Wall clock time and date at job start Mon Mar 30 2020 06:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 113.99994 * 2 1 4 4 C 1.52998 * 109.46991 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47246 * 180.02562 * 4 3 2 6 6 H 1.09011 * 109.46638 * 305.00261 * 5 4 3 7 7 N 1.46899 * 109.47226 * 64.99560 * 5 4 3 8 8 C 1.46899 * 111.00196 * 210.61126 * 7 5 4 9 9 C 1.52997 * 109.47574 * 82.34573 * 8 7 5 10 10 C 1.50707 * 115.54781 * 40.21716 * 9 8 7 11 11 H 1.07993 * 119.99693 * 264.58859 * 10 9 8 12 12 C 1.37878 * 119.99769 * 84.58999 * 10 9 8 13 13 N 1.31513 * 119.99941 * 3.80120 * 12 10 9 14 14 Si 1.86800 * 119.99682 * 183.80725 * 12 10 9 15 15 H 1.48494 * 109.47323 * 89.99529 * 14 12 10 16 16 H 1.48500 * 109.46978 * 210.00009 * 14 12 10 17 17 H 1.48506 * 109.46785 * 329.99460 * 14 12 10 18 18 C 1.52998 * 117.50067 * 254.51394 * 9 8 7 19 19 C 1.52994 * 117.50108 * 185.89085 * 9 8 7 20 20 C 1.52996 * 109.47548 * 185.00190 * 5 4 3 21 21 C 1.52999 * 109.47053 * 61.86817 * 20 5 4 22 22 C 1.53001 * 109.47241 * 181.86862 * 20 5 4 23 23 H 1.08998 * 109.47421 * 300.00675 * 1 2 3 24 24 H 1.09009 * 109.47096 * 60.00261 * 1 2 3 25 25 H 1.08998 * 109.47450 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47244 * 59.99826 * 3 2 1 27 27 H 1.08996 * 109.47229 * 299.99487 * 3 2 1 28 28 H 1.09006 * 109.47412 * 299.99636 * 4 3 2 29 29 H 1.08996 * 109.47257 * 59.99781 * 4 3 2 30 30 H 1.00899 * 111.00300 * 334.56713 * 7 5 4 31 31 H 1.09001 * 109.47030 * 202.34891 * 8 7 5 32 32 H 1.09002 * 109.47066 * 322.34672 * 8 7 5 33 33 H 0.97006 * 119.99262 * 180.02562 * 13 12 10 34 34 H 1.08999 * 117.49739 * 359.97438 * 18 9 8 35 35 H 1.08995 * 117.50248 * 145.01602 * 18 9 8 36 36 H 1.09006 * 117.49800 * 214.98001 * 19 9 8 37 37 H 1.09003 * 117.50270 * 359.97275 * 19 9 8 38 38 H 1.08996 * 109.47014 * 301.86828 * 20 5 4 39 39 H 1.08996 * 109.47201 * 60.00125 * 21 20 5 40 40 H 1.09007 * 109.47190 * 180.02562 * 21 20 5 41 41 H 1.08999 * 109.46821 * 300.00016 * 21 20 5 42 42 H 1.09000 * 109.47169 * 65.61257 * 22 20 5 43 43 H 1.09004 * 109.47116 * 185.61768 * 22 20 5 44 44 H 1.08997 * 109.47023 * 305.61448 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1578 2.5823 0.0013 6 1 3.7673 3.1543 -0.8406 7 7 3.8216 3.2675 1.2565 8 6 3.7278 4.7196 1.0549 9 6 2.3463 5.0691 0.4982 10 6 1.1924 4.3066 1.0968 11 1 0.8193 3.4194 0.6069 12 6 0.6130 4.7418 2.2698 13 7 1.0173 5.8626 2.8266 14 14 -0.7460 3.7394 3.0682 15 1 -0.1500 2.7633 4.0155 16 1 -1.6633 4.6464 3.8038 17 1 -1.5053 3.0115 2.0199 18 6 2.2550 5.4415 -0.9830 19 6 2.0965 6.5219 0.0887 20 6 5.6780 2.4639 -0.1238 21 6 6.0295 1.7921 -1.4528 22 6 6.3039 3.8591 -0.0763 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 1.6885 1.8464 0.8900 27 1 1.6886 1.8463 -0.8900 28 1 3.8567 0.6439 0.8909 29 1 3.8574 0.6435 -0.8890 30 1 2.9682 2.9014 1.6510 31 1 3.8753 5.2288 2.0073 32 1 4.4952 5.0388 0.3496 33 1 0.6099 6.1685 3.6521 34 1 3.1793 5.4379 -1.5607 35 1 1.3604 5.1350 -1.5248 36 1 1.0975 6.9262 0.2519 37 1 2.9163 7.2289 0.2163 38 1 6.0647 1.8640 0.7000 39 1 5.6428 2.3920 -2.2766 40 1 7.1126 1.7073 -1.5417 41 1 5.5835 0.7981 -1.4866 42 1 6.1384 4.2983 0.9074 43 1 7.3749 3.7836 -0.2651 44 1 5.8445 4.4896 -0.8376 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381439852.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:15 Heat of formation + Delta-G solvation = -38.997518 kcal Electronic energy + Delta-G solvation = -20925.805587 eV Core-core repulsion = 18071.470083 eV Total energy + Delta-G solvation = -2854.335504 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.61151 -37.14571 -35.98438 -32.46483 -32.02026 -30.91772 -27.03187 -26.47691 -25.75040 -24.67859 -23.16585 -21.17448 -20.98184 -19.28526 -19.13334 -16.14250 -16.04916 -15.64919 -14.95354 -14.75957 -14.64328 -14.23670 -13.75281 -13.60087 -13.46125 -12.76775 -12.47566 -12.18914 -11.96498 -11.75637 -11.59586 -11.36773 -11.20340 -11.02298 -11.00627 -10.80540 -10.63580 -10.39594 -10.35893 -10.12811 -10.08538 -9.83103 -9.60533 -9.17398 -8.90776 -8.50710 -8.00018 -7.26633 -6.10622 -4.18745 3.21789 3.28772 3.30623 4.12074 4.31250 5.01557 5.21008 5.31095 5.31257 5.35852 5.51044 5.57128 5.64836 5.69618 5.83402 5.88405 5.91683 5.98521 6.04600 6.08657 6.16805 6.18613 6.25224 6.30231 6.37785 6.47250 6.50687 6.57747 6.63311 6.65705 6.75358 6.81091 6.88730 7.13383 7.24510 7.43315 7.55074 7.57624 7.77920 8.08007 8.40733 8.57011 8.84806 9.47684 10.97226 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.015007 B = 0.009876 C = 0.006900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.404884 B = 2834.527738 C = 4057.141272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.400 6.400 3 C 0.049 3.951 4 C -0.119 4.119 5 C 0.096 3.904 6 H 0.049 0.951 7 N -0.679 5.679 8 C 0.091 3.909 9 C 0.015 3.985 10 C -0.503 4.503 11 H 0.061 0.939 12 C 0.078 3.922 13 N -0.867 5.867 14 Si 0.878 3.122 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.274 1.274 18 C -0.217 4.217 19 C -0.153 4.153 20 C -0.082 4.082 21 C -0.149 4.149 22 C -0.142 4.142 23 H 0.041 0.959 24 H 0.038 0.962 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.355 0.645 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.260 0.740 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.050 0.950 40 H 0.048 0.952 41 H 0.055 0.945 42 H 0.069 0.931 43 H 0.040 0.960 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.860 -6.584 -5.515 9.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.319 6.319 3 C -0.027 4.027 4 C -0.157 4.157 5 C -0.015 4.015 6 H 0.067 0.933 7 N -0.313 5.313 8 C -0.039 4.039 9 C 0.013 3.987 10 C -0.541 4.541 11 H 0.079 0.921 12 C -0.127 4.127 13 N -0.503 5.503 14 Si 0.705 3.295 15 H -0.202 1.202 16 H -0.211 1.211 17 H -0.199 1.199 18 C -0.254 4.254 19 C -0.192 4.192 20 C -0.101 4.101 21 C -0.207 4.207 22 C -0.199 4.199 23 H 0.060 0.940 24 H 0.057 0.943 25 H 0.097 0.903 26 H 0.095 0.905 27 H 0.065 0.935 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.179 0.821 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.088 0.912 43 H 0.059 0.941 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.579 -6.603 -5.104 10.038 hybrid contribution -2.016 0.032 -0.060 2.017 sum 3.563 -6.570 -5.163 9.084 Atomic orbital electron populations 1.22664 0.81598 1.01746 1.00326 1.87758 1.19286 1.29246 1.95607 1.22966 0.93888 0.83686 1.02119 1.21753 0.93263 0.97961 1.02734 1.21390 0.93631 0.92826 0.93662 0.93282 1.60938 1.42052 1.04462 1.23819 1.21780 0.94702 0.87618 0.99758 1.19733 0.94864 0.94388 0.89704 1.20432 1.15000 1.11053 1.07615 0.92093 1.24957 0.96129 0.94528 0.97077 1.70011 1.41556 1.19942 1.18759 0.86828 0.82331 0.80453 0.79890 1.20204 1.21150 1.19936 1.23015 0.99691 1.08701 0.93973 1.22403 1.00550 0.93094 1.03120 1.21069 0.95517 0.96648 0.96872 1.21932 1.00505 1.00550 0.97730 1.21914 0.98618 0.96879 1.02513 0.94002 0.94339 0.90319 0.90546 0.93495 0.91073 0.91363 0.82138 0.91595 0.93106 0.92994 0.92187 0.91129 0.90203 0.92250 0.91179 0.93088 0.93256 0.92628 0.91232 0.94084 0.93342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.62 16 2 O -0.40 -7.01 10.70 -35.23 -0.38 -7.38 16 3 C 0.05 0.89 5.01 37.16 0.19 1.07 16 4 C -0.12 -1.94 4.95 -26.73 -0.13 -2.07 16 5 C 0.10 1.62 1.71 -67.71 -0.12 1.50 16 6 H 0.05 0.91 6.95 -51.92 -0.36 0.55 16 7 N -0.68 -13.28 6.19 -106.72 -0.66 -13.95 16 8 C 0.09 1.93 4.97 -3.83 -0.02 1.91 16 9 C 0.01 0.34 1.47 -155.66 -0.23 0.11 16 10 C -0.50 -12.46 6.61 -34.44 -0.23 -12.69 16 11 H 0.06 1.49 5.50 -52.49 -0.29 1.20 16 12 C 0.08 2.01 5.43 -17.82 -0.10 1.91 16 13 N -0.87 -23.49 12.69 55.43 0.70 -22.78 16 14 Si 0.88 20.10 29.54 -169.99 -5.02 15.08 16 15 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 16 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 18 C -0.22 -4.62 9.28 -26.73 -0.25 -4.86 16 19 C -0.15 -3.55 9.22 -26.74 -0.25 -3.79 16 20 C -0.08 -1.20 2.68 -90.62 -0.24 -1.44 16 21 C -0.15 -1.87 8.89 37.16 0.33 -1.54 16 22 C -0.14 -2.08 7.60 37.16 0.28 -1.80 16 23 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.04 0.55 8.14 -51.92 -0.42 0.13 16 25 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.08 1.54 4.45 -51.93 -0.23 1.30 16 27 H 0.05 0.86 8.13 -51.93 -0.42 0.44 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.07 1.02 6.23 -51.93 -0.32 0.69 16 30 H 0.35 7.62 4.83 -39.29 -0.19 7.43 16 31 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 32 H 0.05 0.99 4.61 -51.93 -0.24 0.75 16 33 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 34 H 0.06 1.18 8.09 -51.93 -0.42 0.76 16 35 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 36 H 0.08 2.01 8.14 -51.93 -0.42 1.58 16 37 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.05 0.67 6.37 -51.93 -0.33 0.34 16 42 H 0.07 1.12 6.54 -51.93 -0.34 0.78 16 43 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.05 0.73 7.30 -51.93 -0.38 0.35 16 LS Contribution 334.29 15.07 5.04 5.04 Total: -1.00 -25.80 334.29 -7.70 -33.50 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -7.73 Total: 10.58 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: 0.35 Total: -20.08 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 0.04 Total: -36.73 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -0.38 Total: -7.38 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -25.80 -7.70 -33.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381439852.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.499 kcal (2) G-P(sol) polarization free energy of solvation -25.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds