.54 1.31 16 11 C 0.21 5.34 2.06 -68.87 -0.14 5.20 16 12 H 0.00 -0.12 8.14 -51.92 -0.42 -0.55 16 13 C -0.13 -3.22 8.81 37.15 0.33 -2.89 16 14 C -0.50 -13.67 7.95 -34.44 -0.27 -13.94 16 15 H 0.06 1.72 6.40 -52.49 -0.34 1.38 16 16 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 17 N -0.89 -25.54 11.32 55.43 0.63 -24.92 16 18 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 C -0.15 -1.92 5.42 -26.59 -0.14 -2.06 16 23 C 0.07 0.77 6.84 37.20 0.25 1.02 16 24 O -0.38 -5.19 9.94 -35.23 -0.35 -5.54 16 25 H 0.06 0.65 7.82 -51.93 -0.41 0.24 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.09 1.46 7.88 -51.93 -0.41 1.05 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.02 0.35 8.01 -51.93 -0.42 -0.06 16 33 H 0.07 1.42 5.56 -51.93 -0.29 1.13 16 34 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.07 1.52 6.33 -51.93 -0.33 1.19 16 36 H 0.04 0.69 6.58 -51.93 -0.34 0.35 16 37 H 0.03 0.84 8.14 -51.92 -0.42 0.41 16 38 H 0.08 2.26 6.07 -51.93 -0.32 1.95 16 39 H 0.01 0.18 6.06 -51.93 -0.31 -0.13 16 40 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 332.37 15.07 5.01 5.01 Total: -1.00 -28.29 332.37 -8.57 -36.86 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -8.13 Total: -1.42 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: 0.27 Total: -13.98 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: -0.34 Total: -37.22 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: -0.35 Total: -5.54 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.29 -8.57 -36.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356989381.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.301 kcal (2) G-P(sol) polarization free energy of solvation -28.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds