Wall clock time and date at job start Mon Mar 30 2020 06:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46897 * 2 1 4 4 C 1.53000 * 109.47434 * 119.99706 * 2 1 3 5 5 H 1.09000 * 109.48964 * 59.97225 * 4 2 1 6 6 C 1.53092 * 109.48347 * 180.02562 * 4 2 1 7 7 C 1.53174 * 109.16408 * 177.59247 * 6 4 2 8 8 H 1.09003 * 109.54370 * 62.97787 * 7 6 4 9 9 C 1.53004 * 109.54413 * 183.15050 * 7 6 4 10 10 N 1.46894 * 109.47161 * 184.82031 * 9 7 6 11 11 C 1.46898 * 110.99937 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47342 * 180.02562 * 11 10 9 13 13 C 1.50695 * 109.47088 * 180.02562 * 12 11 10 14 14 H 1.07995 * 120.00496 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99572 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00327 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99951 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 59.99744 * 17 15 13 19 19 H 1.48503 * 109.47261 * 299.99924 * 17 15 13 20 20 H 1.48500 * 109.47454 * 179.97438 * 17 15 13 21 21 C 1.53175 * 109.11101 * 303.06558 * 7 6 4 22 22 C 1.53104 * 109.16065 * 56.84450 * 21 7 6 23 23 O 1.42900 * 109.47967 * 299.94762 * 4 2 1 24 24 H 1.09004 * 109.47115 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47190 * 299.99765 * 1 2 3 26 26 H 1.08994 * 109.47306 * 60.00083 * 1 2 3 27 27 H 1.09001 * 109.47190 * 240.00235 * 2 1 3 28 28 H 1.08996 * 109.47072 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47036 * 299.99572 * 3 2 1 30 30 H 1.08992 * 109.47229 * 60.00135 * 3 2 1 31 31 H 1.09002 * 109.51951 * 57.68514 * 6 4 2 32 32 H 1.09003 * 109.57083 * 297.52720 * 6 4 2 33 33 H 1.09005 * 109.46750 * 64.82606 * 9 7 6 34 34 H 1.08993 * 109.46980 * 304.82521 * 9 7 6 35 35 H 1.00896 * 111.00538 * 303.96097 * 10 9 7 36 36 H 1.09002 * 109.47032 * 60.00278 * 11 10 9 37 37 H 1.09001 * 109.47520 * 300.00127 * 11 10 9 38 38 H 1.09002 * 109.46935 * 60.00090 * 12 11 10 39 39 H 1.08998 * 109.47061 * 300.00883 * 12 11 10 40 40 H 0.97006 * 119.99995 * 359.97438 * 16 15 13 41 41 H 1.08999 * 109.52721 * 176.84126 * 21 7 6 42 42 H 1.08999 * 109.51928 * 297.03282 * 21 7 6 43 43 H 1.08991 * 109.48900 * 182.49866 * 22 21 7 44 44 H 1.09003 * 109.41172 * 62.51131 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.6765 -1.7488 1.2499 6 6 3.5710 -0.7207 1.2498 7 6 4.0735 -1.3909 2.5322 8 1 3.7527 -2.4325 2.5492 9 6 5.6015 -1.3252 2.5791 10 7 6.0878 -2.0679 3.7494 11 6 7.5542 -2.0270 3.8267 12 6 8.0222 -2.8100 5.0551 13 6 9.5264 -2.7675 5.1347 14 1 10.0921 -2.2350 4.3846 15 6 10.1806 -3.4086 6.1654 16 7 9.4918 -4.0575 7.0786 17 14 12.0451 -3.3553 6.2646 18 1 12.4949 -1.9445 6.3767 19 1 12.6236 -3.9633 5.0394 20 1 12.4994 -4.1154 7.4567 21 6 3.4916 -0.6557 3.7434 22 6 1.9637 -0.6567 3.6455 23 8 1.5649 -0.0469 2.4161 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 3.9349 0.3059 1.2085 32 1 3.9366 -1.2720 0.3834 33 1 5.9183 -0.2848 2.6517 34 1 6.0121 -1.7677 1.6715 35 1 5.6707 -1.7179 4.5988 36 1 7.8850 -0.9916 3.9077 37 1 7.9781 -2.4747 2.9278 38 1 7.6914 -3.8454 4.9737 39 1 7.5982 -2.3629 5.9542 40 1 8.5235 -4.0848 7.0274 41 1 3.7996 -1.1609 4.6588 42 1 3.8539 0.3723 3.7541 43 1 1.5454 -0.0965 4.4817 44 1 1.5994 -1.6835 3.6773 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381170484.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:05 Heat of formation + Delta-G solvation = -88.915867 kcal Electronic energy + Delta-G solvation = -19307.889646 eV Core-core repulsion = 16451.389520 eV Total energy + Delta-G solvation = -2856.500126 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.98799 -36.72353 -35.33690 -34.15231 -32.62102 -30.24533 -29.20774 -27.38044 -26.24890 -23.97584 -23.49669 -22.42084 -20.90557 -20.00561 -19.94371 -16.74629 -16.46343 -16.01082 -15.68252 -15.11096 -14.75934 -14.35428 -14.09238 -13.79836 -13.65793 -13.37623 -13.33547 -12.78315 -12.48960 -12.24159 -12.08987 -11.86995 -11.70834 -11.52993 -11.28400 -11.05997 -11.00009 -10.86753 -10.73819 -10.46690 -10.26207 -10.14959 -10.10698 -9.78902 -9.44197 -8.57418 -8.31988 -7.91959 -6.35578 -4.04361 3.44142 3.46408 3.63508 3.65171 4.30623 4.54645 4.58478 4.69909 4.78975 4.82378 4.84524 4.95445 5.12641 5.20846 5.32500 5.40450 5.42462 5.46727 5.49876 5.56090 5.59596 5.69653 5.73778 5.76845 5.81940 5.88464 5.92782 5.98636 6.08824 6.12992 6.19776 6.22379 6.27941 6.39536 6.82221 7.12867 7.25730 7.49685 7.68005 7.85390 8.25063 8.47094 8.89545 9.68173 11.05625 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.053596 B = 0.003103 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.303414 B = 9022.281595 C = 9309.592348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 C -0.146 4.146 4 C 0.097 3.903 5 H 0.056 0.944 6 C -0.146 4.146 7 C -0.087 4.087 8 H 0.079 0.921 9 C 0.065 3.935 10 N -0.694 5.694 11 C 0.072 3.928 12 C 0.013 3.987 13 C -0.604 4.604 14 H 0.047 0.953 15 C 0.015 3.985 16 N -0.912 5.912 17 Si 1.070 2.930 18 H -0.288 1.288 19 H -0.288 1.288 20 H -0.282 1.282 21 C -0.153 4.153 22 C 0.064 3.936 23 O -0.377 6.377 24 H 0.051 0.949 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.079 0.921 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.023 0.977 34 H 0.067 0.933 35 H 0.334 0.666 36 H 0.016 0.984 37 H 0.059 0.941 38 H 0.016 0.984 39 H 0.004 0.996 40 H 0.269 0.731 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.091 0.909 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.736 8.910 -12.963 23.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 C -0.203 4.203 4 C 0.039 3.961 5 H 0.074 0.926 6 C -0.184 4.184 7 C -0.106 4.106 8 H 0.097 0.903 9 C -0.064 4.064 10 N -0.325 5.325 11 C -0.056 4.056 12 C -0.025 4.025 13 C -0.642 4.642 14 H 0.066 0.934 15 C -0.189 4.189 16 N -0.549 5.549 17 Si 0.898 3.102 18 H -0.215 1.215 19 H -0.214 1.214 20 H -0.207 1.207 21 C -0.191 4.191 22 C -0.013 4.013 23 O -0.296 6.296 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.097 0.903 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.041 0.959 34 H 0.086 0.914 35 H 0.152 0.848 36 H 0.034 0.966 37 H 0.078 0.922 38 H 0.034 0.966 39 H 0.022 0.978 40 H 0.080 0.920 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.109 0.891 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -16.552 7.956 -12.399 22.158 hybrid contribution -0.886 1.183 -0.605 1.597 sum -17.438 9.139 -13.004 23.594 Atomic orbital electron populations 1.21770 0.94762 1.01597 1.02006 1.21153 0.96413 0.97087 0.95956 1.21824 1.01027 0.95576 1.01869 1.22092 0.92862 0.95327 0.85838 0.92627 1.22301 0.95855 1.02047 0.98190 1.21220 0.95338 0.99981 0.94056 0.90309 1.21928 0.93492 0.95687 0.95325 1.60623 1.08840 1.57979 1.05040 1.22003 0.84404 0.98119 1.01047 1.19193 0.96419 0.95298 0.91570 1.21999 0.91586 1.37235 1.13428 0.93428 1.25854 1.07061 0.93305 0.92678 1.70771 1.09242 1.40017 1.34822 0.83537 0.74231 0.76259 0.76181 1.21502 1.21421 1.20724 1.22265 0.96215 1.01356 0.99255 1.22533 0.94153 0.97961 0.86641 1.87882 1.74616 1.53726 1.13360 0.93022 0.91804 0.92937 0.90295 0.92514 0.93108 0.91818 0.90738 0.90988 0.95896 0.91411 0.84829 0.96562 0.92228 0.96560 0.97811 0.92013 0.90416 0.91397 0.89060 0.93297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.05 37.16 0.34 -0.81 16 2 C -0.09 -0.75 2.81 -90.62 -0.25 -1.00 16 3 C -0.15 -1.25 8.70 37.16 0.32 -0.92 16 4 C 0.10 0.95 2.38 -26.68 -0.06 0.89 16 5 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 6 C -0.15 -1.51 4.42 -26.59 -0.12 -1.62 16 7 C -0.09 -1.05 2.48 -90.44 -0.22 -1.27 16 8 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 9 C 0.07 0.96 5.15 -3.83 -0.02 0.94 16 10 N -0.69 -12.50 6.50 -113.78 -0.74 -13.24 16 11 C 0.07 1.58 5.62 -3.82 -0.02 1.56 16 12 C 0.01 0.33 4.54 -27.88 -0.13 0.21 16 13 C -0.60 -17.65 9.11 -34.44 -0.31 -17.97 16 14 H 0.05 1.36 7.74 -52.49 -0.41 0.96 16 15 C 0.01 0.44 5.46 -17.82 -0.10 0.34 16 16 N -0.91 -28.50 13.65 55.43 0.76 -27.75 16 17 Si 1.07 25.67 29.90 -169.99 -5.08 20.59 16 18 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 C -0.15 -1.74 5.12 -26.59 -0.14 -1.88 16 22 C 0.06 0.65 6.84 37.21 0.25 0.91 16 23 O -0.38 -4.18 9.06 -35.23 -0.32 -4.50 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.57 7.68 -51.93 -0.40 0.17 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.49 6.38 -51.93 -0.33 0.16 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.61 7.68 -51.93 -0.40 0.21 16 31 H 0.07 0.79 6.31 -51.93 -0.33 0.47 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.33 5.77 7.07 -39.29 -0.28 5.49 16 36 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.02 0.45 8.01 -51.93 -0.42 0.04 16 39 H 0.00 0.10 8.01 -51.93 -0.42 -0.32 16 40 H 0.27 8.40 7.22 -40.82 -0.29 8.10 16 41 H 0.08 0.91 6.84 -51.93 -0.36 0.56 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 339.06 15.07 5.11 5.11 Total: -1.00 -31.04 339.06 -9.07 -40.11 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -8.34 Total: 0.32 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: -0.46 Total: -20.64 kcal Atomic # 7 Polarization: -41.00 SS G_CDS: 0.02 Total: -40.99 kcal Atomic # 8 Polarization: -4.18 SS G_CDS: -0.32 Total: -4.50 kcal Atomic # 14 Polarization: 25.67 SS G_CDS: -5.08 Total: 20.59 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.04 -9.07 -40.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381170484.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.802 kcal (2) G-P(sol) polarization free energy of solvation -31.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds