Wall clock time and date at job start Mon Mar 30 2020 06:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47263 * 2 1 4 4 C 1.52995 * 109.47177 * 120.00114 * 2 1 3 5 5 H 1.08998 * 109.48107 * 299.97885 * 4 2 1 6 6 C 1.53095 * 109.48236 * 179.97438 * 4 2 1 7 7 C 1.53180 * 109.16506 * 182.40833 * 6 4 2 8 8 H 1.09000 * 109.61149 * 176.89378 * 7 6 4 9 9 C 1.53002 * 109.54119 * 297.11162 * 7 6 4 10 10 N 1.46897 * 109.47010 * 184.55600 * 9 7 6 11 11 C 1.46893 * 111.00104 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47285 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47211 * 179.97438 * 12 11 10 14 14 H 1.08002 * 119.99761 * 359.97438 * 13 12 11 15 15 C 1.37871 * 119.99694 * 180.27574 * 13 12 11 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 12 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 12 18 18 H 1.48504 * 109.47209 * 89.99886 * 17 15 13 19 19 H 1.48501 * 109.47358 * 209.99377 * 17 15 13 20 20 H 1.48496 * 109.47341 * 329.99989 * 17 15 13 21 21 C 1.53174 * 109.03398 * 56.98074 * 7 6 4 22 22 C 1.53090 * 109.16640 * 303.01747 * 21 7 6 23 23 O 1.42901 * 109.48050 * 60.00102 * 4 2 1 24 24 H 1.09005 * 109.47202 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47441 * 300.00096 * 1 2 3 26 26 H 1.09007 * 109.47517 * 60.00239 * 1 2 3 27 27 H 1.09002 * 109.47268 * 240.00160 * 2 1 3 28 28 H 1.08993 * 109.47426 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.46839 * 300.00556 * 3 2 1 30 30 H 1.09002 * 109.46848 * 59.99903 * 3 2 1 31 31 H 1.09004 * 109.52107 * 62.50190 * 6 4 2 32 32 H 1.09004 * 109.52113 * 302.31438 * 6 4 2 33 33 H 1.09000 * 109.46515 * 64.55848 * 9 7 6 34 34 H 1.09001 * 109.47055 * 304.55890 * 9 7 6 35 35 H 1.00908 * 111.00037 * 303.95605 * 10 9 7 36 36 H 1.09000 * 109.47823 * 59.99694 * 11 10 9 37 37 H 1.09007 * 109.47029 * 299.99462 * 11 10 9 38 38 H 1.09000 * 109.47211 * 59.98987 * 12 11 10 39 39 H 1.09007 * 109.46376 * 299.99529 * 12 11 10 40 40 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 41 41 H 1.08998 * 109.52209 * 62.92694 * 21 7 6 42 42 H 1.09001 * 109.51975 * 183.05166 * 21 7 6 43 43 H 1.08998 * 109.48186 * 177.59152 * 22 21 7 44 44 H 1.09002 * 109.47993 * 297.62180 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6770 -0.2074 2.1393 6 6 3.5709 -0.7220 1.2491 7 6 4.0735 -1.4975 2.4707 8 1 5.1620 -1.5498 2.4485 9 6 3.6212 -0.7883 3.7488 10 7 4.1945 -1.4706 4.9165 11 6 3.7803 -0.8161 6.1646 12 6 4.3961 -1.5529 7.3557 13 6 3.9717 -0.8810 8.6361 14 1 3.3274 -0.0148 8.6035 15 6 4.4108 -1.3684 9.8487 16 7 5.1956 -2.4230 9.8884 17 14 3.8910 -0.5309 11.4355 18 1 2.6303 -1.1420 11.9278 19 1 4.9554 -0.7013 12.4569 20 1 3.6740 0.9163 11.1833 21 6 3.4915 -2.9140 2.4373 22 6 1.9637 -2.8287 2.3915 23 8 1.5637 -2.0686 1.2494 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 3.9356 0.3043 1.2938 32 1 3.9349 -1.1996 0.3394 33 1 2.5333 -0.8121 3.8118 34 1 3.9615 0.2471 3.7296 35 1 3.9462 -2.4487 4.9218 36 1 2.6935 -0.8403 6.2444 37 1 4.1214 0.2192 6.1625 38 1 5.4829 -1.5283 7.2757 39 1 4.0553 -2.5883 7.3580 40 1 5.5048 -2.7657 10.7415 41 1 3.8539 -3.4358 1.5516 42 1 3.8004 -3.4558 3.3312 43 1 1.5454 -3.8330 2.3245 44 1 1.5995 -2.3428 3.2968 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381170485.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:07 Heat of formation + Delta-G solvation = -81.830499 kcal Electronic energy + Delta-G solvation = -19622.365742 eV Core-core repulsion = 16766.172861 eV Total energy + Delta-G solvation = -2856.192881 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.12695 -36.48896 -35.37607 -33.93012 -32.46186 -30.22136 -29.29634 -27.37880 -25.88159 -24.29501 -23.74655 -22.91870 -20.56862 -20.39883 -18.83800 -16.64570 -16.33002 -16.21046 -15.59580 -14.85823 -14.55168 -14.41315 -14.27299 -13.92956 -13.68558 -13.25104 -13.04689 -12.71782 -12.51949 -12.31851 -12.09439 -11.76594 -11.54018 -11.32696 -11.26551 -11.08028 -10.96352 -10.94465 -10.90306 -10.52758 -10.38933 -10.17468 -9.98871 -9.35964 -9.29957 -9.14751 -8.35667 -7.79985 -6.00164 -4.02863 3.31642 3.37845 3.41290 3.66272 4.41693 4.48834 4.60339 4.75756 4.79878 4.94404 4.97536 5.05697 5.13048 5.20868 5.29866 5.35746 5.41518 5.47140 5.56656 5.58524 5.66338 5.70829 5.75632 5.80613 5.86201 5.90411 6.04371 6.05939 6.15244 6.20668 6.22967 6.30562 6.34270 6.43978 6.97130 7.20979 7.47750 7.71956 7.82377 7.95364 8.07836 8.43149 9.04362 9.60990 11.11287 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.032570 B = 0.003644 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.476873 B = 7681.982432 C = 7962.959589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 C -0.149 4.149 4 C 0.093 3.907 5 H 0.059 0.941 6 C -0.143 4.143 7 C -0.089 4.089 8 H 0.083 0.917 9 C 0.059 3.941 10 N -0.691 5.691 11 C 0.065 3.935 12 C 0.025 3.975 13 C -0.522 4.522 14 H 0.054 0.946 15 C 0.058 3.942 16 N -0.893 5.893 17 Si 0.893 3.107 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.152 4.152 22 C 0.059 3.941 23 O -0.379 6.379 24 H 0.062 0.938 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.075 0.925 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.024 0.976 34 H 0.067 0.933 35 H 0.334 0.666 36 H 0.013 0.987 37 H 0.057 0.943 38 H 0.025 0.975 39 H 0.013 0.987 40 H 0.261 0.739 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.091 0.909 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.505 2.978 -20.627 21.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 C -0.206 4.206 4 C 0.035 3.965 5 H 0.077 0.923 6 C -0.181 4.181 7 C -0.108 4.108 8 H 0.102 0.898 9 C -0.071 4.071 10 N -0.322 5.322 11 C -0.063 4.063 12 C -0.012 4.012 13 C -0.561 4.561 14 H 0.072 0.928 15 C -0.144 4.144 16 N -0.533 5.533 17 Si 0.721 3.279 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.190 4.190 22 C -0.018 4.018 23 O -0.299 6.299 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.042 0.958 34 H 0.085 0.915 35 H 0.152 0.848 36 H 0.032 0.968 37 H 0.076 0.924 38 H 0.044 0.956 39 H 0.031 0.969 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.109 0.891 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.925 3.139 -20.677 21.737 hybrid contribution -0.946 0.183 1.314 1.629 sum -6.871 3.322 -19.363 20.812 Atomic orbital electron populations 1.21770 0.94757 1.02348 1.01266 1.21092 0.96434 0.95635 0.97464 1.21882 1.01427 0.95217 1.02089 1.22169 0.93049 0.83326 0.97960 0.92297 1.22259 0.96050 1.01248 0.98578 1.21219 1.01289 0.94388 0.93881 0.89830 1.22066 0.96212 0.98446 0.90343 1.60629 1.62977 1.06400 1.02213 1.22156 0.96410 0.98680 0.89019 1.19067 0.96872 0.95078 0.90180 1.21179 1.30126 1.13619 0.91167 0.92785 1.25003 0.95087 0.95081 0.99191 1.69970 1.34266 1.23346 1.25671 0.86585 0.78204 0.79910 0.83238 1.20694 1.21169 1.19880 1.22208 0.96191 0.97582 1.03031 1.22603 0.94409 0.96043 0.88708 1.87866 1.74671 1.23321 1.43994 0.91874 0.92915 0.92975 0.90674 0.92093 0.92288 0.92430 0.90649 0.91163 0.95826 0.91463 0.84772 0.96824 0.92416 0.95642 0.96885 0.92980 0.91202 0.90300 0.89077 0.93085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.05 37.15 0.34 -0.97 16 2 C -0.09 -0.81 2.72 -90.62 -0.25 -1.06 16 3 C -0.15 -1.18 8.84 37.16 0.33 -0.85 16 4 C 0.09 1.01 1.95 -26.68 -0.05 0.96 16 5 H 0.06 0.70 6.71 -51.93 -0.35 0.35 16 6 C -0.14 -1.50 4.49 -26.59 -0.12 -1.62 16 7 C -0.09 -1.08 2.90 -90.44 -0.26 -1.34 16 8 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 9 C 0.06 0.85 4.58 -3.82 -0.02 0.84 16 10 N -0.69 -12.35 6.50 -113.78 -0.74 -13.08 16 11 C 0.07 1.40 5.62 -3.83 -0.02 1.38 16 12 C 0.03 0.67 5.23 -27.88 -0.15 0.53 16 13 C -0.52 -14.97 9.11 -34.44 -0.31 -15.29 16 14 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -27.09 13.29 55.43 0.74 -26.35 16 17 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 21 C -0.15 -1.76 5.47 -26.59 -0.15 -1.91 16 22 C 0.06 0.69 6.57 37.20 0.24 0.93 16 23 O -0.38 -4.68 9.73 -35.23 -0.34 -5.02 16 24 H 0.06 0.63 7.68 -51.93 -0.40 0.23 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.46 6.49 -51.93 -0.34 0.12 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.73 6.57 -51.93 -0.34 0.39 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.02 0.35 5.03 -51.93 -0.26 0.09 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.33 5.75 6.94 -39.29 -0.27 5.48 16 36 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.08 0.95 6.57 -51.93 -0.34 0.61 16 43 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.05 0.64 6.50 -51.93 -0.34 0.30 16 LS Contribution 334.89 15.07 5.05 5.05 Total: -1.00 -30.15 334.89 -8.93 -39.08 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -8.10 Total: 0.40 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: -0.51 Total: -16.83 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.00 Total: -39.44 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: -0.34 Total: -5.02 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.15 -8.93 -39.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381170485.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.754 kcal (2) G-P(sol) polarization free energy of solvation -30.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds