Wall clock time and date at job start Mon Mar 30 2020 06:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99778 * 2 1 4 4 C 1.53004 * 109.46870 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46549 * 184.99800 * 4 3 2 6 6 N 1.46895 * 109.47324 * 64.99832 * 4 3 2 7 7 C 1.46898 * 111.00335 * 84.69204 * 6 4 3 8 8 H 1.08997 * 110.43529 * 329.24220 * 7 6 4 9 9 C 1.54891 * 110.48372 * 91.92638 * 7 6 4 10 10 C 1.54887 * 102.74962 * 156.62596 * 9 7 6 11 11 C 1.54268 * 104.19245 * 322.05520 * 10 9 7 12 12 H 1.09003 * 110.03419 * 264.32342 * 11 10 9 13 13 C 1.50697 * 110.07357 * 142.92030 * 11 10 9 14 14 H 1.07998 * 120.00071 * 275.64619 * 13 11 10 15 15 C 1.37880 * 120.00115 * 95.65024 * 13 11 10 16 16 N 1.31518 * 120.00067 * 178.59301 * 15 13 11 17 17 Si 1.86796 * 119.99942 * 358.58817 * 15 13 11 18 18 H 1.48504 * 109.46833 * 86.88305 * 17 15 13 19 19 H 1.48498 * 109.47233 * 206.87990 * 17 15 13 20 20 H 1.48497 * 109.47416 * 326.88537 * 17 15 13 21 21 C 1.53878 * 106.60179 * 23.61152 * 11 10 9 22 22 C 1.53001 * 109.47077 * 304.99366 * 4 3 2 23 23 C 1.53002 * 109.46918 * 182.70970 * 22 4 3 24 24 C 1.52998 * 109.47151 * 302.70876 * 22 4 3 25 25 H 1.09000 * 109.46835 * 180.02562 * 1 2 3 26 26 H 1.08991 * 109.47295 * 300.00372 * 1 2 3 27 27 H 1.09002 * 109.46468 * 60.00501 * 1 2 3 28 28 H 1.09001 * 109.47412 * 59.99166 * 3 2 1 29 29 H 1.09002 * 109.46897 * 299.98953 * 3 2 1 30 30 H 1.00902 * 111.00118 * 208.65169 * 6 4 3 31 31 H 1.09004 * 110.75355 * 274.93408 * 9 7 6 32 32 H 1.08997 * 110.76114 * 38.30444 * 9 7 6 33 33 H 1.09003 * 110.49118 * 203.38018 * 10 9 7 34 34 H 1.08998 * 110.60443 * 80.78715 * 10 9 7 35 35 H 0.96993 * 120.00136 * 180.02562 * 16 15 13 36 36 H 1.08996 * 110.03092 * 240.71764 * 21 11 10 37 37 H 1.08994 * 110.07378 * 119.30226 * 21 11 10 38 38 H 1.08996 * 109.46691 * 62.70971 * 22 4 3 39 39 H 1.08996 * 109.47179 * 53.66469 * 23 22 4 40 40 H 1.09003 * 109.46717 * 173.66721 * 23 22 4 41 41 H 1.08996 * 109.47031 * 293.65807 * 23 22 4 42 42 H 1.09000 * 109.46923 * 60.00116 * 24 22 4 43 43 H 1.08996 * 109.47211 * 179.97438 * 24 22 4 44 44 H 1.08995 * 109.47432 * 300.00216 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.9784 2.1766 0.0902 6 7 3.9779 0.5623 -1.2542 7 6 4.1139 1.5644 -2.3197 8 1 3.3990 2.3742 -2.1739 9 6 5.5606 2.1158 -2.3638 10 6 5.6858 2.6312 -3.8190 11 6 4.9149 1.5900 -4.6566 12 1 5.6059 0.8504 -5.0610 13 6 4.1760 2.2731 -5.7784 14 1 3.2020 2.7041 -5.5998 15 6 4.7435 2.3479 -7.0328 16 7 4.0870 2.9196 -8.0186 17 14 6.4449 1.6372 -7.3320 18 1 6.3268 0.1962 -7.6709 19 1 7.0919 2.3588 -8.4572 20 1 7.2685 1.7915 -6.1061 21 6 3.9154 0.9117 -3.7033 22 6 3.9781 0.3199 1.1827 23 6 5.5062 0.2547 1.2229 24 6 3.4594 0.9326 2.4852 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 1.6885 1.8465 0.8899 29 1 1.6887 1.8463 -0.8901 30 1 4.8405 0.0556 -1.1221 31 1 5.6845 2.9327 -1.6528 32 1 6.2826 1.3222 -2.1715 33 1 6.7320 2.6660 -4.1228 34 1 5.2277 3.6153 -3.9182 35 1 4.4860 2.9718 -8.9011 36 1 4.1215 -0.1570 -3.6450 37 1 2.8957 1.0767 -4.0511 38 1 3.5743 -0.6860 1.0682 39 1 5.9131 1.2658 1.2239 40 1 5.8239 -0.2659 2.1263 41 1 5.8700 -0.2826 0.3471 42 1 2.3707 0.9791 2.4566 43 1 3.7743 0.3163 3.3273 44 1 3.8631 1.9385 2.5997 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378724397.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:20 Heat of formation + Delta-G solvation = -69.605383 kcal Electronic energy + Delta-G solvation = -20104.856349 eV Core-core repulsion = 17249.193589 eV Total energy + Delta-G solvation = -2855.662761 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.07980 -37.41176 -36.05132 -33.10084 -31.79255 -29.20600 -28.21287 -27.39513 -26.50169 -25.47044 -23.48444 -22.45859 -19.96631 -19.64714 -18.56314 -17.07503 -16.46843 -16.07416 -15.46179 -15.10705 -14.91838 -14.36491 -13.87321 -13.41847 -13.25666 -13.21524 -12.62077 -12.37531 -12.30847 -12.18937 -12.13855 -11.93415 -11.55068 -11.30238 -11.05391 -10.95092 -10.69646 -10.61176 -10.39801 -10.23100 -10.04188 -9.95493 -9.59746 -9.46964 -9.34032 -8.84653 -8.46898 -7.91380 -6.01276 -3.98298 3.32930 3.40801 3.43664 3.92537 4.40926 4.48106 4.73049 4.84389 4.99049 5.24491 5.26277 5.37978 5.41671 5.46827 5.47434 5.48824 5.57887 5.59834 5.66270 5.70758 5.74615 5.79933 5.84605 5.87251 6.06214 6.14760 6.21903 6.32835 6.39486 6.44202 6.55165 6.70028 6.88512 6.97010 7.04083 7.29671 7.44653 7.52755 7.57062 7.77730 7.89196 8.62476 9.04341 9.62952 11.12444 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.027936 B = 0.005082 C = 0.004539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.054881 B = 5508.580579 C = 6167.855760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.369 6.369 3 C 0.072 3.928 4 C 0.095 3.905 5 H 0.053 0.947 6 N -0.672 5.672 7 C 0.084 3.916 8 H 0.072 0.928 9 C -0.152 4.152 10 C -0.118 4.118 11 C 0.010 3.990 12 H 0.028 0.972 13 C -0.503 4.503 14 H 0.072 0.928 15 C 0.067 3.933 16 N -0.906 5.906 17 Si 0.879 3.121 18 H -0.278 1.278 19 H -0.292 1.292 20 H -0.265 1.265 21 C -0.094 4.094 22 C -0.094 4.094 23 C -0.152 4.152 24 C -0.144 4.144 25 H 0.081 0.919 26 H 0.032 0.968 27 H 0.039 0.961 28 H 0.045 0.955 29 H 0.049 0.951 30 H 0.339 0.661 31 H 0.047 0.953 32 H 0.056 0.944 33 H 0.043 0.957 34 H 0.064 0.936 35 H 0.262 0.738 36 H 0.050 0.950 37 H 0.062 0.938 38 H 0.087 0.913 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.053 0.947 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.030 -4.062 19.988 20.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.288 6.288 3 C -0.005 4.005 4 C -0.016 4.016 5 H 0.071 0.929 6 N -0.303 5.303 7 C -0.025 4.025 8 H 0.090 0.910 9 C -0.192 4.192 10 C -0.157 4.157 11 C -0.010 4.010 12 H 0.047 0.953 13 C -0.541 4.541 14 H 0.090 0.910 15 C -0.134 4.134 16 N -0.544 5.544 17 Si 0.707 3.293 18 H -0.204 1.204 19 H -0.218 1.218 20 H -0.190 1.190 21 C -0.133 4.133 22 C -0.113 4.113 23 C -0.210 4.210 24 C -0.202 4.202 25 H 0.100 0.900 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.160 0.840 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.550 -4.377 19.596 20.139 hybrid contribution 1.497 0.494 -0.112 1.580 sum -0.054 -3.883 19.484 19.867 Atomic orbital electron populations 1.22691 0.82223 1.02279 0.99438 1.87960 1.18354 1.27283 1.95166 1.22613 0.93630 0.85007 0.99269 1.21587 0.93265 0.96592 0.90116 0.92890 1.60633 1.37438 1.27307 1.04963 1.22568 0.95009 0.92808 0.92163 0.90977 1.23181 0.97480 0.99576 0.98928 1.22666 0.99506 1.00953 0.92525 1.19728 0.93673 0.93399 0.94177 0.95340 1.21138 1.04655 1.35709 0.92608 0.91005 1.25093 0.97253 0.94943 0.96120 1.69910 1.38018 1.44895 1.01602 0.86845 0.85422 0.79323 0.77753 1.20384 1.21801 1.18997 1.22163 1.00821 0.98385 0.91885 1.21162 0.95248 1.01002 0.93873 1.21915 0.95648 1.01656 1.01740 1.21842 1.01193 1.00400 0.96781 0.90039 0.94932 0.94202 0.93745 0.93312 0.84036 0.93440 0.92555 0.93789 0.91754 0.92831 0.93132 0.91960 0.89472 0.92933 0.92577 0.92419 0.92430 0.92808 0.93088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.37 -5.07 9.82 -35.23 -0.35 -5.41 16 3 C 0.07 0.92 5.08 37.16 0.19 1.11 16 4 C 0.09 1.20 1.88 -67.71 -0.13 1.07 16 5 H 0.05 0.67 7.86 -51.93 -0.41 0.26 16 6 N -0.67 -9.99 6.06 -98.01 -0.59 -10.59 16 7 C 0.08 1.45 2.92 -66.05 -0.19 1.25 16 8 H 0.07 1.27 7.18 -51.93 -0.37 0.90 16 9 C -0.15 -2.57 6.46 -24.74 -0.16 -2.73 16 10 C -0.12 -2.46 6.32 -25.07 -0.16 -2.62 16 11 C 0.01 0.23 2.39 -90.65 -0.22 0.01 16 12 H 0.03 0.69 5.64 -51.93 -0.29 0.39 16 13 C -0.50 -14.17 8.56 -34.44 -0.29 -14.46 16 14 H 0.07 2.20 7.96 -52.49 -0.42 1.78 16 15 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 16 N -0.91 -28.01 13.96 55.43 0.77 -27.23 16 17 Si 0.88 21.93 26.89 -169.99 -4.57 17.36 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 20 H -0.27 -6.32 6.35 56.52 0.36 -5.96 16 21 C -0.09 -1.95 6.18 -25.61 -0.16 -2.11 16 22 C -0.09 -1.02 2.39 -90.62 -0.22 -1.23 16 23 C -0.15 -1.50 8.86 37.16 0.33 -1.17 16 24 C -0.14 -1.33 8.77 37.16 0.33 -1.01 16 25 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.04 0.48 6.67 -51.93 -0.35 0.14 16 29 H 0.05 0.69 7.45 -51.93 -0.39 0.30 16 30 H 0.34 4.78 5.90 -39.29 -0.23 4.54 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.89 7.78 -51.93 -0.40 0.49 16 33 H 0.04 0.92 7.51 -51.93 -0.39 0.53 16 34 H 0.06 1.40 7.85 -51.93 -0.41 1.00 16 35 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 36 H 0.05 1.01 8.04 -51.93 -0.42 0.60 16 37 H 0.06 1.39 7.60 -51.93 -0.39 0.99 16 38 H 0.09 1.07 7.65 -51.93 -0.40 0.68 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.59 6.57 -51.93 -0.34 0.25 16 42 H 0.06 0.54 6.49 -51.93 -0.34 0.20 16 43 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 335.19 15.07 5.05 5.05 Total: -1.00 -30.19 335.19 -7.46 -37.65 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -8.11 Total: 1.79 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: 0.33 Total: -18.61 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.18 Total: -37.82 kcal Atomic # 8 Polarization: -5.07 SS G_CDS: -0.35 Total: -5.41 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.57 Total: 17.36 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.19 -7.46 -37.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378724397.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.960 kcal (2) G-P(sol) polarization free energy of solvation -30.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds