Wall clock time and date at job start Mon Mar 30 2020 06:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 114.00176 * 2 1 4 4 C 1.53002 * 109.47267 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47134 * 185.43289 * 4 3 2 6 6 N 1.46894 * 109.47325 * 65.42662 * 4 3 2 7 7 C 1.46901 * 111.00163 * 137.78395 * 6 4 3 8 8 H 1.09000 * 110.43152 * 21.54022 * 7 6 4 9 9 C 1.54891 * 110.49065 * 258.86145 * 7 6 4 10 10 C 1.54883 * 102.74764 * 203.37867 * 9 7 6 11 11 C 1.54264 * 104.20039 * 37.93801 * 10 9 7 12 12 H 1.09004 * 110.07558 * 95.69504 * 11 10 9 13 13 C 1.50696 * 110.03342 * 217.10519 * 11 10 9 14 14 H 1.07999 * 119.99895 * 91.69261 * 13 11 10 15 15 C 1.37881 * 119.99995 * 271.69158 * 13 11 10 16 16 N 1.31515 * 119.99672 * 174.81587 * 15 13 11 17 17 Si 1.86788 * 120.00098 * 355.08943 * 15 13 11 18 18 H 1.48499 * 109.47618 * 274.90658 * 17 15 13 19 19 H 1.48501 * 109.47391 * 34.90437 * 17 15 13 20 20 H 1.48502 * 109.47339 * 154.90491 * 17 15 13 21 21 C 1.53877 * 106.59609 * 336.39270 * 11 10 9 22 22 C 1.53005 * 109.46847 * 305.42786 * 4 3 2 23 23 C 1.52995 * 109.47090 * 180.21482 * 22 4 3 24 24 C 1.53003 * 109.47234 * 300.21814 * 22 4 3 25 25 H 1.08998 * 109.47004 * 299.99962 * 1 2 3 26 26 H 1.09004 * 109.47526 * 59.99388 * 1 2 3 27 27 H 1.08996 * 109.47410 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47302 * 59.99904 * 3 2 1 29 29 H 1.09005 * 109.47081 * 299.99952 * 3 2 1 30 30 H 1.00898 * 111.00393 * 261.73967 * 6 4 3 31 31 H 1.09003 * 110.74997 * 321.69063 * 9 7 6 32 32 H 1.08999 * 110.75567 * 84.87394 * 9 7 6 33 33 H 1.09002 * 110.48344 * 279.25558 * 10 9 7 34 34 H 1.09006 * 110.48805 * 156.62206 * 10 9 7 35 35 H 0.97001 * 119.99658 * 180.02562 * 16 15 13 36 36 H 1.09000 * 110.02976 * 119.28496 * 21 11 10 37 37 H 1.09002 * 110.03013 * 240.66349 * 21 11 10 38 38 H 1.09002 * 109.46734 * 60.21287 * 22 4 3 39 39 H 1.09000 * 109.46774 * 176.09318 * 23 22 4 40 40 H 1.09004 * 109.47123 * 296.08986 * 23 22 4 41 41 H 1.09001 * 109.47123 * 56.09378 * 23 22 4 42 42 H 1.09002 * 109.47236 * 65.37761 * 24 22 4 43 43 H 1.08998 * 109.46990 * 185.37903 * 24 22 4 44 44 H 1.08994 * 109.46787 * 305.37614 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9785 2.1757 0.0966 6 7 3.9776 0.5720 -1.2604 7 6 5.1680 1.2526 -1.7875 8 1 5.6853 1.7866 -0.9903 9 6 4.7765 2.2238 -2.9288 10 6 6.0951 2.3589 -3.7300 11 6 6.7050 0.9423 -3.6967 12 1 6.4348 0.3973 -4.6011 13 6 8.2045 1.0287 -3.5750 14 1 8.6685 1.0216 -2.5998 15 6 8.9843 1.1166 -4.7088 16 7 10.2829 1.2944 -4.6015 17 14 8.1951 0.9908 -6.3971 18 1 8.0606 -0.4389 -6.7754 19 1 6.8516 1.6224 -6.3639 20 1 9.0457 1.6887 -7.3944 21 6 6.1155 0.2390 -2.4615 22 6 3.9783 0.3105 1.1745 23 6 5.5038 0.1940 1.1770 24 6 3.5130 0.9457 2.4864 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.6886 1.8463 0.8899 29 1 1.6886 1.8463 -0.8900 30 1 4.1484 -0.4153 -1.1421 31 1 3.9900 1.7938 -3.5490 32 1 4.4652 3.1877 -2.5261 33 1 6.7627 3.0732 -3.2481 34 1 5.8885 2.6613 -4.7567 35 1 10.8314 1.3566 -5.3991 36 1 5.5585 -0.6469 -2.7667 37 1 6.9141 -0.0408 -1.7745 38 1 3.5382 -0.6818 1.0752 39 1 5.8236 -0.3705 2.0529 40 1 5.8304 -0.3212 0.2736 41 1 5.9442 1.1907 1.2064 42 1 2.4237 0.9415 2.5259 43 1 3.9093 0.3756 3.3266 44 1 3.8747 1.9724 2.5411 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378724400.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:28 Heat of formation + Delta-G solvation = -70.486643 kcal Electronic energy + Delta-G solvation = -20137.176708 eV Core-core repulsion = 17281.475733 eV Total energy + Delta-G solvation = -2855.700975 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.11861 -37.49115 -36.01982 -32.93556 -31.75956 -29.41249 -28.35081 -27.00741 -26.63125 -25.47854 -23.43594 -22.43162 -20.12171 -19.46593 -18.72399 -17.06457 -16.35063 -16.02617 -15.49588 -15.00875 -14.85466 -14.57408 -13.99904 -13.52916 -13.20205 -12.89594 -12.66367 -12.52991 -12.23452 -12.15812 -12.15720 -11.80530 -11.53973 -11.20397 -11.03271 -10.83538 -10.62174 -10.52993 -10.39239 -10.34928 -10.05592 -9.84863 -9.61206 -9.57847 -9.34382 -8.87592 -8.46069 -7.95637 -6.02259 -3.99266 3.33599 3.41638 3.45196 3.84481 4.42760 4.48417 4.74581 4.92324 5.05861 5.18255 5.24720 5.26110 5.42371 5.47362 5.51606 5.53458 5.55220 5.63323 5.68536 5.72985 5.85663 5.86888 5.93874 5.96846 6.14440 6.24293 6.33723 6.37950 6.43603 6.50030 6.57221 6.75820 6.82119 6.98632 7.05302 7.19257 7.36285 7.51272 7.59280 7.81481 7.88586 8.60344 9.02663 9.62206 11.11265 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.031029 B = 0.004935 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.157680 B = 5672.817348 C = 6203.067450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.379 6.379 3 C 0.074 3.926 4 C 0.094 3.906 5 H 0.082 0.918 6 N -0.674 5.674 7 C 0.081 3.919 8 H 0.052 0.948 9 C -0.110 4.110 10 C -0.123 4.123 11 C 0.015 3.985 12 H 0.028 0.972 13 C -0.506 4.506 14 H 0.071 0.929 15 C 0.068 3.932 16 N -0.905 5.905 17 Si 0.876 3.124 18 H -0.278 1.278 19 H -0.262 1.262 20 H -0.292 1.292 21 C -0.114 4.114 22 C -0.116 4.116 23 C -0.154 4.154 24 C -0.142 4.142 25 H 0.034 0.966 26 H 0.038 0.962 27 H 0.080 0.920 28 H 0.044 0.956 29 H 0.052 0.948 30 H 0.343 0.657 31 H 0.062 0.938 32 H 0.044 0.956 33 H 0.062 0.938 34 H 0.045 0.955 35 H 0.262 0.738 36 H 0.049 0.951 37 H 0.060 0.940 38 H 0.080 0.920 39 H 0.053 0.947 40 H 0.061 0.939 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.052 0.948 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.356 -0.339 11.088 20.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.298 6.298 3 C -0.003 4.003 4 C -0.016 4.016 5 H 0.100 0.900 6 N -0.304 5.304 7 C -0.028 4.028 8 H 0.070 0.930 9 C -0.148 4.148 10 C -0.161 4.161 11 C -0.004 4.004 12 H 0.046 0.954 13 C -0.544 4.544 14 H 0.089 0.911 15 C -0.133 4.133 16 N -0.543 5.543 17 Si 0.704 3.296 18 H -0.204 1.204 19 H -0.187 1.187 20 H -0.218 1.218 21 C -0.152 4.152 22 C -0.135 4.135 23 C -0.211 4.211 24 C -0.200 4.200 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.099 0.901 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.163 0.837 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.099 0.901 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.496 -0.127 10.584 20.448 hybrid contribution 0.207 -0.086 -0.357 0.421 sum -17.289 -0.213 10.227 20.088 Atomic orbital electron populations 1.22668 0.82062 1.02237 0.99446 1.87903 1.18637 1.27993 1.95239 1.22661 0.93724 0.84598 0.99304 1.21776 0.92893 0.98149 0.88824 0.90011 1.60636 1.35832 1.07401 1.26568 1.22586 0.88526 0.95656 0.96052 0.92988 1.22516 0.98283 0.97146 0.96897 1.22747 0.94618 1.00699 0.98081 1.19608 0.96034 0.91470 0.93324 0.95375 1.21147 0.88793 1.49929 0.94545 0.91103 1.25062 0.94669 0.94524 0.99046 1.69921 1.04807 1.50253 1.29342 0.86885 0.79843 0.78480 0.84372 1.20400 1.18700 1.21796 1.22456 0.96938 0.96864 0.98958 1.21679 0.96056 1.00614 0.95175 1.21958 0.95057 1.01989 1.02112 1.21815 1.00888 1.00455 0.96883 0.94783 0.94334 0.90096 0.93824 0.92979 0.83691 0.91879 0.93735 0.91881 0.93658 0.92823 0.93185 0.92097 0.90118 0.92819 0.92031 0.92715 0.92743 0.92927 0.92998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.38 -4.63 9.76 -35.23 -0.34 -4.97 16 3 C 0.07 0.86 5.26 37.16 0.20 1.05 16 4 C 0.09 1.18 2.11 -67.71 -0.14 1.03 16 5 H 0.08 1.05 7.33 -51.93 -0.38 0.67 16 6 N -0.67 -9.87 5.94 -98.01 -0.58 -10.45 16 7 C 0.08 1.37 2.18 -66.06 -0.14 1.23 16 8 H 0.05 0.90 6.58 -51.93 -0.34 0.56 16 9 C -0.11 -1.96 6.58 -24.74 -0.16 -2.12 16 10 C -0.12 -2.62 6.09 -25.08 -0.15 -2.77 16 11 C 0.02 0.35 2.35 -90.66 -0.21 0.14 16 12 H 0.03 0.68 5.84 -51.93 -0.30 0.37 16 13 C -0.51 -14.14 8.62 -34.44 -0.30 -14.43 16 14 H 0.07 2.14 7.83 -52.49 -0.41 1.73 16 15 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 16 N -0.90 -27.85 13.96 55.43 0.77 -27.08 16 17 Si 0.88 21.86 26.82 -169.99 -4.56 17.30 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.26 -6.26 5.96 56.52 0.34 -5.93 16 20 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 21 C -0.11 -2.25 5.61 -25.61 -0.14 -2.40 16 22 C -0.12 -1.33 2.10 -90.62 -0.19 -1.52 16 23 C -0.15 -1.90 8.09 37.16 0.30 -1.60 16 24 C -0.14 -1.40 8.68 37.16 0.32 -1.08 16 25 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.04 0.43 6.86 -51.93 -0.36 0.08 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.34 5.07 7.02 -39.29 -0.28 4.79 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 1.41 7.85 -51.93 -0.41 1.00 16 34 H 0.04 0.97 7.20 -51.93 -0.37 0.59 16 35 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 36 H 0.05 0.93 7.75 -51.93 -0.40 0.53 16 37 H 0.06 1.26 7.30 -51.93 -0.38 0.88 16 38 H 0.08 1.00 7.54 -51.93 -0.39 0.61 16 39 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.84 6.28 -51.93 -0.33 0.52 16 41 H 0.05 0.70 7.88 -51.93 -0.41 0.29 16 42 H 0.05 0.51 6.85 -51.93 -0.36 0.16 16 43 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 332.49 15.07 5.01 5.01 Total: -1.00 -29.65 332.49 -7.43 -37.08 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -8.12 Total: 2.29 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: 0.39 Total: -19.19 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.19 Total: -37.53 kcal Atomic # 8 Polarization: -4.63 SS G_CDS: -0.34 Total: -4.97 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.56 Total: 17.30 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.65 -7.43 -37.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378724400.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.402 kcal (2) G-P(sol) polarization free energy of solvation -29.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds