Wall clock time and date at job start Mon Mar 30 2020 06:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46897 * 2 1 4 4 C 1.53000 * 109.47434 * 119.99706 * 2 1 3 5 5 H 1.09000 * 109.48964 * 59.97225 * 4 2 1 6 6 C 1.53092 * 109.48347 * 180.02562 * 4 2 1 7 7 C 1.53174 * 109.16408 * 177.59247 * 6 4 2 8 8 H 1.09003 * 109.54370 * 62.97787 * 7 6 4 9 9 C 1.53004 * 109.54413 * 183.15050 * 7 6 4 10 10 N 1.46894 * 109.47161 * 184.82031 * 9 7 6 11 11 C 1.46898 * 110.99937 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47342 * 180.02562 * 11 10 9 13 13 C 1.50695 * 109.47088 * 180.02562 * 12 11 10 14 14 H 1.07995 * 120.00496 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99572 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00327 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99951 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 59.99744 * 17 15 13 19 19 H 1.48503 * 109.47261 * 299.99924 * 17 15 13 20 20 H 1.48500 * 109.47454 * 179.97438 * 17 15 13 21 21 C 1.53175 * 109.11101 * 303.06558 * 7 6 4 22 22 C 1.53104 * 109.16065 * 56.84450 * 21 7 6 23 23 O 1.42900 * 109.47967 * 299.94762 * 4 2 1 24 24 H 1.09004 * 109.47115 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47190 * 299.99765 * 1 2 3 26 26 H 1.08994 * 109.47306 * 60.00083 * 1 2 3 27 27 H 1.09001 * 109.47190 * 240.00235 * 2 1 3 28 28 H 1.08996 * 109.47072 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47036 * 299.99572 * 3 2 1 30 30 H 1.08992 * 109.47229 * 60.00135 * 3 2 1 31 31 H 1.09002 * 109.51951 * 57.68514 * 6 4 2 32 32 H 1.09003 * 109.57083 * 297.52720 * 6 4 2 33 33 H 1.09005 * 109.46750 * 64.82606 * 9 7 6 34 34 H 1.08993 * 109.46980 * 304.82521 * 9 7 6 35 35 H 1.00896 * 111.00538 * 303.96097 * 10 9 7 36 36 H 1.09002 * 109.47032 * 60.00278 * 11 10 9 37 37 H 1.09001 * 109.47520 * 300.00127 * 11 10 9 38 38 H 1.09002 * 109.46935 * 60.00090 * 12 11 10 39 39 H 1.08998 * 109.47061 * 300.00883 * 12 11 10 40 40 H 0.97006 * 119.99995 * 359.97438 * 16 15 13 41 41 H 1.08999 * 109.52721 * 176.84126 * 21 7 6 42 42 H 1.08999 * 109.51928 * 297.03282 * 21 7 6 43 43 H 1.08991 * 109.48900 * 182.49866 * 22 21 7 44 44 H 1.09003 * 109.41172 * 62.51131 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.6765 -1.7488 1.2499 6 6 3.5710 -0.7207 1.2498 7 6 4.0735 -1.3909 2.5322 8 1 3.7527 -2.4325 2.5492 9 6 5.6015 -1.3252 2.5791 10 7 6.0878 -2.0679 3.7494 11 6 7.5542 -2.0270 3.8267 12 6 8.0222 -2.8100 5.0551 13 6 9.5264 -2.7675 5.1347 14 1 10.0921 -2.2350 4.3846 15 6 10.1806 -3.4086 6.1654 16 7 9.4918 -4.0575 7.0786 17 14 12.0451 -3.3553 6.2646 18 1 12.4949 -1.9445 6.3767 19 1 12.6236 -3.9633 5.0394 20 1 12.4994 -4.1154 7.4567 21 6 3.4916 -0.6557 3.7434 22 6 1.9637 -0.6567 3.6455 23 8 1.5649 -0.0469 2.4161 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 3.9349 0.3059 1.2085 32 1 3.9366 -1.2720 0.3834 33 1 5.9183 -0.2848 2.6517 34 1 6.0121 -1.7677 1.6715 35 1 5.6707 -1.7179 4.5988 36 1 7.8850 -0.9916 3.9077 37 1 7.9781 -2.4747 2.9278 38 1 7.6914 -3.8454 4.9737 39 1 7.5982 -2.3629 5.9542 40 1 8.5235 -4.0848 7.0274 41 1 3.7996 -1.1609 4.6588 42 1 3.8539 0.3723 3.7541 43 1 1.5454 -0.0965 4.4817 44 1 1.5994 -1.6835 3.6773 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381170484.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:04 Heat of formation + Delta-G solvation = -107.858228 kcal Electronic energy + Delta-G solvation = -19308.711048 eV Core-core repulsion = 16451.389520 eV Total energy + Delta-G solvation = -2857.321528 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.84814 -38.06873 -36.21983 -35.77582 -34.28945 -31.05207 -30.97777 -28.07336 -27.56733 -25.62527 -24.55595 -23.60709 -22.77128 -20.97437 -20.71268 -18.93064 -17.29250 -17.15429 -16.79077 -16.08270 -15.86157 -15.67048 -15.47239 -15.24751 -14.94810 -14.51810 -14.37866 -14.11175 -13.91867 -13.51556 -13.17526 -12.86687 -12.71979 -12.66787 -12.61532 -12.47411 -12.11747 -12.00003 -11.85954 -11.78621 -11.73636 -11.53184 -11.30142 -11.05376 -10.76407 -10.57166 -10.34676 -9.42721 -8.72512 -6.43145 1.51701 1.60527 1.80118 2.55056 2.85839 3.13284 3.17085 3.67759 3.74530 3.87145 3.92714 4.10226 4.14342 4.25178 4.32318 4.35536 4.41511 4.48360 4.51730 4.64614 4.71494 4.76020 4.82998 4.83642 4.85660 4.90037 4.94806 5.04109 5.08571 5.08761 5.16170 5.21010 5.24688 5.35630 5.39037 5.48203 5.54969 5.87338 6.10098 6.15529 6.32793 6.37988 6.55968 7.39665 8.68869 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.053596 B = 0.003103 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.303414 B = 9022.281595 C = 9309.592348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.088 4.088 3 C -0.143 4.143 4 C 0.095 3.905 5 H 0.057 0.943 6 C -0.140 4.140 7 C -0.080 4.080 8 H 0.072 0.928 9 C 0.068 3.932 10 N -0.697 5.697 11 C 0.089 3.911 12 C 0.016 3.984 13 C -0.623 4.623 14 H 0.051 0.949 15 C -0.039 4.039 16 N -0.936 5.936 17 Si 1.120 2.880 18 H -0.268 1.268 19 H -0.268 1.268 20 H -0.282 1.282 21 C -0.151 4.151 22 C 0.065 3.935 23 O -0.387 6.387 24 H 0.054 0.946 25 H 0.050 0.950 26 H 0.063 0.937 27 H 0.092 0.908 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.025 0.975 34 H 0.069 0.931 35 H 0.338 0.662 36 H 0.017 0.983 37 H 0.057 0.943 38 H -0.008 1.008 39 H -0.012 1.012 40 H 0.256 0.744 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.103 0.897 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.697 9.615 -14.334 24.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.106 4.106 3 C -0.201 4.201 4 C 0.037 3.963 5 H 0.075 0.925 6 C -0.178 4.178 7 C -0.099 4.099 8 H 0.091 0.909 9 C -0.061 4.061 10 N -0.328 5.328 11 C -0.040 4.040 12 C -0.021 4.021 13 C -0.662 4.662 14 H 0.070 0.930 15 C -0.236 4.236 16 N -0.573 5.573 17 Si 0.940 3.060 18 H -0.193 1.193 19 H -0.193 1.193 20 H -0.208 1.208 21 C -0.189 4.189 22 C -0.012 4.012 23 O -0.306 6.306 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.111 0.889 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.044 0.956 34 H 0.087 0.913 35 H 0.156 0.844 36 H 0.035 0.965 37 H 0.076 0.924 38 H 0.010 0.990 39 H 0.006 0.994 40 H 0.065 0.935 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.121 0.879 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.548 8.676 -13.792 23.224 hybrid contribution -0.965 0.968 -0.194 1.380 sum -17.513 9.644 -13.986 24.399 Atomic orbital electron populations 1.21741 0.94367 1.01810 1.01950 1.21197 0.96747 0.96962 0.95676 1.21797 1.00861 0.95643 1.01764 1.22190 0.92378 0.95624 0.86093 0.92476 1.22258 0.96297 1.01795 0.97438 1.21143 0.93344 0.99985 0.95457 0.90932 1.22000 0.95245 0.95233 0.93672 1.60540 1.06533 1.59226 1.06531 1.21643 0.86790 0.97086 0.98450 1.19089 0.95428 0.94440 0.93151 1.22443 0.93104 1.37062 1.13541 0.93036 1.27517 1.11733 0.92285 0.92095 1.70911 1.08578 1.41729 1.36094 0.82910 0.68604 0.77538 0.76905 1.19301 1.19292 1.20752 1.22232 0.97197 1.00803 0.98632 1.22568 0.93183 0.98487 0.86936 1.87885 1.74727 1.54162 1.13821 0.92686 0.93062 0.91784 0.88943 0.92708 0.91933 0.93198 0.90905 0.89969 0.95628 0.91272 0.84389 0.96521 0.92417 0.98991 0.99380 0.93506 0.91088 0.91833 0.87883 0.92860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.05 71.98 0.65 -1.36 16 2 C -0.09 -1.31 2.81 -10.79 -0.03 -1.35 16 3 C -0.14 -2.21 8.70 71.98 0.63 -1.59 16 4 C 0.09 1.71 2.38 30.62 0.07 1.79 16 5 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 6 C -0.14 -2.66 4.42 30.68 0.14 -2.52 16 7 C -0.08 -1.84 2.48 -10.68 -0.03 -1.87 16 8 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 9 C 0.07 1.90 5.15 86.31 0.44 2.35 16 10 N -0.70 -24.90 6.50 -513.89 -3.34 -28.24 16 11 C 0.09 3.88 5.62 86.31 0.49 4.36 16 12 C 0.02 0.88 4.54 29.85 0.14 1.02 16 13 C -0.62 -36.60 9.11 25.60 0.23 -36.36 16 14 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 15 C -0.04 -2.30 5.46 84.66 0.46 -1.84 16 16 N -0.94 -59.32 13.65 21.45 0.29 -59.03 16 17 Si 1.12 50.78 29.90 68.60 2.05 52.83 16 18 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 19 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 21 C -0.15 -3.30 5.12 30.69 0.16 -3.14 16 22 C 0.06 1.25 6.84 72.02 0.49 1.75 16 23 O -0.39 -8.09 9.06 -148.98 -1.35 -9.44 16 24 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 25 H 0.05 0.86 7.68 -2.39 -0.02 0.84 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 27 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.05 0.86 6.38 -2.39 -0.02 0.84 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.05 0.90 7.68 -2.39 -0.02 0.89 16 31 H 0.07 1.43 6.31 -2.39 -0.02 1.42 16 32 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.03 0.72 8.14 -2.38 -0.02 0.70 16 34 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.34 11.67 7.07 -89.70 -0.63 11.04 16 36 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.06 2.51 8.14 -2.39 -0.02 2.50 16 38 H -0.01 -0.48 8.01 -2.39 -0.02 -0.50 16 39 H -0.01 -0.68 8.01 -2.39 -0.02 -0.70 16 40 H 0.26 16.43 7.22 -92.70 -0.67 15.76 16 41 H 0.07 1.64 6.84 -2.39 -0.02 1.62 16 42 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -66.02 339.06 1.90 -64.12 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: 0.40 Total: 18.51 kcal Atomic # 6 Polarization: -42.60 SS G_CDS: 3.84 Total: -38.76 kcal Atomic # 7 Polarization: -84.22 SS G_CDS: -3.05 Total: -87.27 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: -1.35 Total: -9.44 kcal Atomic # 14 Polarization: 50.78 SS G_CDS: 2.05 Total: 52.83 kcal Total: -66.02 1.90 -64.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381170484.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.737 kcal (2) G-P(sol) polarization free energy of solvation -66.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds