Wall clock time and date at job start Mon Mar 30 2020 06:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47263 * 2 1 4 4 C 1.52995 * 109.47177 * 120.00114 * 2 1 3 5 5 H 1.08998 * 109.48107 * 299.97885 * 4 2 1 6 6 C 1.53095 * 109.48236 * 179.97438 * 4 2 1 7 7 C 1.53180 * 109.16506 * 182.40833 * 6 4 2 8 8 H 1.09000 * 109.61149 * 176.89378 * 7 6 4 9 9 C 1.53002 * 109.54119 * 297.11162 * 7 6 4 10 10 N 1.46897 * 109.47010 * 184.55600 * 9 7 6 11 11 C 1.46893 * 111.00104 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47285 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47211 * 179.97438 * 12 11 10 14 14 H 1.08002 * 119.99761 * 359.97438 * 13 12 11 15 15 C 1.37871 * 119.99694 * 180.27574 * 13 12 11 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 12 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 12 18 18 H 1.48504 * 109.47209 * 89.99886 * 17 15 13 19 19 H 1.48501 * 109.47358 * 209.99377 * 17 15 13 20 20 H 1.48496 * 109.47341 * 329.99989 * 17 15 13 21 21 C 1.53174 * 109.03398 * 56.98074 * 7 6 4 22 22 C 1.53090 * 109.16640 * 303.01747 * 21 7 6 23 23 O 1.42901 * 109.48050 * 60.00102 * 4 2 1 24 24 H 1.09005 * 109.47202 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47441 * 300.00096 * 1 2 3 26 26 H 1.09007 * 109.47517 * 60.00239 * 1 2 3 27 27 H 1.09002 * 109.47268 * 240.00160 * 2 1 3 28 28 H 1.08993 * 109.47426 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.46839 * 300.00556 * 3 2 1 30 30 H 1.09002 * 109.46848 * 59.99903 * 3 2 1 31 31 H 1.09004 * 109.52107 * 62.50190 * 6 4 2 32 32 H 1.09004 * 109.52113 * 302.31438 * 6 4 2 33 33 H 1.09000 * 109.46515 * 64.55848 * 9 7 6 34 34 H 1.09001 * 109.47055 * 304.55890 * 9 7 6 35 35 H 1.00908 * 111.00037 * 303.95605 * 10 9 7 36 36 H 1.09000 * 109.47823 * 59.99694 * 11 10 9 37 37 H 1.09007 * 109.47029 * 299.99462 * 11 10 9 38 38 H 1.09000 * 109.47211 * 59.98987 * 12 11 10 39 39 H 1.09007 * 109.46376 * 299.99529 * 12 11 10 40 40 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 41 41 H 1.08998 * 109.52209 * 62.92694 * 21 7 6 42 42 H 1.09001 * 109.51975 * 183.05166 * 21 7 6 43 43 H 1.08998 * 109.48186 * 177.59152 * 22 21 7 44 44 H 1.09002 * 109.47993 * 297.62180 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6770 -0.2074 2.1393 6 6 3.5709 -0.7220 1.2491 7 6 4.0735 -1.4975 2.4707 8 1 5.1620 -1.5498 2.4485 9 6 3.6212 -0.7883 3.7488 10 7 4.1945 -1.4706 4.9165 11 6 3.7803 -0.8161 6.1646 12 6 4.3961 -1.5529 7.3557 13 6 3.9717 -0.8810 8.6361 14 1 3.3274 -0.0148 8.6035 15 6 4.4108 -1.3684 9.8487 16 7 5.1956 -2.4230 9.8884 17 14 3.8910 -0.5309 11.4355 18 1 2.6303 -1.1420 11.9278 19 1 4.9554 -0.7013 12.4569 20 1 3.6740 0.9163 11.1833 21 6 3.4915 -2.9140 2.4373 22 6 1.9637 -2.8287 2.3915 23 8 1.5637 -2.0686 1.2494 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 3.9356 0.3043 1.2938 32 1 3.9349 -1.1996 0.3394 33 1 2.5333 -0.8121 3.8118 34 1 3.9615 0.2471 3.7296 35 1 3.9462 -2.4487 4.9218 36 1 2.6935 -0.8403 6.2444 37 1 4.1214 0.2192 6.1625 38 1 5.4829 -1.5283 7.2757 39 1 4.0553 -2.5883 7.3580 40 1 5.5048 -2.7657 10.7415 41 1 3.8539 -3.4358 1.5516 42 1 3.8004 -3.4558 3.3312 43 1 1.5454 -3.8330 2.3245 44 1 1.5995 -2.3428 3.2968 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381170485.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:07 Heat of formation + Delta-G solvation = -100.287103 kcal Electronic energy + Delta-G solvation = -19623.166080 eV Core-core repulsion = 16766.172861 eV Total energy + Delta-G solvation = -2856.993220 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.06741 -37.78758 -36.26124 -35.53409 -34.22084 -31.15281 -31.04974 -28.12924 -27.27883 -25.69909 -24.71051 -24.27606 -22.43486 -21.17281 -19.88411 -18.51086 -17.53575 -17.14514 -16.95773 -16.49034 -15.85213 -15.61260 -15.33323 -14.97512 -14.90014 -14.32949 -14.18799 -14.15402 -13.77718 -13.39107 -13.29831 -13.00996 -12.86760 -12.68982 -12.53746 -12.35604 -12.17030 -12.10843 -11.94284 -11.88519 -11.72142 -11.41695 -11.30084 -11.25537 -10.95316 -10.57997 -10.25797 -9.27950 -8.21720 -6.33542 1.39659 1.41261 1.52512 2.39536 2.80776 3.11650 3.30439 3.65269 3.80853 3.93326 3.97410 4.10992 4.16267 4.24179 4.33308 4.38791 4.45223 4.54492 4.58676 4.68033 4.71118 4.75538 4.81597 4.83145 4.94164 5.02253 5.03239 5.03445 5.11607 5.18236 5.23916 5.27077 5.31779 5.42705 5.45469 5.47368 5.64902 5.76801 6.11767 6.25585 6.31475 6.51236 6.83482 7.35914 8.90454 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.032570 B = 0.003644 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.476873 B = 7681.982432 C = 7962.959589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 C -0.147 4.147 4 C 0.089 3.911 5 H 0.047 0.953 6 C -0.136 4.136 7 C -0.084 4.084 8 H 0.079 0.921 9 C 0.063 3.937 10 N -0.695 5.695 11 C 0.083 3.917 12 C 0.032 3.968 13 C -0.547 4.547 14 H 0.060 0.940 15 C 0.001 3.999 16 N -0.931 5.931 17 Si 0.968 3.032 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.263 1.263 21 C -0.149 4.149 22 C 0.059 3.941 23 O -0.389 6.389 24 H 0.050 0.950 25 H 0.048 0.952 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.026 0.974 34 H 0.067 0.933 35 H 0.337 0.663 36 H 0.016 0.984 37 H 0.057 0.943 38 H -0.005 1.005 39 H -0.009 1.009 40 H 0.264 0.736 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.104 0.896 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.153 4.044 -21.371 22.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.104 4.104 3 C -0.204 4.204 4 C 0.032 3.968 5 H 0.065 0.935 6 C -0.174 4.174 7 C -0.103 4.103 8 H 0.098 0.902 9 C -0.066 4.066 10 N -0.327 5.327 11 C -0.045 4.045 12 C -0.005 4.005 13 C -0.585 4.585 14 H 0.078 0.922 15 C -0.197 4.197 16 N -0.571 5.571 17 Si 0.792 3.208 18 H -0.197 1.197 19 H -0.206 1.206 20 H -0.187 1.187 21 C -0.187 4.187 22 C -0.018 4.018 23 O -0.308 6.308 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.085 0.915 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.098 0.902 33 H 0.044 0.956 34 H 0.086 0.914 35 H 0.156 0.844 36 H 0.034 0.966 37 H 0.075 0.925 38 H 0.013 0.987 39 H 0.009 0.991 40 H 0.073 0.927 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.122 0.878 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.580 4.210 -21.445 22.823 hybrid contribution -0.736 -0.182 1.499 1.680 sum -7.315 4.028 -19.945 21.623 Atomic orbital electron populations 1.21755 0.94729 1.01709 1.01810 1.21107 0.96474 0.96278 0.96560 1.21874 1.01708 0.94235 1.02560 1.22279 0.93322 0.82790 0.98430 0.93457 1.22219 0.95671 1.01665 0.97861 1.21170 1.01033 0.94782 0.93342 0.90241 1.22107 0.96187 0.98405 0.89908 1.60547 1.63462 1.06717 1.01939 1.21775 0.95938 0.97987 0.88848 1.18915 0.95058 0.94415 0.92119 1.21612 1.30437 1.14054 0.92399 0.92216 1.25980 0.94880 0.95663 1.03190 1.70103 1.35317 1.24824 1.26865 0.85413 0.78027 0.79141 0.78251 1.19682 1.20633 1.18732 1.22180 0.96148 0.97210 1.03171 1.22622 0.94428 0.96569 0.88145 1.87865 1.74965 1.23964 1.44027 0.93085 0.93313 0.91503 0.90431 0.91633 0.91015 0.92792 0.89586 0.90249 0.95637 0.91405 0.84404 0.96610 0.92476 0.98684 0.99053 0.92687 0.90136 0.91020 0.87831 0.94351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.05 71.98 0.65 -1.73 16 2 C -0.09 -1.43 2.72 -10.80 -0.03 -1.46 16 3 C -0.15 -2.00 8.84 71.98 0.64 -1.36 16 4 C 0.09 1.83 1.95 30.62 0.06 1.89 16 5 H 0.05 1.08 6.71 -2.39 -0.02 1.06 16 6 C -0.14 -2.61 4.49 30.69 0.14 -2.47 16 7 C -0.08 -1.95 2.90 -10.67 -0.03 -1.98 16 8 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 9 C 0.06 1.77 4.58 86.30 0.40 2.17 16 10 N -0.69 -24.84 6.50 -513.89 -3.34 -28.18 16 11 C 0.08 3.59 5.62 86.31 0.49 4.07 16 12 C 0.03 1.76 5.23 29.85 0.16 1.91 16 13 C -0.55 -31.63 9.11 25.60 0.23 -31.40 16 14 H 0.06 3.31 7.74 -2.91 -0.02 3.28 16 15 C 0.00 0.05 5.46 84.65 0.46 0.52 16 16 N -0.93 -57.26 13.29 21.45 0.28 -56.98 16 17 Si 0.97 44.50 29.54 68.60 2.03 46.53 16 18 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 20 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 21 C -0.15 -3.30 5.47 30.68 0.17 -3.14 16 22 C 0.06 1.32 6.57 72.01 0.47 1.80 16 23 O -0.39 -9.14 9.73 -148.98 -1.45 -10.59 16 24 H 0.05 0.97 7.68 -2.38 -0.02 0.95 16 25 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 27 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.06 0.83 6.49 -2.39 -0.02 0.82 16 29 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.09 1.48 6.57 -2.38 -0.02 1.46 16 32 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.03 0.73 5.03 -2.39 -0.01 0.72 16 34 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.34 11.72 6.94 -89.69 -0.62 11.10 16 36 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 38 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 39 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 40 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 41 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.07 1.69 6.57 -2.39 -0.02 1.67 16 43 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.04 0.95 6.50 -2.39 -0.02 0.94 16 Total: -1.00 -64.13 334.89 1.64 -62.49 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 0.33 Total: 17.91 kcal Atomic # 6 Polarization: -34.99 SS G_CDS: 3.80 Total: -31.19 kcal Atomic # 7 Polarization: -82.10 SS G_CDS: -3.06 Total: -85.15 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: -1.45 Total: -10.59 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -64.13 1.64 -62.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381170485.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.800 kcal (2) G-P(sol) polarization free energy of solvation -64.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds