Wall clock time and date at job start Mon Mar 30 2020 06:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 114.00051 * 2 1 4 4 C 1.52997 * 109.47086 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46751 * 181.39696 * 4 3 2 6 6 N 1.46909 * 109.46814 * 61.40327 * 4 3 2 7 7 C 1.46896 * 110.99692 * 154.99662 * 6 4 3 8 8 H 1.09004 * 110.43700 * 323.91532 * 7 6 4 9 9 C 1.54268 * 110.48711 * 86.45034 * 7 6 4 10 10 C 1.53873 * 106.59835 * 142.41558 * 9 7 6 11 11 C 1.54265 * 106.59931 * 0.02562 * 10 9 7 12 12 H 1.08998 * 110.48877 * 95.19840 * 11 10 9 13 13 C 1.50703 * 110.48699 * 217.70869 * 11 10 9 14 14 H 1.07993 * 120.00021 * 116.75960 * 13 11 10 15 15 C 1.37881 * 119.99967 * 297.03123 * 13 11 10 16 16 N 1.31512 * 119.99970 * 179.72377 * 15 13 11 17 17 Si 1.86801 * 119.99874 * 359.72752 * 15 13 11 18 18 H 1.48498 * 109.47213 * 89.99787 * 17 15 13 19 19 H 1.48505 * 109.47010 * 209.99828 * 17 15 13 20 20 H 1.48504 * 109.47018 * 329.99594 * 17 15 13 21 21 C 1.54885 * 104.31224 * 336.45425 * 11 10 9 22 22 C 1.52991 * 109.47321 * 301.40338 * 4 3 2 23 23 C 1.53000 * 109.47027 * 300.20642 * 22 4 3 24 24 C 1.52996 * 109.47390 * 60.20582 * 22 4 3 25 25 H 1.09008 * 109.46736 * 60.00057 * 1 2 3 26 26 H 1.08998 * 109.47485 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47246 * 300.00526 * 1 2 3 28 28 H 1.09000 * 109.46873 * 59.99427 * 3 2 1 29 29 H 1.09004 * 109.46854 * 300.00157 * 3 2 1 30 30 H 1.00893 * 110.99968 * 278.94852 * 6 4 3 31 31 H 1.09001 * 110.03013 * 23.13938 * 9 7 6 32 32 H 1.08996 * 110.07807 * 261.72497 * 9 7 6 33 33 H 1.09001 * 110.03476 * 240.72037 * 10 9 7 34 34 H 1.09003 * 110.07233 * 119.31167 * 10 9 7 35 35 H 0.96993 * 119.99805 * 180.02562 * 16 15 13 36 36 H 1.08997 * 110.75792 * 156.19391 * 21 11 10 37 37 H 1.09007 * 110.75523 * 279.56124 * 21 11 10 38 38 H 1.09003 * 109.47040 * 180.20629 * 22 4 3 39 39 H 1.09003 * 109.47330 * 299.99945 * 23 22 4 40 40 H 1.08996 * 109.47560 * 60.00139 * 23 22 4 41 41 H 1.09002 * 109.47303 * 180.02562 * 23 22 4 42 42 H 1.09004 * 109.46910 * 49.08091 * 24 22 4 43 43 H 1.08999 * 109.47297 * 169.07615 * 24 22 4 44 44 H 1.09001 * 109.47216 * 289.08268 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9787 2.1802 0.0257 6 7 3.9717 0.4849 -1.2152 7 6 5.3520 0.8466 -1.5641 8 1 5.5405 1.8952 -1.3336 9 6 6.3528 -0.0587 -0.8168 10 6 7.5076 -0.3383 -1.7946 11 6 7.1685 0.4075 -3.1018 12 1 7.6524 1.3839 -3.1205 13 6 7.5849 -0.4090 -4.2980 14 1 6.8404 -0.7633 -4.9956 15 6 8.9157 -0.7085 -4.4989 16 7 9.2784 -1.4257 -5.5399 17 14 10.2034 -0.0957 -3.2923 18 1 10.3950 -1.1035 -2.2186 19 1 11.4882 0.1180 -4.0057 20 1 9.7506 1.1856 -2.6935 21 6 5.6283 0.5664 -3.0634 22 6 3.9840 0.3954 1.2321 23 6 3.5252 1.1215 2.4982 24 6 3.3659 -1.0037 1.1942 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.6885 1.8464 0.8899 29 1 1.6886 1.8464 -0.8900 30 1 3.8748 -0.5141 -1.1119 31 1 5.8700 -0.9936 -0.5322 32 1 6.7294 0.4517 0.0696 33 1 7.5852 -1.4088 -1.9845 34 1 8.4449 0.0367 -1.3835 35 1 10.2146 -1.6367 -5.6810 36 1 5.3112 1.4070 -3.6807 37 1 5.1370 -0.3537 -3.3800 38 1 5.0709 0.3125 1.2344 39 1 3.9655 2.1183 2.5253 40 1 2.4384 1.2044 2.4959 41 1 3.8451 0.5594 3.3756 42 1 3.5304 -1.4471 0.2121 43 1 3.8317 -1.6275 1.9571 44 1 2.2953 -0.9332 1.3863 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378724398.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:22 Heat of formation + Delta-G solvation = -77.135547 kcal Electronic energy + Delta-G solvation = -20337.463197 eV Core-core repulsion = 17481.473904 eV Total energy + Delta-G solvation = -2855.989293 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.47728 -38.85281 -36.92582 -34.73246 -33.30884 -30.47989 -29.66980 -28.46744 -27.82566 -26.50513 -24.97911 -23.88793 -21.35822 -20.92818 -20.23495 -18.69206 -17.72450 -17.25543 -16.76453 -16.36477 -15.99865 -15.50469 -15.34939 -14.88469 -14.79214 -14.39818 -14.09682 -13.85218 -13.47597 -13.23158 -13.00151 -12.88323 -12.78784 -12.64876 -12.55942 -12.20702 -12.02780 -11.92114 -11.69515 -11.54369 -11.52073 -11.39843 -11.21714 -10.98416 -10.86583 -10.69485 -10.24068 -9.12399 -8.27581 -6.30226 1.32747 1.35505 1.46296 2.35438 3.04097 3.07753 3.29553 3.90442 3.92422 3.99758 4.07722 4.17205 4.26374 4.46337 4.55438 4.59971 4.64188 4.68418 4.69436 4.74331 4.80889 4.89030 4.91587 4.93641 4.96139 5.02213 5.06861 5.08451 5.17934 5.20676 5.23561 5.34248 5.38459 5.52707 5.53220 5.66684 5.73493 5.83876 6.25457 6.36273 6.46373 6.61190 6.77091 7.34910 8.89841 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.034796 B = 0.004948 C = 0.004624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.501713 B = 5657.062100 C = 6054.491763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.389 6.389 3 C 0.073 3.927 4 C 0.091 3.909 5 H 0.093 0.907 6 N -0.678 5.678 7 C 0.095 3.905 8 H 0.087 0.913 9 C -0.134 4.134 10 C -0.128 4.128 11 C 0.004 3.996 12 H 0.030 0.970 13 C -0.513 4.513 14 H 0.028 0.972 15 C 0.010 3.990 16 N -0.955 5.955 17 Si 0.945 3.055 18 H -0.267 1.267 19 H -0.295 1.295 20 H -0.243 1.243 21 C -0.086 4.086 22 C -0.124 4.124 23 C -0.139 4.139 24 C -0.141 4.141 25 H 0.038 0.962 26 H 0.088 0.912 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.045 0.955 30 H 0.345 0.655 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.041 0.959 34 H 0.043 0.957 35 H 0.264 0.736 36 H 0.054 0.946 37 H 0.044 0.956 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.054 0.946 42 H 0.038 0.962 43 H 0.041 0.959 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.229 6.834 18.851 25.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.308 6.308 3 C -0.003 4.003 4 C -0.019 4.019 5 H 0.111 0.889 6 N -0.310 5.310 7 C -0.016 4.016 8 H 0.105 0.895 9 C -0.173 4.173 10 C -0.166 4.166 11 C -0.015 4.015 12 H 0.048 0.952 13 C -0.551 4.551 14 H 0.047 0.953 15 C -0.187 4.187 16 N -0.596 5.596 17 Si 0.770 3.230 18 H -0.193 1.193 19 H -0.222 1.222 20 H -0.167 1.167 21 C -0.124 4.124 22 C -0.144 4.144 23 C -0.197 4.197 24 C -0.199 4.199 25 H 0.057 0.943 26 H 0.106 0.894 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.064 0.936 30 H 0.167 0.833 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.293 7.049 18.326 24.888 hybrid contribution 1.300 -0.586 0.283 1.454 sum -13.993 6.462 18.610 24.163 Atomic orbital electron populations 1.22828 0.81215 1.03092 1.00253 1.88077 1.19901 1.27842 1.95012 1.22622 0.92482 0.84996 1.00239 1.21834 0.94009 0.98068 0.87980 0.88924 1.60691 1.21271 1.13758 1.35259 1.22417 0.86461 0.98556 0.94122 0.89478 1.22833 0.96786 0.99829 0.97880 1.22442 0.97568 1.00004 0.96582 1.19940 0.94514 0.94911 0.92135 0.95228 1.21391 0.92704 1.32263 1.08705 0.95340 1.25902 1.00928 0.94818 0.97020 1.70069 1.17606 1.40969 1.30974 0.85858 0.77593 0.80557 0.78984 1.19270 1.22152 1.16697 1.22257 0.94894 0.99839 0.95446 1.21803 1.00069 0.96539 0.95992 1.21803 1.01601 1.00024 0.96270 1.21972 1.02688 0.95201 0.99995 0.94347 0.89377 0.93128 0.91326 0.93625 0.83262 0.91994 0.90914 0.93979 0.93799 0.92703 0.92753 0.93740 0.91947 0.92270 0.91925 0.92714 0.94289 0.94016 0.89656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 11.01 113.37 1.25 1.58 16 2 O -0.39 -7.95 6.67 -148.98 -0.99 -8.94 16 3 C 0.07 1.39 5.34 71.98 0.38 1.77 16 4 C 0.09 1.94 2.40 44.91 0.11 2.05 16 5 H 0.09 1.86 7.47 -2.39 -0.02 1.84 16 6 N -0.68 -18.73 6.03 -463.78 -2.80 -21.53 16 7 C 0.09 2.97 3.15 46.03 0.14 3.11 16 8 H 0.09 2.51 7.51 -2.39 -0.02 2.50 16 9 C -0.13 -4.30 4.88 31.32 0.15 -4.15 16 10 C -0.13 -5.33 4.75 31.32 0.15 -5.18 16 11 C 0.00 0.20 2.28 -10.47 -0.02 0.18 16 12 H 0.03 1.39 7.20 -2.39 -0.02 1.38 16 13 C -0.51 -30.18 8.97 25.60 0.23 -29.95 16 14 H 0.03 1.87 8.02 -2.91 -0.02 1.84 16 15 C 0.01 0.57 5.46 84.66 0.46 1.03 16 16 N -0.96 -61.48 13.96 21.45 0.30 -61.18 16 17 Si 0.94 45.61 24.75 68.60 1.70 47.30 16 18 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 19 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 20 H -0.24 -10.79 6.40 99.48 0.64 -10.16 16 21 C -0.09 -3.48 5.99 31.92 0.19 -3.29 16 22 C -0.12 -2.46 2.61 -10.80 -0.03 -2.48 16 23 C -0.14 -2.15 8.81 71.98 0.63 -1.52 16 24 C -0.14 -3.01 7.84 71.98 0.56 -2.44 16 25 H 0.04 0.57 8.14 -2.38 -0.02 0.55 16 26 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.07 1.01 6.50 -2.39 -0.02 0.99 16 29 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.34 10.09 5.54 -89.70 -0.50 9.59 16 31 H 0.06 1.93 7.58 -2.39 -0.02 1.91 16 32 H 0.07 2.01 7.38 -2.39 -0.02 2.00 16 33 H 0.04 1.93 7.83 -2.39 -0.02 1.91 16 34 H 0.04 1.77 5.87 -2.39 -0.01 1.75 16 35 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 36 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.04 1.95 8.05 -2.38 -0.02 1.93 16 38 H 0.06 1.37 5.88 -2.39 -0.01 1.36 16 39 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.06 0.88 6.46 -2.39 -0.02 0.87 16 41 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.04 0.96 5.85 -2.38 -0.01 0.94 16 43 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.08 1.76 5.68 -2.39 -0.01 1.75 16 Total: -1.00 -66.23 321.76 2.82 -63.41 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 0.39 Total: 20.23 kcal Atomic # 6 Polarization: -43.51 SS G_CDS: 4.22 Total: -39.30 kcal Atomic # 7 Polarization: -80.21 SS G_CDS: -2.50 Total: -82.70 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: -0.99 Total: -8.94 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.70 Total: 47.30 kcal Total: -66.23 2.82 -63.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378724398.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.723 kcal (2) G-P(sol) polarization free energy of solvation -66.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds