Wall clock time and date at job start Mon Mar 30 2020 06:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 114.00176 * 2 1 4 4 C 1.53002 * 109.47267 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47134 * 185.43289 * 4 3 2 6 6 N 1.46894 * 109.47325 * 65.42662 * 4 3 2 7 7 C 1.46901 * 111.00163 * 137.78395 * 6 4 3 8 8 H 1.09000 * 110.43152 * 21.54022 * 7 6 4 9 9 C 1.54891 * 110.49065 * 258.86145 * 7 6 4 10 10 C 1.54883 * 102.74764 * 203.37867 * 9 7 6 11 11 C 1.54264 * 104.20039 * 37.93801 * 10 9 7 12 12 H 1.09004 * 110.07558 * 95.69504 * 11 10 9 13 13 C 1.50696 * 110.03342 * 217.10519 * 11 10 9 14 14 H 1.07999 * 119.99895 * 91.69261 * 13 11 10 15 15 C 1.37881 * 119.99995 * 271.69158 * 13 11 10 16 16 N 1.31515 * 119.99672 * 174.81587 * 15 13 11 17 17 Si 1.86788 * 120.00098 * 355.08943 * 15 13 11 18 18 H 1.48499 * 109.47618 * 274.90658 * 17 15 13 19 19 H 1.48501 * 109.47391 * 34.90437 * 17 15 13 20 20 H 1.48502 * 109.47339 * 154.90491 * 17 15 13 21 21 C 1.53877 * 106.59609 * 336.39270 * 11 10 9 22 22 C 1.53005 * 109.46847 * 305.42786 * 4 3 2 23 23 C 1.52995 * 109.47090 * 180.21482 * 22 4 3 24 24 C 1.53003 * 109.47234 * 300.21814 * 22 4 3 25 25 H 1.08998 * 109.47004 * 299.99962 * 1 2 3 26 26 H 1.09004 * 109.47526 * 59.99388 * 1 2 3 27 27 H 1.08996 * 109.47410 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47302 * 59.99904 * 3 2 1 29 29 H 1.09005 * 109.47081 * 299.99952 * 3 2 1 30 30 H 1.00898 * 111.00393 * 261.73967 * 6 4 3 31 31 H 1.09003 * 110.74997 * 321.69063 * 9 7 6 32 32 H 1.08999 * 110.75567 * 84.87394 * 9 7 6 33 33 H 1.09002 * 110.48344 * 279.25558 * 10 9 7 34 34 H 1.09006 * 110.48805 * 156.62206 * 10 9 7 35 35 H 0.97001 * 119.99658 * 180.02562 * 16 15 13 36 36 H 1.09000 * 110.02976 * 119.28496 * 21 11 10 37 37 H 1.09002 * 110.03013 * 240.66349 * 21 11 10 38 38 H 1.09002 * 109.46734 * 60.21287 * 22 4 3 39 39 H 1.09000 * 109.46774 * 176.09318 * 23 22 4 40 40 H 1.09004 * 109.47123 * 296.08986 * 23 22 4 41 41 H 1.09001 * 109.47123 * 56.09378 * 23 22 4 42 42 H 1.09002 * 109.47236 * 65.37761 * 24 22 4 43 43 H 1.08998 * 109.46990 * 185.37903 * 24 22 4 44 44 H 1.08994 * 109.46787 * 305.37614 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9785 2.1757 0.0966 6 7 3.9776 0.5720 -1.2604 7 6 5.1680 1.2526 -1.7875 8 1 5.6853 1.7866 -0.9903 9 6 4.7765 2.2238 -2.9288 10 6 6.0951 2.3589 -3.7300 11 6 6.7050 0.9423 -3.6967 12 1 6.4348 0.3973 -4.6011 13 6 8.2045 1.0287 -3.5750 14 1 8.6685 1.0216 -2.5998 15 6 8.9843 1.1166 -4.7088 16 7 10.2829 1.2944 -4.6015 17 14 8.1951 0.9908 -6.3971 18 1 8.0606 -0.4389 -6.7754 19 1 6.8516 1.6224 -6.3639 20 1 9.0457 1.6887 -7.3944 21 6 6.1155 0.2390 -2.4615 22 6 3.9783 0.3105 1.1745 23 6 5.5038 0.1940 1.1770 24 6 3.5130 0.9457 2.4864 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.6886 1.8463 0.8899 29 1 1.6886 1.8463 -0.8900 30 1 4.1484 -0.4153 -1.1421 31 1 3.9900 1.7938 -3.5490 32 1 4.4652 3.1877 -2.5261 33 1 6.7627 3.0732 -3.2481 34 1 5.8885 2.6613 -4.7567 35 1 10.8314 1.3566 -5.3991 36 1 5.5585 -0.6469 -2.7667 37 1 6.9141 -0.0408 -1.7745 38 1 3.5382 -0.6818 1.0752 39 1 5.8236 -0.3705 2.0529 40 1 5.8304 -0.3212 0.2736 41 1 5.9442 1.1907 1.2064 42 1 2.4237 0.9415 2.5259 43 1 3.9093 0.3756 3.3266 44 1 3.8747 1.9724 2.5411 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378724400.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:27 Heat of formation + Delta-G solvation = -89.550813 kcal Electronic energy + Delta-G solvation = -20138.003392 eV Core-core repulsion = 17281.475733 eV Total energy + Delta-G solvation = -2856.527659 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.24572 -38.74245 -37.13442 -34.73079 -33.32779 -30.52196 -30.05588 -28.21168 -27.58604 -26.53001 -25.23963 -23.45193 -21.28344 -21.00191 -20.26608 -19.16268 -17.31598 -16.91532 -16.64035 -16.35336 -16.17761 -15.88025 -15.31747 -14.93171 -14.65976 -14.38111 -14.00948 -13.85831 -13.61653 -13.28154 -13.06619 -12.94229 -12.75789 -12.55504 -12.41891 -12.17144 -12.08845 -11.87580 -11.68811 -11.60435 -11.55550 -11.46275 -11.35600 -11.08892 -10.89179 -10.63911 -10.39523 -9.16255 -8.26369 -6.27451 1.36050 1.37157 1.48858 2.37909 3.04719 3.08980 3.27852 3.79511 3.94468 4.00096 4.07248 4.15403 4.35588 4.47016 4.54516 4.60420 4.65546 4.67847 4.70011 4.74201 4.77091 4.81912 4.86987 4.92130 4.94296 5.00418 5.04648 5.06680 5.11606 5.22581 5.25882 5.31705 5.41010 5.43139 5.50764 5.58820 5.67874 5.83144 6.26117 6.37470 6.46328 6.59364 6.78816 7.37053 8.90783 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.031029 B = 0.004935 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.157680 B = 5672.817348 C = 6203.067450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.400 6.400 3 C 0.079 3.921 4 C 0.092 3.908 5 H 0.081 0.919 6 N -0.670 5.670 7 C 0.096 3.904 8 H 0.047 0.953 9 C -0.098 4.098 10 C -0.121 4.121 11 C 0.007 3.993 12 H 0.027 0.973 13 C -0.507 4.507 14 H 0.029 0.971 15 C 0.008 3.992 16 N -0.954 5.954 17 Si 0.941 3.059 18 H -0.270 1.270 19 H -0.242 1.242 20 H -0.290 1.290 21 C -0.109 4.109 22 C -0.107 4.107 23 C -0.152 4.152 24 C -0.138 4.138 25 H 0.049 0.951 26 H 0.040 0.960 27 H 0.090 0.910 28 H 0.064 0.936 29 H 0.047 0.953 30 H 0.343 0.657 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.045 0.955 34 H 0.046 0.954 35 H 0.264 0.736 36 H 0.062 0.938 37 H 0.042 0.958 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.042 0.958 41 H 0.047 0.953 42 H 0.062 0.938 43 H 0.057 0.943 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.316 -0.170 11.252 23.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.319 6.319 3 C 0.002 3.998 4 C -0.018 4.018 5 H 0.099 0.901 6 N -0.301 5.301 7 C -0.014 4.014 8 H 0.065 0.935 9 C -0.136 4.136 10 C -0.159 4.159 11 C -0.012 4.012 12 H 0.045 0.955 13 C -0.545 4.545 14 H 0.047 0.953 15 C -0.188 4.188 16 N -0.595 5.595 17 Si 0.765 3.235 18 H -0.195 1.195 19 H -0.165 1.165 20 H -0.217 1.217 21 C -0.147 4.147 22 C -0.127 4.127 23 C -0.209 4.209 24 C -0.196 4.196 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.108 0.892 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.163 0.837 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.061 0.939 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -20.490 0.040 10.768 23.147 hybrid contribution 1.160 -0.167 -0.301 1.210 sum -19.330 -0.127 10.468 21.983 Atomic orbital electron populations 1.22824 0.80527 1.03208 1.00277 1.87869 1.20367 1.28288 1.95411 1.22595 0.92582 0.84657 1.00014 1.21864 0.93930 0.98016 0.88039 0.90077 1.60636 1.34004 1.07322 1.28118 1.22329 0.88729 0.94632 0.95686 0.93480 1.22422 0.96289 0.98444 0.96485 1.22600 0.96123 0.98474 0.98739 1.19661 0.93191 0.93461 0.94881 0.95500 1.21425 0.91505 1.48824 0.92778 0.95259 1.25935 0.95047 0.94433 1.03410 1.70072 1.06577 1.52332 1.30547 0.85847 0.79684 0.78947 0.79023 1.19543 1.16546 1.21654 1.22327 0.97134 0.97882 0.97358 1.21576 0.95008 1.00242 0.95865 1.21936 0.95977 1.01413 1.01617 1.21776 1.01386 1.00586 0.95862 0.93279 0.94130 0.89167 0.91834 0.93516 0.83708 0.91122 0.91624 0.93635 0.93482 0.92763 0.91897 0.93936 0.90784 0.91883 0.93902 0.93411 0.91934 0.92344 0.92563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 113.37 1.25 1.68 16 2 O -0.40 -8.74 9.76 -148.98 -1.45 -10.19 16 3 C 0.08 1.59 5.26 71.98 0.38 1.97 16 4 C 0.09 2.09 2.11 44.92 0.09 2.19 16 5 H 0.08 1.89 7.33 -2.39 -0.02 1.87 16 6 N -0.67 -18.39 5.94 -464.00 -2.76 -21.15 16 7 C 0.10 3.13 2.18 45.99 0.10 3.23 16 8 H 0.05 1.59 6.58 -2.39 -0.02 1.58 16 9 C -0.10 -3.26 6.58 31.88 0.21 -3.05 16 10 C -0.12 -5.01 6.09 31.67 0.19 -4.82 16 11 C 0.01 0.34 2.35 -10.82 -0.03 0.32 16 12 H 0.03 1.26 5.84 -2.38 -0.01 1.24 16 13 C -0.51 -29.18 8.62 25.60 0.22 -28.96 16 14 H 0.03 1.87 7.83 -2.91 -0.02 1.85 16 15 C 0.01 0.46 5.47 84.66 0.46 0.93 16 16 N -0.95 -60.63 13.96 21.45 0.30 -60.33 16 17 Si 0.94 45.07 26.82 68.60 1.84 46.91 16 18 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 19 H -0.24 -10.70 5.96 99.48 0.59 -10.11 16 20 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 21 C -0.11 -4.27 5.61 31.32 0.18 -4.10 16 22 C -0.11 -2.27 2.10 -10.79 -0.02 -2.30 16 23 C -0.15 -3.65 8.09 71.98 0.58 -3.07 16 24 C -0.14 -2.37 8.68 71.98 0.62 -1.75 16 25 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.04 0.61 8.14 -2.38 -0.02 0.59 16 27 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.06 1.04 6.86 -2.39 -0.02 1.02 16 29 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.34 9.61 7.02 -89.70 -0.63 8.98 16 31 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.04 2.02 7.85 -2.39 -0.02 2.00 16 34 H 0.05 1.91 7.20 -2.38 -0.02 1.89 16 35 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 36 H 0.06 2.29 7.75 -2.39 -0.02 2.27 16 37 H 0.04 1.80 7.30 -2.39 -0.02 1.78 16 38 H 0.07 1.71 7.54 -2.39 -0.02 1.69 16 39 H 0.06 1.36 8.14 -2.39 -0.02 1.35 16 40 H 0.04 1.17 6.28 -2.38 -0.01 1.16 16 41 H 0.05 1.19 7.88 -2.39 -0.02 1.18 16 42 H 0.06 0.98 6.85 -2.39 -0.02 0.97 16 43 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -64.74 332.49 2.38 -62.36 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 0.21 Total: 20.11 kcal Atomic # 6 Polarization: -41.96 SS G_CDS: 4.24 Total: -37.72 kcal Atomic # 7 Polarization: -79.02 SS G_CDS: -2.46 Total: -81.48 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -1.45 Total: -10.19 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.84 Total: 46.91 kcal Total: -64.74 2.38 -62.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378724400.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.191 kcal (2) G-P(sol) polarization free energy of solvation -64.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds