Wall clock time and date at job start Mon Mar 30 2020 06:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99778 * 2 1 4 4 C 1.53004 * 109.46870 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46549 * 184.99800 * 4 3 2 6 6 N 1.46895 * 109.47324 * 64.99832 * 4 3 2 7 7 C 1.46898 * 111.00335 * 84.69204 * 6 4 3 8 8 H 1.08997 * 110.43529 * 329.24220 * 7 6 4 9 9 C 1.54891 * 110.48372 * 91.92638 * 7 6 4 10 10 C 1.54887 * 102.74962 * 156.62596 * 9 7 6 11 11 C 1.54268 * 104.19245 * 322.05520 * 10 9 7 12 12 H 1.09003 * 110.03419 * 264.32342 * 11 10 9 13 13 C 1.50697 * 110.07357 * 142.92030 * 11 10 9 14 14 H 1.07998 * 120.00071 * 275.64619 * 13 11 10 15 15 C 1.37880 * 120.00115 * 95.65024 * 13 11 10 16 16 N 1.31518 * 120.00067 * 178.59301 * 15 13 11 17 17 Si 1.86796 * 119.99942 * 358.58817 * 15 13 11 18 18 H 1.48504 * 109.46833 * 86.88305 * 17 15 13 19 19 H 1.48498 * 109.47233 * 206.87990 * 17 15 13 20 20 H 1.48497 * 109.47416 * 326.88537 * 17 15 13 21 21 C 1.53878 * 106.60179 * 23.61152 * 11 10 9 22 22 C 1.53001 * 109.47077 * 304.99366 * 4 3 2 23 23 C 1.53002 * 109.46918 * 182.70970 * 22 4 3 24 24 C 1.52998 * 109.47151 * 302.70876 * 22 4 3 25 25 H 1.09000 * 109.46835 * 180.02562 * 1 2 3 26 26 H 1.08991 * 109.47295 * 300.00372 * 1 2 3 27 27 H 1.09002 * 109.46468 * 60.00501 * 1 2 3 28 28 H 1.09001 * 109.47412 * 59.99166 * 3 2 1 29 29 H 1.09002 * 109.46897 * 299.98953 * 3 2 1 30 30 H 1.00902 * 111.00118 * 208.65169 * 6 4 3 31 31 H 1.09004 * 110.75355 * 274.93408 * 9 7 6 32 32 H 1.08997 * 110.76114 * 38.30444 * 9 7 6 33 33 H 1.09003 * 110.49118 * 203.38018 * 10 9 7 34 34 H 1.08998 * 110.60443 * 80.78715 * 10 9 7 35 35 H 0.96993 * 120.00136 * 180.02562 * 16 15 13 36 36 H 1.08996 * 110.03092 * 240.71764 * 21 11 10 37 37 H 1.08994 * 110.07378 * 119.30226 * 21 11 10 38 38 H 1.08996 * 109.46691 * 62.70971 * 22 4 3 39 39 H 1.08996 * 109.47179 * 53.66469 * 23 22 4 40 40 H 1.09003 * 109.46717 * 173.66721 * 23 22 4 41 41 H 1.08996 * 109.47031 * 293.65807 * 23 22 4 42 42 H 1.09000 * 109.46923 * 60.00116 * 24 22 4 43 43 H 1.08996 * 109.47211 * 179.97438 * 24 22 4 44 44 H 1.08995 * 109.47432 * 300.00216 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.9784 2.1766 0.0902 6 7 3.9779 0.5623 -1.2542 7 6 4.1139 1.5644 -2.3197 8 1 3.3990 2.3742 -2.1739 9 6 5.5606 2.1158 -2.3638 10 6 5.6858 2.6312 -3.8190 11 6 4.9149 1.5900 -4.6566 12 1 5.6059 0.8504 -5.0610 13 6 4.1760 2.2731 -5.7784 14 1 3.2020 2.7041 -5.5998 15 6 4.7435 2.3479 -7.0328 16 7 4.0870 2.9196 -8.0186 17 14 6.4449 1.6372 -7.3320 18 1 6.3268 0.1962 -7.6709 19 1 7.0919 2.3588 -8.4572 20 1 7.2685 1.7915 -6.1061 21 6 3.9154 0.9117 -3.7033 22 6 3.9781 0.3199 1.1827 23 6 5.5062 0.2547 1.2229 24 6 3.4594 0.9326 2.4852 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 1.6885 1.8465 0.8899 29 1 1.6887 1.8463 -0.8901 30 1 4.8405 0.0556 -1.1221 31 1 5.6845 2.9327 -1.6528 32 1 6.2826 1.3222 -2.1715 33 1 6.7320 2.6660 -4.1228 34 1 5.2277 3.6153 -3.9182 35 1 4.4860 2.9718 -8.9011 36 1 4.1215 -0.1570 -3.6450 37 1 2.8957 1.0767 -4.0511 38 1 3.5743 -0.6860 1.0682 39 1 5.9131 1.2658 1.2239 40 1 5.8239 -0.2659 2.1263 41 1 5.8700 -0.2826 0.3471 42 1 2.3707 0.9791 2.4566 43 1 3.7743 0.3163 3.3273 44 1 3.8631 1.9385 2.5997 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378724397.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:20 Heat of formation + Delta-G solvation = -89.231375 kcal Electronic energy + Delta-G solvation = -20105.707396 eV Core-core repulsion = 17249.193589 eV Total energy + Delta-G solvation = -2856.513807 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.23081 -38.74808 -37.12174 -34.82884 -33.43276 -30.40772 -29.77079 -28.61102 -27.50281 -26.57006 -25.23625 -23.53200 -21.34230 -20.80402 -20.21334 -19.18047 -17.53659 -17.09776 -16.60896 -16.42096 -16.25361 -15.84411 -14.99225 -14.93575 -14.57401 -14.32476 -14.17051 -13.91404 -13.56572 -13.18597 -13.11185 -13.00830 -12.80575 -12.65710 -12.49151 -12.23818 -12.05820 -11.91396 -11.69556 -11.65195 -11.55270 -11.44935 -11.22363 -11.07378 -10.85790 -10.66033 -10.43544 -9.12449 -8.26330 -6.27948 1.35553 1.36472 1.48467 2.37391 2.97923 3.07958 3.30113 3.83318 3.91820 3.96041 4.09083 4.20901 4.27144 4.42685 4.50506 4.54004 4.59589 4.67290 4.68378 4.70287 4.73020 4.85360 4.88334 4.92884 4.93691 4.97767 5.03344 5.08622 5.10130 5.17019 5.28573 5.31345 5.39869 5.50023 5.55641 5.59990 5.73104 5.80175 6.22468 6.38453 6.45221 6.64554 6.78736 7.36327 8.91224 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.027936 B = 0.005082 C = 0.004539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.054881 B = 5508.580579 C = 6167.855760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.390 6.390 3 C 0.071 3.929 4 C 0.094 3.906 5 H 0.060 0.940 6 N -0.676 5.676 7 C 0.098 3.902 8 H 0.063 0.937 9 C -0.136 4.136 10 C -0.117 4.117 11 C 0.004 3.996 12 H 0.029 0.971 13 C -0.507 4.507 14 H 0.026 0.974 15 C 0.004 3.996 16 N -0.957 5.957 17 Si 0.946 3.054 18 H -0.270 1.270 19 H -0.290 1.290 20 H -0.242 1.242 21 C -0.091 4.091 22 C -0.087 4.087 23 C -0.150 4.150 24 C -0.141 4.141 25 H 0.092 0.908 26 H 0.052 0.948 27 H 0.031 0.969 28 H 0.066 0.934 29 H 0.027 0.973 30 H 0.346 0.654 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.049 0.951 34 H 0.046 0.954 35 H 0.264 0.736 36 H 0.057 0.943 37 H 0.031 0.969 38 H 0.071 0.929 39 H 0.056 0.944 40 H 0.068 0.932 41 H 0.053 0.947 42 H 0.054 0.946 43 H 0.064 0.936 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.944 -4.899 22.637 23.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.309 6.309 3 C -0.007 4.007 4 C -0.016 4.016 5 H 0.078 0.922 6 N -0.309 5.309 7 C -0.012 4.012 8 H 0.082 0.918 9 C -0.175 4.175 10 C -0.155 4.155 11 C -0.015 4.015 12 H 0.047 0.953 13 C -0.545 4.545 14 H 0.045 0.955 15 C -0.191 4.191 16 N -0.598 5.598 17 Si 0.770 3.230 18 H -0.196 1.196 19 H -0.216 1.216 20 H -0.165 1.165 21 C -0.130 4.130 22 C -0.106 4.106 23 C -0.208 4.208 24 C -0.199 4.199 25 H 0.111 0.889 26 H 0.070 0.930 27 H 0.049 0.951 28 H 0.084 0.916 29 H 0.046 0.954 30 H 0.168 0.832 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.050 0.950 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.419 -5.223 22.281 22.889 hybrid contribution 0.722 0.762 -0.921 1.396 sum 1.141 -4.461 21.361 21.851 Atomic orbital electron populations 1.22835 0.80953 1.03274 0.99980 1.87922 1.19875 1.27809 1.95283 1.22659 0.93912 0.84811 0.99284 1.21686 0.93114 0.97163 0.89644 0.92239 1.60496 1.37962 1.26859 1.05584 1.22256 0.95372 0.92619 0.90995 0.91834 1.23082 0.97231 1.00767 0.96428 1.22504 0.98888 0.99169 0.94961 1.19758 0.94163 0.93965 0.93645 0.95269 1.21421 1.03303 1.35260 0.94525 0.95537 1.26007 1.01824 0.95554 0.95745 1.70071 1.40323 1.47100 1.02266 0.85763 0.80178 0.78599 0.78474 1.19553 1.21599 1.16492 1.22026 0.98304 0.98888 0.93745 1.21081 0.96047 0.99739 0.93725 1.21901 0.94614 1.02021 1.02221 1.21813 1.00983 1.00933 0.96144 0.88909 0.92950 0.95059 0.91557 0.95448 0.83199 0.90971 0.90541 0.93234 0.93545 0.92747 0.92389 0.94960 0.91047 0.92527 0.91312 0.92839 0.92744 0.91697 0.92294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 113.37 1.25 1.78 16 2 O -0.39 -10.30 9.82 -148.98 -1.46 -11.76 16 3 C 0.07 1.72 5.08 71.98 0.37 2.08 16 4 C 0.09 2.17 1.88 44.92 0.08 2.25 16 5 H 0.06 1.33 7.86 -2.39 -0.02 1.31 16 6 N -0.68 -18.87 6.06 -463.99 -2.81 -21.68 16 7 C 0.10 3.24 2.92 45.99 0.13 3.37 16 8 H 0.06 2.22 7.18 -2.39 -0.02 2.21 16 9 C -0.14 -4.17 6.46 31.89 0.21 -3.96 16 10 C -0.12 -4.69 6.32 31.67 0.20 -4.49 16 11 C 0.00 0.19 2.39 -10.81 -0.03 0.16 16 12 H 0.03 1.36 5.64 -2.39 -0.01 1.34 16 13 C -0.51 -29.58 8.56 25.60 0.22 -29.36 16 14 H 0.03 1.73 7.96 -2.91 -0.02 1.70 16 15 C 0.00 0.27 5.47 84.65 0.46 0.73 16 16 N -0.96 -61.29 13.96 21.45 0.30 -60.99 16 17 Si 0.95 45.13 26.89 68.60 1.84 46.97 16 18 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 19 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 20 H -0.24 -10.51 6.35 99.48 0.63 -9.88 16 21 C -0.09 -3.79 6.18 31.32 0.19 -3.59 16 22 C -0.09 -1.65 2.39 -10.79 -0.03 -1.68 16 23 C -0.15 -2.46 8.86 71.98 0.64 -1.82 16 24 C -0.14 -2.17 8.77 71.98 0.63 -1.54 16 25 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.07 1.30 6.67 -2.39 -0.02 1.29 16 29 H 0.03 0.77 7.45 -2.39 -0.02 0.75 16 30 H 0.35 8.80 5.90 -89.69 -0.53 8.27 16 31 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 32 H 0.08 2.09 7.78 -2.39 -0.02 2.07 16 33 H 0.05 1.92 7.51 -2.39 -0.02 1.91 16 34 H 0.05 2.01 7.85 -2.39 -0.02 1.99 16 35 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 36 H 0.06 2.29 8.04 -2.39 -0.02 2.27 16 37 H 0.03 1.49 7.60 -2.39 -0.02 1.48 16 38 H 0.07 1.61 7.65 -2.39 -0.02 1.59 16 39 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.05 0.92 6.57 -2.39 -0.02 0.90 16 42 H 0.05 0.87 6.49 -2.39 -0.02 0.86 16 43 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -67.23 335.19 2.54 -64.69 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: 0.34 Total: 18.84 kcal Atomic # 6 Polarization: -40.40 SS G_CDS: 4.33 Total: -36.07 kcal Atomic # 7 Polarization: -80.16 SS G_CDS: -2.51 Total: -82.67 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: -1.46 Total: -11.76 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.84 Total: 46.97 kcal Total: -67.23 2.54 -64.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378724397.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.544 kcal (2) G-P(sol) polarization free energy of solvation -67.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds