Wall clock time and date at job start Mon Mar 30 2020 07:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.47102 * 2 1 4 4 H 1.09000 * 109.47856 * 305.02399 * 3 2 1 5 5 C 1.53085 * 109.48384 * 185.00424 * 3 2 1 6 6 C 1.53174 * 109.16779 * 182.40519 * 5 3 2 7 7 H 1.08998 * 109.61765 * 297.07206 * 6 5 3 8 8 C 1.52998 * 109.54911 * 176.84469 * 6 5 3 9 9 N 1.46897 * 109.47042 * 65.73305 * 8 6 5 10 10 C 1.46898 * 110.99697 * 74.84271 * 9 8 6 11 11 C 1.46897 * 111.00031 * 198.79532 * 9 8 6 12 12 H 1.09010 * 109.47042 * 299.99880 * 11 9 8 13 13 C 1.52991 * 109.47554 * 60.00080 * 11 9 8 14 14 C 1.50700 * 109.47149 * 180.02562 * 11 9 8 15 15 H 1.08001 * 120.00201 * 359.97438 * 14 11 9 16 16 C 1.37878 * 120.00203 * 179.97438 * 14 11 9 17 17 N 1.31517 * 119.99768 * 0.02562 * 16 14 11 18 18 Si 1.86799 * 120.00114 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47066 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46798 * 119.99996 * 18 16 14 21 21 H 1.48505 * 109.47342 * 239.99950 * 18 16 14 22 22 C 1.53188 * 109.03424 * 56.97624 * 6 5 3 23 23 C 1.53085 * 109.16239 * 303.02262 * 22 6 5 24 24 O 1.42893 * 109.48182 * 65.04464 * 3 2 1 25 25 H 1.09000 * 109.47165 * 299.99989 * 1 2 3 26 26 H 1.08995 * 109.47364 * 60.00276 * 1 2 3 27 27 H 1.09003 * 109.46959 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47165 * 240.00011 * 2 1 3 29 29 H 1.08998 * 109.47627 * 119.99281 * 2 1 3 30 30 H 1.09001 * 109.52803 * 62.49816 * 5 3 2 31 31 H 1.09000 * 109.57637 * 302.34187 * 5 3 2 32 32 H 1.08997 * 109.47648 * 185.73857 * 8 6 5 33 33 H 1.09001 * 109.46874 * 305.73673 * 8 6 5 34 34 H 1.09002 * 109.47609 * 66.46768 * 10 9 8 35 35 H 1.09006 * 109.47114 * 186.46791 * 10 9 8 36 36 H 1.09002 * 109.47611 * 306.46558 * 10 9 8 37 37 H 1.09010 * 109.47109 * 59.99841 * 13 11 9 38 38 H 1.08998 * 109.47995 * 179.97438 * 13 11 9 39 39 H 1.09005 * 109.47439 * 300.00340 * 13 11 9 40 40 H 0.97004 * 119.99612 * 180.02562 * 17 16 14 41 41 H 1.09001 * 109.52309 * 183.11520 * 22 6 5 42 42 H 1.08997 * 109.56973 * 62.95984 * 22 6 5 43 43 H 1.08998 * 109.48057 * 177.58672 * 23 22 6 44 44 H 1.09002 * 109.48319 * 297.61142 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6050 1.9818 -0.8415 5 6 3.5656 1.4447 -0.1259 6 6 4.0732 2.8886 -0.0647 7 1 3.6802 3.4509 -0.9117 8 6 5.6025 2.8960 -0.1107 9 7 6.0555 2.3968 -1.4158 10 6 5.8564 3.4069 -2.4637 11 6 7.4595 1.9687 -1.3573 12 1 8.0853 2.8137 -1.0698 13 6 7.6088 0.8492 -0.3252 14 6 7.8879 1.4647 -2.7113 15 1 7.1871 1.4622 -3.5331 16 6 9.1745 1.0067 -2.9011 17 7 10.0277 1.0093 -1.9003 18 14 9.7052 0.3813 -4.5794 19 1 8.5672 0.4825 -5.5280 20 1 10.8386 1.2014 -5.0774 21 1 10.1321 -1.0367 -4.4670 22 6 3.5967 3.5307 1.2419 23 6 2.0698 3.4480 1.3149 24 8 1.6629 2.0813 1.2213 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 3.8533 0.9975 -1.0774 31 1 4.0004 0.8708 0.6925 32 1 5.9655 3.9133 0.0352 33 1 5.9928 2.2542 0.6792 34 1 6.5114 4.2580 -2.2773 35 1 6.0918 2.9733 -3.4357 36 1 4.8182 3.7389 -2.4559 37 1 6.9829 0.0042 -0.6127 38 1 8.6504 0.5312 -0.2820 39 1 7.2990 1.2141 0.6541 40 1 10.9329 0.6874 -2.0339 41 1 3.9066 4.5754 1.2686 42 1 4.0312 3.0002 2.0891 43 1 1.7281 3.8650 2.2622 44 1 1.6353 4.0139 0.4908 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356989381.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:32 Heat of formation + Delta-G solvation = -79.289065 kcal Electronic energy + Delta-G solvation = -20242.824170 eV Core-core repulsion = 17386.741493 eV Total energy + Delta-G solvation = -2856.082677 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.65164 -38.72192 -35.57722 -34.82045 -34.06062 -31.11119 -30.63144 -28.91338 -26.92620 -25.66785 -24.66384 -23.75128 -21.91392 -21.21882 -20.64850 -18.35304 -17.31697 -17.17942 -16.68992 -16.22973 -15.71581 -15.49204 -15.33823 -15.02565 -14.55579 -14.27907 -14.14892 -13.91083 -13.70239 -13.14328 -12.99657 -12.80083 -12.71691 -12.60550 -12.54369 -12.43041 -12.11806 -12.01045 -11.96520 -11.94331 -11.76529 -11.42925 -11.18237 -11.04893 -10.84913 -10.51188 -10.26573 -8.89689 -8.11484 -6.23151 1.40729 1.42691 1.54298 2.42036 2.93584 3.16671 3.34794 3.69675 4.00116 4.02131 4.09007 4.25545 4.28920 4.43453 4.47202 4.50571 4.63430 4.66025 4.70230 4.75173 4.82332 4.90136 4.93317 4.95225 4.99353 5.06451 5.07103 5.09289 5.16949 5.24190 5.26235 5.30323 5.41008 5.48222 5.50716 5.55527 5.73756 5.79982 6.25705 6.40554 6.41401 6.76330 6.92640 7.46360 8.94887 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.027914 B = 0.004933 C = 0.004590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.841153 B = 5674.219381 C = 6098.279834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.118 4.118 3 C 0.094 3.906 4 H 0.059 0.941 5 C -0.126 4.126 6 C -0.074 4.074 7 H 0.071 0.929 8 C 0.056 3.944 9 N -0.537 5.537 10 C 0.043 3.957 11 C 0.216 3.784 12 H -0.042 1.042 13 C -0.118 4.118 14 C -0.516 4.516 15 H 0.060 0.940 16 C 0.010 3.990 17 N -0.922 5.922 18 Si 0.960 3.040 19 H -0.266 1.266 20 H -0.282 1.282 21 H -0.281 1.281 22 C -0.147 4.147 23 C 0.064 3.936 24 O -0.394 6.394 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.019 0.981 33 H 0.062 0.938 34 H 0.002 0.998 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.031 0.969 38 H 0.058 0.942 39 H 0.028 0.972 40 H 0.261 0.739 41 H 0.082 0.918 42 H 0.062 0.938 43 H 0.109 0.891 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.750 3.159 4.524 17.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.155 4.155 3 C 0.037 3.963 4 H 0.077 0.923 5 C -0.164 4.164 6 C -0.093 4.093 7 H 0.089 0.911 8 C -0.072 4.072 9 N -0.261 5.261 10 C -0.105 4.105 11 C 0.109 3.891 12 H -0.025 1.025 13 C -0.176 4.176 14 C -0.554 4.554 15 H 0.079 0.921 16 C -0.189 4.189 17 N -0.562 5.562 18 Si 0.786 3.214 19 H -0.190 1.190 20 H -0.208 1.208 21 H -0.207 1.207 22 C -0.185 4.185 23 C -0.012 4.012 24 O -0.314 6.314 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.037 0.963 33 H 0.081 0.919 34 H 0.021 0.979 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.050 0.950 38 H 0.077 0.923 39 H 0.046 0.954 40 H 0.070 0.930 41 H 0.100 0.900 42 H 0.081 0.919 43 H 0.127 0.873 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.950 2.603 4.582 17.751 hybrid contribution 1.726 0.543 -0.705 1.943 sum -15.224 3.146 3.876 16.022 Atomic orbital electron populations 1.21670 0.94417 1.01998 1.01949 1.21560 0.97259 0.93999 1.02687 1.22173 0.93161 0.94349 0.86636 0.92291 1.22024 0.95429 0.96627 1.02341 1.21105 0.93661 0.96536 0.97950 0.91093 1.22217 0.95718 0.97061 0.92199 1.62032 1.21755 1.37749 1.04593 1.22190 0.99627 0.92537 0.96190 1.19041 0.83011 0.91897 0.95179 1.02494 1.21653 1.01504 0.98674 0.95815 1.21466 0.96481 1.41432 0.96061 0.92142 1.25729 0.96701 0.96077 1.00366 1.70038 1.05540 1.48287 1.32364 0.85472 0.78108 0.77839 0.79996 1.19049 1.20804 1.20653 1.22210 0.97356 1.01717 0.97234 1.22639 0.92985 0.82610 1.03007 1.87866 1.78667 1.25615 1.39208 0.92727 0.92517 0.91876 0.90253 0.91944 0.91300 0.93044 0.96255 0.91937 0.97949 0.92384 0.90707 0.94998 0.92336 0.95358 0.93015 0.89958 0.91876 0.87300 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.81 71.98 0.71 -1.95 16 2 C -0.12 -2.60 5.64 30.59 0.17 -2.43 16 3 C 0.09 2.31 2.64 30.62 0.08 2.39 16 4 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 5 C -0.13 -3.67 4.56 30.68 0.14 -3.53 16 6 C -0.07 -2.08 2.32 -10.67 -0.02 -2.11 16 7 H 0.07 1.95 6.63 -2.39 -0.02 1.93 16 8 C 0.06 2.01 4.24 86.30 0.37 2.38 16 9 N -0.54 -22.80 4.11 -901.48 -3.71 -26.51 16 10 C 0.04 1.66 9.03 127.69 1.15 2.82 16 11 C 0.22 11.14 2.06 44.17 0.09 11.23 16 12 H -0.04 -2.47 8.14 -2.38 -0.02 -2.49 16 13 C -0.12 -5.92 8.81 71.98 0.63 -5.28 16 14 C -0.52 -28.53 7.95 25.60 0.20 -28.33 16 15 H 0.06 3.31 6.40 -2.91 -0.02 3.29 16 16 C 0.01 0.53 5.30 84.65 0.45 0.98 16 17 N -0.92 -53.66 11.32 21.45 0.24 -53.41 16 18 Si 0.96 43.87 29.54 68.60 2.03 45.90 16 19 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 20 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 22 C -0.15 -3.38 5.42 30.69 0.17 -3.21 16 23 C 0.06 1.29 6.84 72.01 0.49 1.78 16 24 O -0.39 -9.78 9.94 -148.98 -1.48 -11.26 16 25 H 0.05 1.07 7.82 -2.39 -0.02 1.05 16 26 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 28 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.07 2.26 7.88 -2.39 -0.02 2.24 16 31 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.02 0.69 8.01 -2.39 -0.02 0.67 16 33 H 0.06 2.38 5.56 -2.39 -0.01 2.36 16 34 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 35 H 0.06 2.41 6.33 -2.38 -0.02 2.39 16 36 H 0.07 2.37 6.58 -2.39 -0.02 2.36 16 37 H 0.03 1.55 8.14 -2.38 -0.02 1.53 16 38 H 0.06 3.23 6.07 -2.39 -0.01 3.21 16 39 H 0.03 1.25 6.06 -2.38 -0.01 1.24 16 40 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 41 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.11 1.75 8.14 -2.39 -0.02 1.74 16 44 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -60.67 332.37 2.64 -58.02 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: 0.93 Total: 12.52 kcal Atomic # 6 Polarization: -29.89 SS G_CDS: 4.63 Total: -25.26 kcal Atomic # 7 Polarization: -76.46 SS G_CDS: -3.47 Total: -79.92 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: -1.48 Total: -11.26 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -60.67 2.64 -58.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356989381.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.265 kcal (2) G-P(sol) polarization free energy of solvation -60.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds