Wall clock time and date at job start Mon Mar 30 2020 06:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00040 * 2 1 4 4 C 1.53006 * 109.47239 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47152 * 185.00314 * 4 3 2 6 6 N 1.46901 * 109.46987 * 65.00166 * 4 3 2 7 7 C 1.46894 * 110.99965 * 134.17037 * 6 4 3 8 8 H 1.08997 * 110.43568 * 36.93008 * 7 6 4 9 9 C 1.54266 * 110.48760 * 274.38710 * 7 6 4 10 10 C 1.53879 * 106.60027 * 217.70979 * 9 7 6 11 11 C 1.54262 * 106.59659 * 0.02562 * 10 9 7 12 12 H 1.09002 * 110.48812 * 264.93172 * 11 10 9 13 13 C 1.50707 * 110.48625 * 142.41582 * 11 10 9 14 14 H 1.07995 * 120.00160 * 241.45270 * 13 11 10 15 15 C 1.37875 * 119.99672 * 61.45443 * 13 11 10 16 16 N 1.31524 * 119.99899 * 359.97438 * 15 13 11 17 17 Si 1.86793 * 120.00048 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47258 * 90.00043 * 17 15 13 19 19 H 1.48501 * 109.47114 * 209.99890 * 17 15 13 20 20 H 1.48504 * 109.46995 * 329.99744 * 17 15 13 21 21 C 1.54886 * 110.48816 * 159.61086 * 7 6 4 22 22 C 1.52999 * 109.47002 * 305.00218 * 4 3 2 23 23 C 1.52997 * 109.47190 * 177.79667 * 22 4 3 24 24 C 1.52996 * 109.47221 * 297.79666 * 22 4 3 25 25 H 1.09006 * 109.47094 * 300.00054 * 1 2 3 26 26 H 1.09002 * 109.47438 * 59.99423 * 1 2 3 27 27 H 1.08999 * 109.47394 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46873 * 60.00331 * 3 2 1 29 29 H 1.09001 * 109.47545 * 300.00519 * 3 2 1 30 30 H 1.00904 * 110.99714 * 258.12451 * 6 4 3 31 31 H 1.09004 * 110.03002 * 336.99877 * 9 7 6 32 32 H 1.09003 * 110.03232 * 98.38012 * 9 7 6 33 33 H 1.08997 * 110.02773 * 119.28494 * 10 9 7 34 34 H 1.08992 * 110.03299 * 240.71660 * 10 9 7 35 35 H 0.97000 * 119.99579 * 179.97438 * 16 15 13 36 36 H 1.09000 * 110.76339 * 274.94091 * 21 7 6 37 37 H 1.09008 * 110.75292 * 38.30775 * 21 7 6 38 38 H 1.09003 * 109.47194 * 57.79466 * 22 4 3 39 39 H 1.09001 * 109.47098 * 65.51009 * 23 22 4 40 40 H 1.09005 * 109.46999 * 305.51306 * 23 22 4 41 41 H 1.09002 * 109.47151 * 185.51720 * 23 22 4 42 42 H 1.09002 * 109.47390 * 299.99903 * 24 22 4 43 43 H 1.08997 * 109.47415 * 59.99654 * 24 22 4 44 44 H 1.09004 * 109.47647 * 180.02562 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.9785 2.1765 0.0890 6 7 3.9769 0.5628 -1.2562 7 6 5.1141 1.2917 -1.8334 8 1 5.7767 1.6490 -1.0451 9 6 4.6181 2.4699 -2.6969 10 6 5.5596 2.5518 -3.9113 11 6 6.5945 1.4201 -3.7436 12 1 7.4983 1.7974 -3.2651 13 6 6.9240 0.8045 -5.0792 14 1 6.7165 -0.2401 -5.2582 15 6 7.4903 1.5750 -6.0724 16 7 7.7425 2.8473 -5.8545 17 14 7.8980 0.8122 -7.7281 18 1 6.7298 0.9444 -8.6352 19 1 9.0665 1.5112 -8.3208 20 1 8.2220 -0.6253 -7.5444 21 6 5.8871 0.3906 -2.8281 22 6 3.9790 0.3193 1.1806 23 6 5.4996 0.1531 1.1485 24 6 3.5674 0.9945 2.4904 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8465 -0.8899 30 1 4.2041 -0.4105 -1.1173 31 1 3.5962 2.2855 -3.0284 32 1 4.6634 3.3969 -2.1253 33 1 4.9946 2.4072 -4.8321 34 1 6.0626 3.5185 -3.9292 35 1 8.1413 3.3892 -6.5532 36 1 6.6170 -0.2262 -2.3039 37 1 5.1987 -0.2285 -3.4035 38 1 3.5049 -0.6598 1.1120 39 1 5.9744 1.1200 1.3152 40 1 5.8020 -0.2374 0.1767 41 1 5.8058 -0.5417 1.9305 42 1 4.0414 1.9737 2.5591 43 1 2.4841 1.1130 2.5133 44 1 3.8838 0.3783 3.3320 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378724399.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:25 Heat of formation + Delta-G solvation = -72.291305 kcal Electronic energy + Delta-G solvation = -20075.162590 eV Core-core repulsion = 17219.383359 eV Total energy + Delta-G solvation = -2855.779231 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.04021 -37.31788 -35.93074 -32.97910 -31.52278 -29.26254 -28.02268 -26.97750 -26.44193 -25.32438 -23.60861 -22.42906 -20.09114 -19.11597 -18.79067 -16.47720 -16.04430 -15.93369 -15.46318 -15.11549 -14.76597 -14.52677 -14.12204 -13.76503 -13.19905 -12.70250 -12.47862 -12.31709 -12.25844 -12.11341 -11.93390 -11.52842 -11.44197 -11.09241 -10.98343 -10.74386 -10.70525 -10.48594 -10.40684 -10.22065 -9.99280 -9.83436 -9.50347 -9.41132 -9.01294 -8.62832 -8.30408 -7.90579 -5.93672 -3.95789 3.35312 3.41754 3.45191 3.91156 4.46437 4.53132 4.76767 4.92698 5.06783 5.23488 5.32861 5.38417 5.48069 5.50977 5.55631 5.61005 5.61830 5.66800 5.72066 5.79251 5.85830 5.90537 5.95725 6.06437 6.15034 6.26457 6.37922 6.45021 6.63734 6.73547 6.88911 6.95389 7.08803 7.22017 7.33201 7.45498 7.68229 7.79990 7.89043 8.01689 8.11018 8.55067 9.07036 9.67760 11.16008 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.030786 B = 0.004557 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.271493 B = 6143.210498 C = 6473.150948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.379 6.379 3 C 0.075 3.925 4 C 0.094 3.906 5 H 0.080 0.920 6 N -0.671 5.671 7 C 0.079 3.921 8 H 0.039 0.961 9 C -0.115 4.115 10 C -0.093 4.093 11 C 0.051 3.949 12 H 0.025 0.975 13 C -0.511 4.511 14 H 0.054 0.946 15 C 0.061 3.939 16 N -0.891 5.891 17 Si 0.888 3.112 18 H -0.281 1.281 19 H -0.288 1.288 20 H -0.275 1.275 21 C -0.115 4.115 22 C -0.115 4.115 23 C -0.154 4.154 24 C -0.143 4.143 25 H 0.033 0.967 26 H 0.039 0.961 27 H 0.080 0.920 28 H 0.043 0.957 29 H 0.053 0.947 30 H 0.341 0.659 31 H 0.058 0.942 32 H 0.036 0.964 33 H 0.050 0.950 34 H 0.051 0.949 35 H 0.258 0.742 36 H 0.042 0.958 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.053 0.947 42 H 0.051 0.949 43 H 0.054 0.946 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.669 -2.619 14.855 18.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.297 6.297 3 C -0.003 4.003 4 C -0.016 4.016 5 H 0.098 0.902 6 N -0.302 5.302 7 C -0.030 4.030 8 H 0.057 0.943 9 C -0.153 4.153 10 C -0.132 4.132 11 C 0.032 3.968 12 H 0.043 0.957 13 C -0.549 4.549 14 H 0.073 0.927 15 C -0.140 4.140 16 N -0.530 5.530 17 Si 0.716 3.284 18 H -0.208 1.208 19 H -0.214 1.214 20 H -0.200 1.200 21 C -0.153 4.153 22 C -0.135 4.135 23 C -0.211 4.211 24 C -0.201 4.201 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.099 0.901 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.161 0.839 31 H 0.077 0.923 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.941 -2.295 14.366 18.203 hybrid contribution 0.702 -0.244 -0.358 0.825 sum -10.239 -2.538 14.007 17.535 Atomic orbital electron populations 1.22667 0.82108 1.02201 0.99445 1.87900 1.18593 1.27982 1.95233 1.22667 0.93750 0.84582 0.99275 1.21693 0.92976 0.98111 0.88849 0.90227 1.60600 1.38309 1.06237 1.25029 1.22597 0.89502 0.95453 0.95482 0.94270 1.22296 1.00198 0.95279 0.97572 1.22016 0.96189 1.00378 0.94592 1.19371 0.93067 0.90751 0.93608 0.95709 1.21173 1.40236 0.96020 0.97476 0.92727 1.24973 0.95660 0.94878 0.98488 1.69986 1.43740 1.05884 1.33351 0.86661 0.77856 0.79356 0.84512 1.20766 1.21378 1.19984 1.22713 0.97741 0.98165 0.96662 1.21652 0.96022 1.00627 0.95180 1.21951 0.95381 1.01649 1.02112 1.21820 1.01115 1.00280 0.96854 0.94843 0.94285 0.90124 0.93935 0.92903 0.83936 0.92323 0.94492 0.93111 0.92995 0.93223 0.93968 0.91654 0.89994 0.92822 0.92130 0.92839 0.92992 0.92664 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.38 -4.91 9.73 -35.23 -0.34 -5.25 16 3 C 0.07 0.92 5.33 37.16 0.20 1.12 16 4 C 0.09 1.24 2.05 -67.71 -0.14 1.10 16 5 H 0.08 1.08 7.49 -51.93 -0.39 0.69 16 6 N -0.67 -10.45 5.80 -98.01 -0.57 -11.02 16 7 C 0.08 1.41 2.05 -66.06 -0.14 1.28 16 8 H 0.04 0.70 6.90 -51.93 -0.36 0.34 16 9 C -0.12 -2.26 6.46 -25.61 -0.17 -2.42 16 10 C -0.09 -2.23 5.40 -25.61 -0.14 -2.37 16 11 C 0.05 1.28 2.78 -90.12 -0.25 1.03 16 12 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 13 C -0.51 -14.26 8.41 -34.44 -0.29 -14.55 16 14 H 0.05 1.51 7.78 -52.49 -0.41 1.10 16 15 C 0.06 1.73 5.33 -17.82 -0.09 1.63 16 16 N -0.89 -26.01 12.35 55.43 0.68 -25.32 16 17 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 21 C -0.11 -2.39 5.71 -24.75 -0.14 -2.53 16 22 C -0.12 -1.33 2.15 -90.62 -0.19 -1.53 16 23 C -0.15 -1.82 8.24 37.16 0.31 -1.51 16 24 C -0.14 -1.41 8.89 37.16 0.33 -1.08 16 25 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.04 0.45 6.75 -51.93 -0.35 0.10 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.34 5.25 7.13 -39.29 -0.28 4.97 16 31 H 0.06 1.15 8.04 -51.93 -0.42 0.73 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 1.31 7.83 -51.93 -0.41 0.90 16 34 H 0.05 1.32 7.93 -51.93 -0.41 0.91 16 35 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 1.41 8.05 -51.92 -0.42 0.99 16 38 H 0.08 1.02 7.48 -51.93 -0.39 0.63 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.80 6.08 -51.93 -0.32 0.48 16 41 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.05 0.53 6.60 -51.93 -0.34 0.18 16 44 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 338.47 15.07 5.10 5.10 Total: -1.00 -28.79 338.47 -8.02 -36.81 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -8.27 Total: 1.45 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: 0.40 Total: -18.40 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: 0.12 Total: -36.34 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: -0.34 Total: -5.25 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.79 -8.02 -36.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378724399.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.484 kcal (2) G-P(sol) polarization free energy of solvation -28.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds