Wall clock time and date at job start Mon Mar 30 2020 06:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53007 * 109.46977 * 2 1 4 4 C 1.53000 * 109.46793 * 119.99634 * 2 1 3 5 5 H 1.09002 * 109.47903 * 60.00320 * 4 2 1 6 6 C 1.53092 * 109.47697 * 180.02562 * 4 2 1 7 7 C 1.53187 * 109.16046 * 177.60562 * 6 4 2 8 8 H 1.08998 * 109.53902 * 183.15117 * 7 6 4 9 9 C 1.52999 * 109.54443 * 62.97625 * 7 6 4 10 10 N 1.46891 * 109.47051 * 174.99916 * 9 7 6 11 11 C 1.46901 * 110.99936 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47001 * 180.02562 * 11 10 9 13 13 C 1.50707 * 109.47146 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99784 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99968 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00215 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99754 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46968 * 60.00070 * 17 15 13 19 19 H 1.48500 * 109.46751 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47020 * 300.00300 * 17 15 13 21 21 C 1.53170 * 109.03414 * 303.01542 * 7 6 4 22 22 C 1.53098 * 109.16567 * 56.98410 * 21 7 6 23 23 O 1.42905 * 109.48308 * 299.97975 * 4 2 1 24 24 H 1.08993 * 109.47327 * 300.00298 * 1 2 3 25 25 H 1.08999 * 109.46642 * 60.00016 * 1 2 3 26 26 H 1.08992 * 109.46701 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47327 * 239.99702 * 2 1 3 28 28 H 1.09002 * 109.46841 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.46924 * 300.00061 * 3 2 1 30 30 H 1.09001 * 109.47182 * 59.99424 * 3 2 1 31 31 H 1.08999 * 109.52366 * 297.50656 * 6 4 2 32 32 H 1.08996 * 109.52608 * 57.63834 * 6 4 2 33 33 H 1.09006 * 109.46747 * 294.99638 * 9 7 6 34 34 H 1.08997 * 109.47550 * 54.99733 * 9 7 6 35 35 H 1.00905 * 111.00310 * 56.04353 * 10 9 7 36 36 H 1.08997 * 109.47508 * 299.99802 * 11 10 9 37 37 H 1.09001 * 109.47332 * 60.00653 * 11 10 9 38 38 H 1.08997 * 109.47466 * 299.99889 * 12 11 10 39 39 H 1.08995 * 109.47439 * 60.00210 * 12 11 10 40 40 H 0.96997 * 119.99720 * 180.02562 * 16 15 13 41 41 H 1.09009 * 109.52161 * 176.88447 * 21 7 6 42 42 H 1.08993 * 109.52797 * 297.07837 * 21 7 6 43 43 H 1.09000 * 109.47746 * 62.36690 * 22 21 7 44 44 H 1.08992 * 109.48241 * 182.39779 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6767 -1.7489 1.2495 6 6 3.5709 -0.7207 1.2498 7 6 4.0734 -1.3912 2.5322 8 1 5.1619 -1.3445 2.5656 9 6 3.6230 -2.8532 2.5558 10 7 4.2049 -3.5261 3.7247 11 6 3.7927 -4.9350 3.7805 12 6 4.4166 -5.6006 5.0087 13 6 3.9941 -7.0462 5.0656 14 1 3.3452 -7.4496 4.3023 15 6 4.4361 -7.8536 6.0921 16 7 5.2258 -7.3623 7.0219 17 14 3.9119 -9.6452 6.1630 18 1 4.3691 -10.3437 4.9349 19 1 4.5185 -10.2916 7.3544 20 1 2.4319 -9.7246 6.2557 21 6 3.4915 -0.6542 3.7423 22 6 1.9636 -0.6571 3.6456 23 8 1.5641 -0.0474 2.4162 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3632 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6766 1.9564 0.8899 31 1 3.9356 -1.2724 0.3834 32 1 3.9349 0.3058 1.2077 33 1 2.5355 -2.8974 2.6151 34 1 3.9577 -3.3513 1.6459 35 1 3.9618 -3.0445 4.5774 36 1 2.7064 -4.9933 3.8485 37 1 4.1284 -5.4478 2.8791 38 1 5.5029 -5.5424 4.9412 39 1 4.0806 -5.0879 5.9099 40 1 5.5370 -7.9305 7.7438 41 1 3.7994 -1.1583 4.6585 42 1 3.8538 0.3737 3.7517 43 1 1.5994 -1.6840 3.6770 44 1 1.5453 -0.0972 4.4819 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381170482.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:59 Heat of formation + Delta-G solvation = -98.990493 kcal Electronic energy + Delta-G solvation = -19633.068393 eV Core-core repulsion = 16776.131398 eV Total energy + Delta-G solvation = -2856.936995 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.07498 -37.81153 -36.12488 -35.48067 -34.21665 -31.15042 -31.01137 -28.09812 -27.33718 -25.80876 -24.71843 -24.28990 -22.43855 -21.10319 -19.76678 -18.50806 -17.42545 -17.02895 -16.83512 -16.49068 -15.94207 -15.72997 -15.43627 -14.96584 -14.85353 -14.36394 -14.26463 -13.98657 -13.97530 -13.30940 -13.18706 -12.89145 -12.77061 -12.68854 -12.58611 -12.43690 -12.34202 -12.08375 -11.92816 -11.71606 -11.58385 -11.41696 -11.31385 -11.26083 -10.94220 -10.57652 -10.23100 -9.27625 -8.21713 -6.33680 1.39490 1.42852 1.50878 2.39508 2.86936 3.11548 3.30828 3.67206 3.81118 3.92943 3.99298 4.09890 4.16971 4.25720 4.30812 4.40818 4.50173 4.55183 4.60257 4.69552 4.75403 4.77653 4.79427 4.88987 4.96076 5.03287 5.04376 5.07654 5.11894 5.20554 5.23199 5.28096 5.32341 5.42445 5.48535 5.56961 5.64844 5.76690 6.11787 6.25650 6.33039 6.51431 6.83218 7.35736 8.90277 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.039149 B = 0.003522 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.044604 B = 7949.077028 C = 8189.418218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 C -0.141 4.141 4 C 0.089 3.911 5 H 0.047 0.953 6 C -0.137 4.137 7 C -0.084 4.084 8 H 0.078 0.922 9 C 0.063 3.937 10 N -0.695 5.695 11 C 0.083 3.917 12 C 0.033 3.967 13 C -0.548 4.548 14 H 0.060 0.940 15 C 0.001 3.999 16 N -0.931 5.931 17 Si 0.967 3.033 18 H -0.266 1.266 19 H -0.282 1.282 20 H -0.266 1.266 21 C -0.148 4.148 22 C 0.059 3.941 23 O -0.383 6.383 24 H 0.050 0.950 25 H 0.065 0.935 26 H 0.048 0.952 27 H 0.092 0.908 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.026 0.974 34 H 0.067 0.933 35 H 0.337 0.663 36 H 0.016 0.984 37 H 0.057 0.943 38 H -0.006 1.006 39 H -0.009 1.009 40 H 0.265 0.735 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.038 0.962 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.283 17.283 -13.635 23.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.106 4.106 3 C -0.198 4.198 4 C 0.032 3.968 5 H 0.065 0.935 6 C -0.175 4.175 7 C -0.103 4.103 8 H 0.096 0.904 9 C -0.066 4.066 10 N -0.327 5.327 11 C -0.045 4.045 12 C -0.005 4.005 13 C -0.587 4.587 14 H 0.078 0.922 15 C -0.197 4.197 16 N -0.571 5.571 17 Si 0.791 3.209 18 H -0.191 1.191 19 H -0.207 1.207 20 H -0.191 1.191 21 C -0.186 4.186 22 C -0.018 4.018 23 O -0.302 6.302 24 H 0.069 0.931 25 H 0.084 0.916 26 H 0.067 0.933 27 H 0.110 0.890 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.044 0.956 34 H 0.085 0.915 35 H 0.156 0.844 36 H 0.034 0.966 37 H 0.075 0.925 38 H 0.013 0.987 39 H 0.009 0.991 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.098 0.902 43 H 0.056 0.944 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.714 17.271 -13.813 23.112 hybrid contribution -0.724 -1.264 0.875 1.699 sum -7.438 16.007 -12.938 21.885 Atomic orbital electron populations 1.21753 0.94782 1.01505 1.01989 1.21203 0.96477 0.97349 0.95580 1.21785 1.01120 0.95128 1.01800 1.22240 0.93248 0.95222 0.86123 0.93503 1.22234 0.95755 1.02079 0.97477 1.21160 1.00973 0.92694 0.95438 0.90368 1.22114 0.96158 0.94504 0.93864 1.60546 1.63366 1.02592 1.06183 1.21774 0.95943 0.87865 0.98966 1.18906 0.95024 0.94163 0.92365 1.21595 1.30331 0.96663 1.10077 0.92195 1.25984 0.94892 1.03753 0.95065 1.70097 1.35079 1.38073 1.13857 0.85469 0.78828 0.78731 0.77826 1.19130 1.20705 1.19110 1.22169 0.96222 1.01585 0.98627 1.22613 0.94349 0.97687 0.87130 1.87878 1.74888 1.53809 1.13648 0.93074 0.91602 0.93286 0.89031 0.92155 0.91936 0.93121 0.90030 0.89744 0.95579 0.91458 0.84412 0.96615 0.92474 0.98724 0.99061 0.92672 0.91155 0.90153 0.94413 0.87927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.05 71.98 0.65 -1.69 16 2 C -0.09 -1.43 2.81 -10.79 -0.03 -1.46 16 3 C -0.14 -2.12 8.70 71.98 0.63 -1.49 16 4 C 0.09 1.78 2.10 30.62 0.06 1.85 16 5 H 0.05 1.04 6.72 -2.39 -0.02 1.03 16 6 C -0.14 -2.59 4.63 30.69 0.14 -2.45 16 7 C -0.08 -1.92 2.89 -10.67 -0.03 -1.96 16 8 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 9 C 0.06 1.76 4.58 86.30 0.40 2.16 16 10 N -0.70 -24.86 6.50 -513.90 -3.34 -28.20 16 11 C 0.08 3.59 5.62 86.30 0.49 4.08 16 12 C 0.03 1.78 5.23 29.85 0.16 1.94 16 13 C -0.55 -31.77 9.11 25.60 0.23 -31.53 16 14 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 15 C 0.00 0.07 5.46 84.65 0.46 0.53 16 16 N -0.93 -57.34 13.29 21.45 0.28 -57.05 16 17 Si 0.97 44.51 29.54 68.60 2.03 46.53 16 18 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 20 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 21 C -0.15 -3.24 5.48 30.68 0.17 -3.08 16 22 C 0.06 1.30 6.57 72.01 0.47 1.77 16 23 O -0.38 -8.68 9.06 -148.98 -1.35 -10.03 16 24 H 0.05 0.96 7.68 -2.39 -0.02 0.94 16 25 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.06 0.85 6.38 -2.39 -0.02 0.83 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.05 0.89 7.68 -2.39 -0.02 0.87 16 31 H 0.08 1.39 8.14 -2.39 -0.02 1.38 16 32 H 0.08 1.47 6.31 -2.39 -0.02 1.46 16 33 H 0.03 0.74 5.04 -2.38 -0.01 0.73 16 34 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.34 11.73 6.96 -89.69 -0.62 11.10 16 36 H 0.02 0.66 8.14 -2.39 -0.02 0.65 16 37 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 38 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 39 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 40 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 41 H 0.07 1.65 6.58 -2.38 -0.02 1.63 16 42 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.04 0.93 6.50 -2.39 -0.02 0.91 16 44 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -63.98 333.68 1.74 -62.24 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.32 Total: 17.86 kcal Atomic # 6 Polarization: -35.13 SS G_CDS: 3.80 Total: -31.34 kcal Atomic # 7 Polarization: -82.20 SS G_CDS: -3.06 Total: -85.26 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: -1.35 Total: -10.03 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -63.98 1.74 -62.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381170482.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.754 kcal (2) G-P(sol) polarization free energy of solvation -63.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds