Wall clock time and date at job start Mon Mar 30 2020 06:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53007 * 109.46977 * 2 1 4 4 C 1.53000 * 109.46793 * 119.99634 * 2 1 3 5 5 H 1.09002 * 109.47903 * 60.00320 * 4 2 1 6 6 C 1.53092 * 109.47697 * 180.02562 * 4 2 1 7 7 C 1.53187 * 109.16046 * 177.60562 * 6 4 2 8 8 H 1.08998 * 109.53902 * 183.15117 * 7 6 4 9 9 C 1.52999 * 109.54443 * 62.97625 * 7 6 4 10 10 N 1.46891 * 109.47051 * 174.99916 * 9 7 6 11 11 C 1.46901 * 110.99936 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47001 * 180.02562 * 11 10 9 13 13 C 1.50707 * 109.47146 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99784 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99968 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00215 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99754 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46968 * 60.00070 * 17 15 13 19 19 H 1.48500 * 109.46751 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47020 * 300.00300 * 17 15 13 21 21 C 1.53170 * 109.03414 * 303.01542 * 7 6 4 22 22 C 1.53098 * 109.16567 * 56.98410 * 21 7 6 23 23 O 1.42905 * 109.48308 * 299.97975 * 4 2 1 24 24 H 1.08993 * 109.47327 * 300.00298 * 1 2 3 25 25 H 1.08999 * 109.46642 * 60.00016 * 1 2 3 26 26 H 1.08992 * 109.46701 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47327 * 239.99702 * 2 1 3 28 28 H 1.09002 * 109.46841 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.46924 * 300.00061 * 3 2 1 30 30 H 1.09001 * 109.47182 * 59.99424 * 3 2 1 31 31 H 1.08999 * 109.52366 * 297.50656 * 6 4 2 32 32 H 1.08996 * 109.52608 * 57.63834 * 6 4 2 33 33 H 1.09006 * 109.46747 * 294.99638 * 9 7 6 34 34 H 1.08997 * 109.47550 * 54.99733 * 9 7 6 35 35 H 1.00905 * 111.00310 * 56.04353 * 10 9 7 36 36 H 1.08997 * 109.47508 * 299.99802 * 11 10 9 37 37 H 1.09001 * 109.47332 * 60.00653 * 11 10 9 38 38 H 1.08997 * 109.47466 * 299.99889 * 12 11 10 39 39 H 1.08995 * 109.47439 * 60.00210 * 12 11 10 40 40 H 0.96997 * 119.99720 * 180.02562 * 16 15 13 41 41 H 1.09009 * 109.52161 * 176.88447 * 21 7 6 42 42 H 1.08993 * 109.52797 * 297.07837 * 21 7 6 43 43 H 1.09000 * 109.47746 * 62.36690 * 22 21 7 44 44 H 1.08992 * 109.48241 * 182.39779 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6767 -1.7489 1.2495 6 6 3.5709 -0.7207 1.2498 7 6 4.0734 -1.3912 2.5322 8 1 5.1619 -1.3445 2.5656 9 6 3.6230 -2.8532 2.5558 10 7 4.2049 -3.5261 3.7247 11 6 3.7927 -4.9350 3.7805 12 6 4.4166 -5.6006 5.0087 13 6 3.9941 -7.0462 5.0656 14 1 3.3452 -7.4496 4.3023 15 6 4.4361 -7.8536 6.0921 16 7 5.2258 -7.3623 7.0219 17 14 3.9119 -9.6452 6.1630 18 1 4.3691 -10.3437 4.9349 19 1 4.5185 -10.2916 7.3544 20 1 2.4319 -9.7246 6.2557 21 6 3.4915 -0.6542 3.7423 22 6 1.9636 -0.6571 3.6456 23 8 1.5641 -0.0474 2.4162 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3632 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6766 1.9564 0.8899 31 1 3.9356 -1.2724 0.3834 32 1 3.9349 0.3058 1.2077 33 1 2.5355 -2.8974 2.6151 34 1 3.9577 -3.3513 1.6459 35 1 3.9618 -3.0445 4.5774 36 1 2.7064 -4.9933 3.8485 37 1 4.1284 -5.4478 2.8791 38 1 5.5029 -5.5424 4.9412 39 1 4.0806 -5.0879 5.9099 40 1 5.5370 -7.9305 7.7438 41 1 3.7994 -1.1583 4.6585 42 1 3.8538 0.3737 3.7517 43 1 1.5994 -1.6840 3.6770 44 1 1.5453 -0.0972 4.4819 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381170482.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:59 Heat of formation + Delta-G solvation = -80.704732 kcal Electronic energy + Delta-G solvation = -19632.275463 eV Core-core repulsion = 16776.131398 eV Total energy + Delta-G solvation = -2856.144064 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.15028 -36.52126 -35.19575 -33.91784 -32.46338 -30.19220 -29.29417 -27.35054 -25.96415 -24.40988 -23.72372 -22.93872 -20.58746 -20.29447 -18.73761 -16.54877 -16.29474 -16.03370 -15.61139 -14.99403 -14.67431 -14.49060 -14.29698 -13.91876 -13.58931 -13.27604 -13.15448 -12.63510 -12.43963 -12.18419 -11.99254 -11.75178 -11.65040 -11.52005 -11.13852 -11.03164 -10.94238 -10.91626 -10.78047 -10.53803 -10.39873 -10.17612 -9.98847 -9.35674 -9.28543 -9.15916 -8.35361 -7.79828 -5.99990 -4.02773 3.33178 3.37465 3.39876 3.71896 4.41740 4.50182 4.59018 4.76172 4.80879 4.89589 4.97463 5.06006 5.14278 5.24362 5.35315 5.35819 5.45212 5.51830 5.56811 5.62456 5.67828 5.73571 5.79245 5.79990 5.87758 5.92102 6.04768 6.06272 6.20670 6.22742 6.25779 6.31761 6.35100 6.44112 6.97172 7.21052 7.47798 7.72020 7.82335 7.95471 8.08010 8.43185 9.04250 9.60995 11.11435 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.039149 B = 0.003522 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.044604 B = 7949.077028 C = 8189.418218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 C -0.145 4.145 4 C 0.093 3.907 5 H 0.058 0.942 6 C -0.144 4.144 7 C -0.089 4.089 8 H 0.083 0.917 9 C 0.059 3.941 10 N -0.691 5.691 11 C 0.065 3.935 12 C 0.026 3.974 13 C -0.523 4.523 14 H 0.053 0.947 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.152 4.152 22 C 0.058 3.942 23 O -0.376 6.376 24 H 0.063 0.937 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.078 0.922 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.024 0.976 34 H 0.067 0.933 35 H 0.334 0.666 36 H 0.013 0.987 37 H 0.057 0.943 38 H 0.025 0.975 39 H 0.013 0.987 40 H 0.261 0.739 41 H 0.078 0.922 42 H 0.069 0.931 43 H 0.051 0.949 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.610 17.154 -12.314 22.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.106 4.106 3 C -0.202 4.202 4 C 0.035 3.965 5 H 0.076 0.924 6 C -0.182 4.182 7 C -0.107 4.107 8 H 0.101 0.899 9 C -0.071 4.071 10 N -0.322 5.322 11 C -0.063 4.063 12 C -0.012 4.012 13 C -0.562 4.562 14 H 0.072 0.928 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.721 3.279 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.203 1.203 21 C -0.189 4.189 22 C -0.018 4.018 23 O -0.295 6.295 24 H 0.082 0.918 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.097 0.903 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.042 0.958 34 H 0.085 0.915 35 H 0.152 0.848 36 H 0.032 0.968 37 H 0.076 0.924 38 H 0.043 0.957 39 H 0.031 0.969 40 H 0.071 0.929 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.069 0.931 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.033 17.123 -12.475 22.028 hybrid contribution -0.944 -1.278 0.463 1.655 sum -6.977 15.845 -12.012 21.072 Atomic orbital electron populations 1.21771 0.94791 1.01690 1.01935 1.21158 0.96442 0.96995 0.96039 1.21819 1.00901 0.95651 1.01815 1.22140 0.93041 0.95556 0.85773 0.92373 1.22272 0.96064 1.01661 0.98247 1.21213 1.01275 0.94228 0.94023 0.89873 1.22068 0.96163 0.93268 0.95582 1.60627 1.62850 1.04029 1.04713 1.22156 0.96439 0.86053 1.01618 1.19058 0.96829 0.94304 0.90961 1.21148 1.30007 0.95396 1.09645 0.92834 1.25001 0.95101 0.98589 0.95639 1.69960 1.34017 1.36110 1.13177 0.86644 0.78800 0.85016 0.77450 1.20210 1.21244 1.20280 1.22200 0.96218 1.01211 0.99309 1.22604 0.94388 0.98175 0.86646 1.87873 1.74652 1.53644 1.13314 0.91803 0.92992 0.92969 0.90343 0.92575 0.93178 0.91843 0.91033 0.90702 0.95821 0.91478 0.84777 0.96829 0.92414 0.95660 0.96883 0.92917 0.90366 0.91212 0.93118 0.89122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.05 37.16 0.34 -0.96 16 2 C -0.09 -0.80 2.81 -90.61 -0.25 -1.06 16 3 C -0.14 -1.24 8.70 37.16 0.32 -0.92 16 4 C 0.09 0.99 2.10 -26.68 -0.06 0.94 16 5 H 0.06 0.68 6.72 -51.93 -0.35 0.33 16 6 C -0.14 -1.50 4.63 -26.59 -0.12 -1.62 16 7 C -0.09 -1.07 2.89 -90.44 -0.26 -1.33 16 8 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 9 C 0.06 0.85 4.58 -3.83 -0.02 0.83 16 10 N -0.69 -12.34 6.50 -113.78 -0.74 -13.08 16 11 C 0.07 1.40 5.62 -3.82 -0.02 1.38 16 12 C 0.03 0.68 5.23 -27.88 -0.15 0.54 16 13 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 14 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -27.12 13.29 55.43 0.74 -26.38 16 17 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 C -0.15 -1.73 5.48 -26.59 -0.15 -1.88 16 22 C 0.06 0.67 6.57 37.21 0.24 0.91 16 23 O -0.38 -4.47 9.06 -35.23 -0.32 -4.79 16 24 H 0.06 0.63 7.68 -51.93 -0.40 0.23 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.46 6.38 -51.93 -0.33 0.13 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.61 7.68 -51.93 -0.40 0.21 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.74 6.31 -51.93 -0.33 0.42 16 33 H 0.02 0.35 5.04 -51.93 -0.26 0.08 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.33 5.75 6.96 -39.29 -0.27 5.48 16 36 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.08 0.93 6.58 -51.92 -0.34 0.59 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.05 0.63 6.50 -51.93 -0.34 0.29 16 44 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 333.68 15.07 5.03 5.03 Total: -1.00 -30.02 333.68 -8.91 -38.93 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -8.06 Total: 0.43 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: -0.53 Total: -16.91 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.00 Total: -39.46 kcal Atomic # 8 Polarization: -4.47 SS G_CDS: -0.32 Total: -4.79 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.02 -8.91 -38.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381170482.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.777 kcal (2) G-P(sol) polarization free energy of solvation -30.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds