Wall clock time and date at job start Mon Mar 30 2020 06:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00040 * 2 1 4 4 C 1.53006 * 109.47239 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47152 * 185.00314 * 4 3 2 6 6 N 1.46901 * 109.46987 * 65.00166 * 4 3 2 7 7 C 1.46894 * 110.99965 * 134.17037 * 6 4 3 8 8 H 1.08997 * 110.43568 * 36.93008 * 7 6 4 9 9 C 1.54266 * 110.48760 * 274.38710 * 7 6 4 10 10 C 1.53879 * 106.60027 * 217.70979 * 9 7 6 11 11 C 1.54262 * 106.59659 * 0.02562 * 10 9 7 12 12 H 1.09002 * 110.48812 * 264.93172 * 11 10 9 13 13 C 1.50707 * 110.48625 * 142.41582 * 11 10 9 14 14 H 1.07995 * 120.00160 * 241.45270 * 13 11 10 15 15 C 1.37875 * 119.99672 * 61.45443 * 13 11 10 16 16 N 1.31524 * 119.99899 * 359.97438 * 15 13 11 17 17 Si 1.86793 * 120.00048 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47258 * 90.00043 * 17 15 13 19 19 H 1.48501 * 109.47114 * 209.99890 * 17 15 13 20 20 H 1.48504 * 109.46995 * 329.99744 * 17 15 13 21 21 C 1.54886 * 110.48816 * 159.61086 * 7 6 4 22 22 C 1.52999 * 109.47002 * 305.00218 * 4 3 2 23 23 C 1.52997 * 109.47190 * 177.79667 * 22 4 3 24 24 C 1.52996 * 109.47221 * 297.79666 * 22 4 3 25 25 H 1.09006 * 109.47094 * 300.00054 * 1 2 3 26 26 H 1.09002 * 109.47438 * 59.99423 * 1 2 3 27 27 H 1.08999 * 109.47394 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46873 * 60.00331 * 3 2 1 29 29 H 1.09001 * 109.47545 * 300.00519 * 3 2 1 30 30 H 1.00904 * 110.99714 * 258.12451 * 6 4 3 31 31 H 1.09004 * 110.03002 * 336.99877 * 9 7 6 32 32 H 1.09003 * 110.03232 * 98.38012 * 9 7 6 33 33 H 1.08997 * 110.02773 * 119.28494 * 10 9 7 34 34 H 1.08992 * 110.03299 * 240.71660 * 10 9 7 35 35 H 0.97000 * 119.99579 * 179.97438 * 16 15 13 36 36 H 1.09000 * 110.76339 * 274.94091 * 21 7 6 37 37 H 1.09008 * 110.75292 * 38.30775 * 21 7 6 38 38 H 1.09003 * 109.47194 * 57.79466 * 22 4 3 39 39 H 1.09001 * 109.47098 * 65.51009 * 23 22 4 40 40 H 1.09005 * 109.46999 * 305.51306 * 23 22 4 41 41 H 1.09002 * 109.47151 * 185.51720 * 23 22 4 42 42 H 1.09002 * 109.47390 * 299.99903 * 24 22 4 43 43 H 1.08997 * 109.47415 * 59.99654 * 24 22 4 44 44 H 1.09004 * 109.47647 * 180.02562 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.9785 2.1765 0.0890 6 7 3.9769 0.5628 -1.2562 7 6 5.1141 1.2917 -1.8334 8 1 5.7767 1.6490 -1.0451 9 6 4.6181 2.4699 -2.6969 10 6 5.5596 2.5518 -3.9113 11 6 6.5945 1.4201 -3.7436 12 1 7.4983 1.7974 -3.2651 13 6 6.9240 0.8045 -5.0792 14 1 6.7165 -0.2401 -5.2582 15 6 7.4903 1.5750 -6.0724 16 7 7.7425 2.8473 -5.8545 17 14 7.8980 0.8122 -7.7281 18 1 6.7298 0.9444 -8.6352 19 1 9.0665 1.5112 -8.3208 20 1 8.2220 -0.6253 -7.5444 21 6 5.8871 0.3906 -2.8281 22 6 3.9790 0.3193 1.1806 23 6 5.4996 0.1531 1.1485 24 6 3.5674 0.9945 2.4904 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8465 -0.8899 30 1 4.2041 -0.4105 -1.1173 31 1 3.5962 2.2855 -3.0284 32 1 4.6634 3.3969 -2.1253 33 1 4.9946 2.4072 -4.8321 34 1 6.0626 3.5185 -3.9292 35 1 8.1413 3.3892 -6.5532 36 1 6.6170 -0.2262 -2.3039 37 1 5.1987 -0.2285 -3.4035 38 1 3.5049 -0.6598 1.1120 39 1 5.9744 1.1200 1.3152 40 1 5.8020 -0.2374 0.1767 41 1 5.8058 -0.5417 1.9305 42 1 4.0414 1.9737 2.5591 43 1 2.4841 1.1130 2.5133 44 1 3.8838 0.3783 3.3320 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378724399.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:25 Heat of formation + Delta-G solvation = -89.535343 kcal Electronic energy + Delta-G solvation = -20075.910347 eV Core-core repulsion = 17219.383359 eV Total energy + Delta-G solvation = -2856.526989 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.20887 -38.66074 -37.12694 -34.75167 -33.07276 -30.36516 -29.87620 -28.12477 -27.52355 -26.51973 -25.46198 -23.47657 -21.46495 -20.65328 -20.39807 -18.31222 -17.22700 -16.95688 -16.65045 -16.55171 -16.30860 -15.86094 -15.52047 -14.97418 -14.37787 -14.11720 -13.88431 -13.78266 -13.58625 -13.08684 -13.01113 -12.95191 -12.79479 -12.64886 -12.36052 -12.29543 -12.09482 -11.93707 -11.67739 -11.60686 -11.49315 -11.41161 -11.28093 -10.88622 -10.71182 -10.45703 -10.39244 -9.16458 -8.10341 -6.19768 1.41247 1.41769 1.52141 2.44619 3.04298 3.20470 3.27463 3.81867 3.98023 4.03779 4.14003 4.18776 4.36501 4.46940 4.54791 4.59853 4.64989 4.68790 4.72997 4.76201 4.83024 4.90853 4.92528 4.94555 4.98996 5.03503 5.07029 5.14842 5.18464 5.27007 5.29350 5.44256 5.46075 5.48989 5.57244 5.69660 5.93955 6.01454 6.27946 6.41931 6.47570 6.62146 6.91396 7.47426 8.98672 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.030786 B = 0.004557 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.271493 B = 6143.210498 C = 6473.150948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.399 6.399 3 C 0.077 3.923 4 C 0.092 3.908 5 H 0.078 0.922 6 N -0.673 5.673 7 C 0.098 3.902 8 H 0.047 0.953 9 C -0.105 4.105 10 C -0.083 4.083 11 C 0.040 3.960 12 H -0.003 1.003 13 C -0.532 4.532 14 H 0.051 0.949 15 C 0.011 3.989 16 N -0.920 5.920 17 Si 0.952 3.048 18 H -0.277 1.277 19 H -0.283 1.283 20 H -0.268 1.268 21 C -0.104 4.104 22 C -0.107 4.107 23 C -0.152 4.152 24 C -0.139 4.139 25 H 0.050 0.950 26 H 0.037 0.963 27 H 0.091 0.909 28 H 0.065 0.935 29 H 0.040 0.960 30 H 0.344 0.656 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.023 0.977 34 H 0.027 0.973 35 H 0.259 0.741 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.075 0.925 39 H 0.051 0.949 40 H 0.043 0.957 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.060 0.940 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.693 -3.266 16.130 20.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.318 6.318 3 C 0.000 4.000 4 C -0.018 4.018 5 H 0.097 0.903 6 N -0.304 5.304 7 C -0.012 4.012 8 H 0.064 0.936 9 C -0.143 4.143 10 C -0.122 4.122 11 C 0.022 3.978 12 H 0.015 0.985 13 C -0.570 4.570 14 H 0.070 0.930 15 C -0.187 4.187 16 N -0.560 5.560 17 Si 0.778 3.222 18 H -0.202 1.202 19 H -0.209 1.209 20 H -0.192 1.192 21 C -0.142 4.142 22 C -0.127 4.127 23 C -0.210 4.210 24 C -0.197 4.197 25 H 0.069 0.931 26 H 0.056 0.944 27 H 0.110 0.890 28 H 0.083 0.917 29 H 0.058 0.942 30 H 0.164 0.836 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.042 0.958 34 H 0.046 0.954 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.979 -2.953 15.656 19.933 hybrid contribution 1.005 -0.048 -0.740 1.249 sum -10.974 -3.001 14.916 18.759 Atomic orbital electron populations 1.22829 0.80594 1.03245 1.00200 1.87865 1.20312 1.28215 1.95386 1.22616 0.92985 0.84643 0.99745 1.21781 0.93701 0.98084 0.88213 0.90347 1.60529 1.36767 1.06286 1.26865 1.22277 0.89988 0.94123 0.94801 0.93558 1.22166 0.98993 0.97048 0.96084 1.21803 0.96265 0.98626 0.95513 1.19375 0.92685 0.92352 0.93431 0.98504 1.21548 1.40401 0.96073 0.98946 0.93031 1.25759 0.95563 0.95319 1.02092 1.70110 1.44359 1.07063 1.34445 0.85642 0.77708 0.78768 0.80073 1.20246 1.20886 1.19200 1.22526 0.97706 0.97460 0.96516 1.21548 0.95615 1.00059 0.95442 1.21936 0.95615 1.01787 1.01623 1.21784 1.01487 1.00439 0.95953 0.93132 0.94445 0.89036 0.91721 0.94155 0.83644 0.92039 0.92678 0.95807 0.95364 0.93194 0.92988 0.92485 0.90706 0.92962 0.93757 0.91591 0.92582 0.92135 0.92046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 113.37 1.25 1.73 16 2 O -0.40 -9.51 9.73 -148.98 -1.45 -10.96 16 3 C 0.08 1.74 5.33 71.98 0.38 2.13 16 4 C 0.09 2.24 2.05 44.92 0.09 2.33 16 5 H 0.08 1.94 7.49 -2.39 -0.02 1.93 16 6 N -0.67 -20.04 5.80 -464.00 -2.69 -22.74 16 7 C 0.10 3.42 2.05 45.99 0.09 3.51 16 8 H 0.05 1.58 6.90 -2.39 -0.02 1.56 16 9 C -0.10 -4.05 6.46 31.32 0.20 -3.84 16 10 C -0.08 -4.11 5.40 31.32 0.17 -3.94 16 11 C 0.04 2.09 2.78 -10.47 -0.03 2.07 16 12 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 13 C -0.53 -30.29 8.41 25.60 0.22 -30.07 16 14 H 0.05 2.89 7.78 -2.91 -0.02 2.87 16 15 C 0.01 0.64 5.33 84.65 0.45 1.09 16 16 N -0.92 -54.97 12.35 21.45 0.26 -54.70 16 17 Si 0.95 44.81 29.54 68.60 2.03 46.84 16 18 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 19 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 21 C -0.10 -4.34 5.71 31.88 0.18 -4.16 16 22 C -0.11 -2.24 2.15 -10.80 -0.02 -2.26 16 23 C -0.15 -3.31 8.24 71.98 0.59 -2.72 16 24 C -0.14 -2.33 8.89 71.98 0.64 -1.69 16 25 H 0.05 0.70 8.14 -2.38 -0.02 0.69 16 26 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.06 1.17 6.75 -2.39 -0.02 1.16 16 29 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.34 10.11 7.13 -89.69 -0.64 9.47 16 31 H 0.06 2.35 8.04 -2.39 -0.02 2.33 16 32 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.02 1.25 7.83 -2.39 -0.02 1.23 16 34 H 0.03 1.47 7.93 -2.39 -0.02 1.45 16 35 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 36 H 0.05 2.03 8.14 -2.39 -0.02 2.02 16 37 H 0.06 2.46 8.05 -2.38 -0.02 2.44 16 38 H 0.07 1.71 7.48 -2.39 -0.02 1.69 16 39 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.04 1.10 6.08 -2.38 -0.01 1.09 16 41 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 42 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 43 H 0.06 0.96 6.60 -2.39 -0.02 0.94 16 44 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -62.22 338.47 2.67 -59.55 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.30 Total: 17.83 kcal Atomic # 6 Polarization: -40.05 SS G_CDS: 4.22 Total: -35.83 kcal Atomic # 7 Polarization: -75.01 SS G_CDS: -2.43 Total: -77.44 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: -1.45 Total: -10.96 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -62.22 2.67 -59.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378724399.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.982 kcal (2) G-P(sol) polarization free energy of solvation -62.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds