Wall clock time and date at job start Mon Mar 30 2020 06:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47108 * 2 1 4 4 C 1.53003 * 109.47397 * 120.00236 * 2 1 3 5 5 H 1.09004 * 109.47688 * 299.98060 * 4 2 1 6 6 C 1.53094 * 109.49280 * 180.02562 * 4 2 1 7 7 C 1.53177 * 109.15691 * 182.48894 * 6 4 2 8 8 H 1.08996 * 109.54640 * 296.93540 * 7 6 4 9 9 C 1.53006 * 109.54578 * 176.76110 * 7 6 4 10 10 N 1.46895 * 109.47374 * 175.17932 * 9 7 6 11 11 C 1.46891 * 111.00390 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47740 * 179.97438 * 11 10 9 13 13 C 1.50694 * 109.47670 * 180.02562 * 12 11 10 14 14 H 1.08008 * 119.99901 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00379 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99689 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00210 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46874 * 0.02562 * 17 15 13 19 19 H 1.48492 * 109.47183 * 120.00243 * 17 15 13 20 20 H 1.48507 * 109.46976 * 240.00525 * 17 15 13 21 21 C 1.53171 * 109.11119 * 56.84952 * 7 6 4 22 22 C 1.53097 * 109.16124 * 303.06454 * 21 7 6 23 23 O 1.42901 * 109.41291 * 57.60962 * 22 21 7 24 24 H 1.09000 * 109.47019 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47001 * 299.99676 * 1 2 3 26 26 H 1.08996 * 109.47399 * 60.00450 * 1 2 3 27 27 H 1.09006 * 109.46773 * 239.99789 * 2 1 3 28 28 H 1.08997 * 109.46816 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.46948 * 300.00020 * 3 2 1 30 30 H 1.08997 * 109.46925 * 60.00278 * 3 2 1 31 31 H 1.08999 * 109.60076 * 62.54393 * 6 4 2 32 32 H 1.09000 * 109.45705 * 302.34739 * 6 4 2 33 33 H 1.09007 * 109.46744 * 295.17611 * 9 7 6 34 34 H 1.08995 * 109.46794 * 55.17856 * 9 7 6 35 35 H 1.00902 * 111.00378 * 56.04213 * 10 9 7 36 36 H 1.09001 * 109.47359 * 300.00191 * 11 10 9 37 37 H 1.09004 * 109.47151 * 59.99758 * 11 10 9 38 38 H 1.09001 * 109.47219 * 300.00727 * 12 11 10 39 39 H 1.09004 * 109.46628 * 59.99888 * 12 11 10 40 40 H 0.97002 * 119.99644 * 179.97438 * 16 15 13 41 41 H 1.09006 * 109.52667 * 62.96805 * 21 7 6 42 42 H 1.09002 * 109.52993 * 183.09906 * 21 7 6 43 43 H 1.08998 * 109.47838 * 177.59022 * 22 21 7 44 44 H 1.08997 * 109.47861 * 297.62181 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6771 -0.2074 2.1393 6 6 3.5710 -0.7210 1.2500 7 6 4.0732 -1.4983 2.4706 8 1 3.7528 -0.9932 3.3817 9 6 5.6011 -1.5727 2.4369 10 7 6.0872 -2.2167 3.6645 11 6 7.5533 -2.3062 3.6670 12 6 8.0211 -2.9803 4.9584 13 6 9.5252 -3.0716 4.9613 14 1 10.0912 -2.6868 4.1257 15 6 10.1790 -3.6462 6.0305 16 7 9.4899 -4.1152 7.0477 17 14 12.0437 -3.7587 6.0343 18 1 12.5780 -3.1627 4.7835 19 1 12.5818 -3.0187 7.2039 20 1 12.4535 -5.1836 6.1187 21 6 3.4905 -2.9145 2.4378 22 6 1.9626 -2.8282 2.3922 23 8 1.5636 -2.0686 1.2495 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 3.1299 1.4424 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9562 0.8900 31 1 3.9364 0.3049 1.2959 32 1 3.9346 -1.1977 0.3397 33 1 5.9175 -2.1550 1.5714 34 1 6.0124 -0.5657 2.3676 35 1 5.6694 -3.1273 3.7850 36 1 7.8830 -2.8937 2.8101 37 1 7.9786 -1.3044 3.6059 38 1 7.6914 -2.3926 5.8151 39 1 7.5958 -3.9821 5.0199 40 1 9.9499 -4.5199 7.7997 41 1 3.8523 -3.4370 1.5522 42 1 3.7991 -3.4563 3.3319 43 1 1.5437 -3.8323 2.3256 44 1 1.5989 -2.3418 3.2973 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381170483.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:02 Heat of formation + Delta-G solvation = -104.458385 kcal Electronic energy + Delta-G solvation = -19208.762582 eV Core-core repulsion = 16351.588481 eV Total energy + Delta-G solvation = -2857.174100 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.78729 -37.93311 -36.26016 -35.58552 -34.22223 -31.18407 -31.05751 -28.19460 -27.49376 -25.71371 -24.53172 -23.37947 -22.42887 -21.13786 -20.69600 -18.52521 -17.42402 -17.08586 -16.94180 -16.47710 -15.91348 -15.47078 -15.23442 -14.96485 -14.88099 -14.50820 -14.21967 -14.10920 -13.72478 -13.39533 -13.27292 -12.97870 -12.87735 -12.65290 -12.51223 -12.40876 -12.13641 -12.08245 -11.94337 -11.75578 -11.64068 -11.48433 -11.31854 -11.22415 -10.98594 -10.58655 -10.33514 -9.31335 -8.22066 -6.33716 1.39550 1.40108 1.53484 2.39369 2.83106 3.11370 3.25926 3.72013 3.79778 3.90846 3.96583 4.14780 4.17238 4.34559 4.36962 4.44828 4.46657 4.53518 4.59358 4.68074 4.75566 4.80743 4.83650 4.86493 4.90028 4.97279 5.04045 5.04303 5.10463 5.12566 5.19460 5.29025 5.38080 5.43062 5.48120 5.49344 5.64942 5.76800 6.11878 6.25996 6.34500 6.51751 6.83581 7.35745 8.90383 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.049259 B = 0.003104 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.289627 B = 9017.183001 C = 9403.770501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.087 4.087 3 C -0.146 4.146 4 C 0.095 3.905 5 H 0.057 0.943 6 C -0.138 4.138 7 C -0.081 4.081 8 H 0.073 0.927 9 C 0.068 3.932 10 N -0.697 5.697 11 C 0.083 3.917 12 C 0.032 3.968 13 C -0.545 4.545 14 H 0.060 0.940 15 C 0.000 4.000 16 N -0.932 5.932 17 Si 0.968 3.032 18 H -0.262 1.262 19 H -0.277 1.277 20 H -0.277 1.277 21 C -0.152 4.152 22 C 0.065 3.935 23 O -0.393 6.393 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.025 0.975 34 H 0.069 0.931 35 H 0.338 0.662 36 H 0.017 0.983 37 H 0.057 0.943 38 H -0.005 1.005 39 H -0.009 1.009 40 H 0.264 0.736 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.104 0.896 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.497 8.123 -14.428 24.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.106 4.106 3 C -0.204 4.204 4 C 0.038 3.962 5 H 0.075 0.925 6 C -0.176 4.176 7 C -0.100 4.100 8 H 0.091 0.909 9 C -0.061 4.061 10 N -0.328 5.328 11 C -0.046 4.046 12 C -0.006 4.006 13 C -0.584 4.584 14 H 0.078 0.922 15 C -0.198 4.198 16 N -0.572 5.572 17 Si 0.792 3.208 18 H -0.186 1.186 19 H -0.203 1.203 20 H -0.202 1.202 21 C -0.190 4.190 22 C -0.012 4.012 23 O -0.312 6.312 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.088 0.912 35 H 0.156 0.844 36 H 0.035 0.965 37 H 0.076 0.924 38 H 0.013 0.987 39 H 0.009 0.991 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.122 0.878 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.606 8.559 -14.057 24.101 hybrid contribution 1.364 -1.023 0.080 1.707 sum -16.242 7.536 -13.978 22.715 Atomic orbital electron populations 1.21739 0.94341 1.01767 1.01976 1.21107 0.96742 0.96241 0.96476 1.21869 1.01510 0.94252 1.02733 1.22217 0.92515 0.82812 0.98702 0.92521 1.22239 0.96146 1.01437 0.97774 1.21152 0.93583 0.96292 0.98986 0.90871 1.21991 0.95039 0.99157 0.89949 1.60545 1.06780 1.27490 1.38026 1.21781 0.86654 0.99167 0.97006 1.18921 0.94731 0.93998 0.92914 1.21641 0.93204 1.39066 1.04439 0.92199 1.25994 1.03976 0.94841 0.95002 1.70115 1.37614 1.40729 1.08711 0.85353 0.78947 0.77987 0.78467 1.18591 1.20266 1.20243 1.22241 0.97033 0.97135 1.02543 1.22585 0.93342 0.96778 0.88477 1.87873 1.74797 1.24071 1.44473 0.93069 0.92716 0.91737 0.91099 0.92039 0.91198 0.92200 0.89542 0.91509 0.95681 0.91237 0.84408 0.96514 0.92401 0.98702 0.99067 0.92690 0.91804 0.90908 0.87815 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.05 71.98 0.65 -1.43 16 2 C -0.09 -1.37 2.72 -10.79 -0.03 -1.40 16 3 C -0.15 -1.86 8.84 71.98 0.64 -1.22 16 4 C 0.10 1.79 2.22 30.63 0.07 1.86 16 5 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 6 C -0.14 -2.69 4.28 30.68 0.13 -2.56 16 7 C -0.08 -1.90 2.48 -10.68 -0.03 -1.92 16 8 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 9 C 0.07 1.92 5.15 86.31 0.44 2.36 16 10 N -0.70 -25.07 6.50 -513.90 -3.34 -28.41 16 11 C 0.08 3.57 5.62 86.30 0.49 4.06 16 12 C 0.03 1.73 5.23 29.85 0.16 1.89 16 13 C -0.55 -31.60 9.11 25.60 0.23 -31.36 16 14 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 15 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 16 N -0.93 -57.37 13.29 21.45 0.28 -57.09 16 17 Si 0.97 44.59 29.54 68.60 2.03 46.62 16 18 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 21 C -0.15 -3.40 5.12 30.68 0.16 -3.24 16 22 C 0.06 1.29 6.84 72.01 0.49 1.79 16 23 O -0.39 -8.62 9.73 -148.98 -1.45 -10.07 16 24 H 0.05 0.88 7.68 -2.39 -0.02 0.86 16 25 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 28 H 0.06 0.78 6.49 -2.39 -0.02 0.76 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.09 1.51 6.58 -2.39 -0.02 1.49 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 34 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.34 11.81 7.07 -89.69 -0.63 11.18 16 36 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.06 2.48 8.14 -2.38 -0.02 2.46 16 38 H -0.01 -0.33 8.14 -2.39 -0.02 -0.34 16 39 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 40 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 41 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 42 H 0.07 1.71 6.84 -2.39 -0.02 1.70 16 43 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -64.37 341.64 1.68 -62.69 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 0.30 Total: 17.00 kcal Atomic # 6 Polarization: -34.60 SS G_CDS: 3.86 Total: -30.74 kcal Atomic # 7 Polarization: -82.44 SS G_CDS: -3.06 Total: -85.50 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: -1.45 Total: -10.07 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -64.37 1.68 -62.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381170483.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.764 kcal (2) G-P(sol) polarization free energy of solvation -64.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds