Wall clock time and date at job start Mon Mar 30 2020 06:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 114.00051 * 2 1 4 4 C 1.52997 * 109.47086 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46751 * 181.39696 * 4 3 2 6 6 N 1.46909 * 109.46814 * 61.40327 * 4 3 2 7 7 C 1.46896 * 110.99692 * 154.99662 * 6 4 3 8 8 H 1.09004 * 110.43700 * 323.91532 * 7 6 4 9 9 C 1.54268 * 110.48711 * 86.45034 * 7 6 4 10 10 C 1.53873 * 106.59835 * 142.41558 * 9 7 6 11 11 C 1.54265 * 106.59931 * 0.02562 * 10 9 7 12 12 H 1.08998 * 110.48877 * 95.19840 * 11 10 9 13 13 C 1.50703 * 110.48699 * 217.70869 * 11 10 9 14 14 H 1.07993 * 120.00021 * 116.75960 * 13 11 10 15 15 C 1.37881 * 119.99967 * 297.03123 * 13 11 10 16 16 N 1.31512 * 119.99970 * 179.72377 * 15 13 11 17 17 Si 1.86801 * 119.99874 * 359.72752 * 15 13 11 18 18 H 1.48498 * 109.47213 * 89.99787 * 17 15 13 19 19 H 1.48505 * 109.47010 * 209.99828 * 17 15 13 20 20 H 1.48504 * 109.47018 * 329.99594 * 17 15 13 21 21 C 1.54885 * 104.31224 * 336.45425 * 11 10 9 22 22 C 1.52991 * 109.47321 * 301.40338 * 4 3 2 23 23 C 1.53000 * 109.47027 * 300.20642 * 22 4 3 24 24 C 1.52996 * 109.47390 * 60.20582 * 22 4 3 25 25 H 1.09008 * 109.46736 * 60.00057 * 1 2 3 26 26 H 1.08998 * 109.47485 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47246 * 300.00526 * 1 2 3 28 28 H 1.09000 * 109.46873 * 59.99427 * 3 2 1 29 29 H 1.09004 * 109.46854 * 300.00157 * 3 2 1 30 30 H 1.00893 * 110.99968 * 278.94852 * 6 4 3 31 31 H 1.09001 * 110.03013 * 23.13938 * 9 7 6 32 32 H 1.08996 * 110.07807 * 261.72497 * 9 7 6 33 33 H 1.09001 * 110.03476 * 240.72037 * 10 9 7 34 34 H 1.09003 * 110.07233 * 119.31167 * 10 9 7 35 35 H 0.96993 * 119.99805 * 180.02562 * 16 15 13 36 36 H 1.08997 * 110.75792 * 156.19391 * 21 11 10 37 37 H 1.09007 * 110.75523 * 279.56124 * 21 11 10 38 38 H 1.09003 * 109.47040 * 180.20629 * 22 4 3 39 39 H 1.09003 * 109.47330 * 299.99945 * 23 22 4 40 40 H 1.08996 * 109.47560 * 60.00139 * 23 22 4 41 41 H 1.09002 * 109.47303 * 180.02562 * 23 22 4 42 42 H 1.09004 * 109.46910 * 49.08091 * 24 22 4 43 43 H 1.08999 * 109.47297 * 169.07615 * 24 22 4 44 44 H 1.09001 * 109.47216 * 289.08268 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9787 2.1802 0.0257 6 7 3.9717 0.4849 -1.2152 7 6 5.3520 0.8466 -1.5641 8 1 5.5405 1.8952 -1.3336 9 6 6.3528 -0.0587 -0.8168 10 6 7.5076 -0.3383 -1.7946 11 6 7.1685 0.4075 -3.1018 12 1 7.6524 1.3839 -3.1205 13 6 7.5849 -0.4090 -4.2980 14 1 6.8404 -0.7633 -4.9956 15 6 8.9157 -0.7085 -4.4989 16 7 9.2784 -1.4257 -5.5399 17 14 10.2034 -0.0957 -3.2923 18 1 10.3950 -1.1035 -2.2186 19 1 11.4882 0.1180 -4.0057 20 1 9.7506 1.1856 -2.6935 21 6 5.6283 0.5664 -3.0634 22 6 3.9840 0.3954 1.2321 23 6 3.5252 1.1215 2.4982 24 6 3.3659 -1.0037 1.1942 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.6885 1.8464 0.8899 29 1 1.6886 1.8464 -0.8900 30 1 3.8748 -0.5141 -1.1119 31 1 5.8700 -0.9936 -0.5322 32 1 6.7294 0.4517 0.0696 33 1 7.5852 -1.4088 -1.9845 34 1 8.4449 0.0367 -1.3835 35 1 10.2146 -1.6367 -5.6810 36 1 5.3112 1.4070 -3.6807 37 1 5.1370 -0.3537 -3.3800 38 1 5.0709 0.3125 1.2344 39 1 3.9655 2.1183 2.5253 40 1 2.4384 1.2044 2.4959 41 1 3.8451 0.5594 3.3756 42 1 3.5304 -1.4471 0.2121 43 1 3.8317 -1.6275 1.9571 44 1 2.2953 -0.9332 1.3863 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378724398.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:23 Heat of formation + Delta-G solvation = -57.596650 kcal Electronic energy + Delta-G solvation = -20336.615927 eV Core-core repulsion = 17481.473904 eV Total energy + Delta-G solvation = -2855.142023 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.41922 -37.58803 -35.84988 -32.96157 -31.73895 -29.21028 -28.16084 -27.38776 -26.77932 -25.49779 -23.16591 -22.97928 -19.97215 -19.27932 -19.06333 -16.84734 -16.63258 -16.28565 -15.49490 -14.85856 -14.76086 -14.38531 -14.14057 -13.83454 -13.24637 -12.83799 -12.62955 -12.44611 -12.33582 -12.14397 -11.95368 -11.83000 -11.76202 -11.45886 -11.03932 -10.86129 -10.76167 -10.66238 -10.32765 -10.17101 -9.90200 -9.81881 -9.63347 -9.45152 -9.30351 -8.88821 -8.48423 -7.95011 -6.00389 -3.98056 3.33134 3.41479 3.43782 3.79886 4.42398 4.48203 4.81066 4.87405 5.09189 5.17228 5.23665 5.26806 5.35120 5.38469 5.46032 5.49055 5.55779 5.58964 5.64085 5.69774 5.74093 5.86634 5.98019 6.01687 6.08218 6.17928 6.31256 6.35798 6.48136 6.54120 6.60639 6.67782 6.81723 6.92213 7.01771 7.14285 7.27614 7.48605 7.67764 7.79898 7.88240 8.62405 9.05092 9.63332 11.13222 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.034796 B = 0.004948 C = 0.004624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.501713 B = 5657.062100 C = 6054.491763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.370 6.370 3 C 0.071 3.929 4 C 0.093 3.907 5 H 0.085 0.915 6 N -0.673 5.673 7 C 0.078 3.922 8 H 0.071 0.929 9 C -0.146 4.146 10 C -0.129 4.129 11 C 0.010 3.990 12 H 0.029 0.971 13 C -0.505 4.505 14 H 0.073 0.927 15 C 0.069 3.931 16 N -0.905 5.905 17 Si 0.880 3.120 18 H -0.279 1.279 19 H -0.295 1.295 20 H -0.266 1.266 21 C -0.088 4.088 22 C -0.128 4.128 23 C -0.144 4.144 24 C -0.146 4.146 25 H 0.038 0.962 26 H 0.081 0.919 27 H 0.034 0.966 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.348 0.652 31 H 0.056 0.944 32 H 0.046 0.954 33 H 0.065 0.935 34 H 0.038 0.962 35 H 0.262 0.738 36 H 0.053 0.947 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.050 0.950 40 H 0.055 0.945 41 H 0.050 0.950 42 H 0.055 0.945 43 H 0.039 0.961 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.648 5.212 15.686 22.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.289 6.289 3 C -0.006 4.006 4 C -0.018 4.018 5 H 0.103 0.897 6 N -0.305 5.305 7 C -0.031 4.031 8 H 0.089 0.911 9 C -0.185 4.185 10 C -0.167 4.167 11 C -0.010 4.010 12 H 0.047 0.953 13 C -0.543 4.543 14 H 0.091 0.909 15 C -0.132 4.132 16 N -0.544 5.544 17 Si 0.709 3.291 18 H -0.205 1.205 19 H -0.222 1.222 20 H -0.191 1.191 21 C -0.127 4.127 22 C -0.148 4.148 23 C -0.202 4.202 24 C -0.203 4.203 25 H 0.057 0.943 26 H 0.100 0.900 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.171 0.829 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.058 0.942 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.677 5.415 15.143 21.772 hybrid contribution 1.237 -0.030 1.370 1.846 sum -13.440 5.385 16.512 21.961 Atomic orbital electron populations 1.22698 0.82535 1.02318 0.99496 1.88113 1.18419 1.27517 1.94866 1.22651 0.93462 0.84957 0.99529 1.21720 0.92993 0.98067 0.88990 0.89714 1.60767 1.22850 1.13683 1.33191 1.22661 0.85307 0.97856 0.97296 0.91061 1.22907 0.98405 0.99021 0.98172 1.22586 0.95458 1.01931 0.96764 1.19962 0.92191 0.95767 0.93044 0.95313 1.21069 0.93394 1.32127 1.07731 0.90853 1.25005 0.98456 0.94616 0.95116 1.69910 1.16956 1.38955 1.28568 0.86908 0.80909 0.80021 0.81266 1.20514 1.22198 1.19052 1.22367 0.97339 1.00750 0.92199 1.21867 1.00803 0.96748 0.95387 1.21846 1.01106 0.99833 0.97366 1.22019 1.02367 0.94913 1.01000 0.94294 0.90049 0.94749 0.93515 0.92895 0.82900 0.92560 0.93482 0.91581 0.94336 0.92830 0.92799 0.91690 0.90949 0.93135 0.92639 0.93047 0.92579 0.94217 0.89983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.34 16 2 O -0.37 -4.18 6.67 -35.23 -0.23 -4.41 16 3 C 0.07 0.77 5.34 37.16 0.20 0.96 16 4 C 0.09 1.12 2.40 -67.71 -0.16 0.96 16 5 H 0.08 1.01 7.47 -51.93 -0.39 0.62 16 6 N -0.67 -9.91 6.03 -97.94 -0.59 -10.50 16 7 C 0.08 1.31 3.15 -65.99 -0.21 1.11 16 8 H 0.07 1.16 7.51 -51.93 -0.39 0.77 16 9 C -0.15 -2.53 4.88 -25.61 -0.13 -2.65 16 10 C -0.13 -2.79 4.75 -25.61 -0.12 -2.91 16 11 C 0.01 0.23 2.28 -90.11 -0.21 0.02 16 12 H 0.03 0.70 7.20 -51.93 -0.37 0.32 16 13 C -0.51 -14.36 8.97 -34.44 -0.31 -14.67 16 14 H 0.07 2.26 8.02 -52.49 -0.42 1.84 16 15 C 0.07 2.02 5.46 -17.82 -0.10 1.92 16 16 N -0.91 -28.14 13.96 55.43 0.77 -27.37 16 17 Si 0.88 22.18 24.75 -169.99 -4.21 17.97 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 20 H -0.27 -6.42 6.40 56.52 0.36 -6.06 16 21 C -0.09 -1.79 5.99 -24.68 -0.15 -1.94 16 22 C -0.13 -1.46 2.61 -90.63 -0.24 -1.70 16 23 C -0.14 -1.37 8.81 37.16 0.33 -1.05 16 24 C -0.15 -1.70 7.84 37.16 0.29 -1.41 16 25 H 0.04 0.32 8.14 -51.92 -0.42 -0.10 16 26 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.05 0.43 6.50 -51.93 -0.34 0.09 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.35 5.30 5.54 -39.30 -0.22 5.08 16 31 H 0.06 0.93 7.58 -51.93 -0.39 0.54 16 32 H 0.05 0.75 7.38 -51.93 -0.38 0.37 16 33 H 0.07 1.53 7.83 -51.93 -0.41 1.12 16 34 H 0.04 0.83 5.87 -51.93 -0.30 0.53 16 35 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 36 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.06 1.39 8.05 -51.93 -0.42 0.97 16 38 H 0.07 0.92 5.88 -51.93 -0.31 0.61 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.05 0.50 6.46 -51.93 -0.34 0.16 16 41 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.73 5.85 -51.93 -0.30 0.42 16 43 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.08 0.94 5.68 -51.93 -0.30 0.65 16 LS Contribution 321.76 15.07 4.85 4.85 Total: -1.00 -29.89 321.76 -6.92 -36.81 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -7.83 Total: 2.66 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: 0.32 Total: -20.02 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.18 Total: -37.87 kcal Atomic # 8 Polarization: -4.18 SS G_CDS: -0.23 Total: -4.41 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.21 Total: 17.97 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.89 -6.92 -36.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378724398.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.785 kcal (2) G-P(sol) polarization free energy of solvation -29.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds