Wall clock time and date at job start Mon Mar 30 2020 06:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 113.99994 * 2 1 4 4 C 1.52998 * 109.46991 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47246 * 180.02562 * 4 3 2 6 6 H 1.09011 * 109.46638 * 305.00261 * 5 4 3 7 7 N 1.46899 * 109.47226 * 64.99560 * 5 4 3 8 8 C 1.46899 * 111.00196 * 210.61126 * 7 5 4 9 9 C 1.52997 * 109.47574 * 82.34573 * 8 7 5 10 10 C 1.50707 * 115.54781 * 40.21716 * 9 8 7 11 11 H 1.07993 * 119.99693 * 264.58859 * 10 9 8 12 12 C 1.37878 * 119.99769 * 84.58999 * 10 9 8 13 13 N 1.31513 * 119.99941 * 3.80120 * 12 10 9 14 14 Si 1.86800 * 119.99682 * 183.80725 * 12 10 9 15 15 H 1.48494 * 109.47323 * 89.99529 * 14 12 10 16 16 H 1.48500 * 109.46978 * 210.00009 * 14 12 10 17 17 H 1.48506 * 109.46785 * 329.99460 * 14 12 10 18 18 C 1.52998 * 117.50067 * 254.51394 * 9 8 7 19 19 C 1.52994 * 117.50108 * 185.89085 * 9 8 7 20 20 C 1.52996 * 109.47548 * 185.00190 * 5 4 3 21 21 C 1.52999 * 109.47053 * 61.86817 * 20 5 4 22 22 C 1.53001 * 109.47241 * 181.86862 * 20 5 4 23 23 H 1.08998 * 109.47421 * 300.00675 * 1 2 3 24 24 H 1.09009 * 109.47096 * 60.00261 * 1 2 3 25 25 H 1.08998 * 109.47450 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47244 * 59.99826 * 3 2 1 27 27 H 1.08996 * 109.47229 * 299.99487 * 3 2 1 28 28 H 1.09006 * 109.47412 * 299.99636 * 4 3 2 29 29 H 1.08996 * 109.47257 * 59.99781 * 4 3 2 30 30 H 1.00899 * 111.00300 * 334.56713 * 7 5 4 31 31 H 1.09001 * 109.47030 * 202.34891 * 8 7 5 32 32 H 1.09002 * 109.47066 * 322.34672 * 8 7 5 33 33 H 0.97006 * 119.99262 * 180.02562 * 13 12 10 34 34 H 1.08999 * 117.49739 * 359.97438 * 18 9 8 35 35 H 1.08995 * 117.50248 * 145.01602 * 18 9 8 36 36 H 1.09006 * 117.49800 * 214.98001 * 19 9 8 37 37 H 1.09003 * 117.50270 * 359.97275 * 19 9 8 38 38 H 1.08996 * 109.47014 * 301.86828 * 20 5 4 39 39 H 1.08996 * 109.47201 * 60.00125 * 21 20 5 40 40 H 1.09007 * 109.47190 * 180.02562 * 21 20 5 41 41 H 1.08999 * 109.46821 * 300.00016 * 21 20 5 42 42 H 1.09000 * 109.47169 * 65.61257 * 22 20 5 43 43 H 1.09004 * 109.47116 * 185.61768 * 22 20 5 44 44 H 1.08997 * 109.47023 * 305.61448 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1578 2.5823 0.0013 6 1 3.7673 3.1543 -0.8406 7 7 3.8216 3.2675 1.2565 8 6 3.7278 4.7196 1.0549 9 6 2.3463 5.0691 0.4982 10 6 1.1924 4.3066 1.0968 11 1 0.8193 3.4194 0.6069 12 6 0.6130 4.7418 2.2698 13 7 1.0173 5.8626 2.8266 14 14 -0.7460 3.7394 3.0682 15 1 -0.1500 2.7633 4.0155 16 1 -1.6633 4.6464 3.8038 17 1 -1.5053 3.0115 2.0199 18 6 2.2550 5.4415 -0.9830 19 6 2.0965 6.5219 0.0887 20 6 5.6780 2.4639 -0.1238 21 6 6.0295 1.7921 -1.4528 22 6 6.3039 3.8591 -0.0763 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 1.6885 1.8464 0.8900 27 1 1.6886 1.8463 -0.8900 28 1 3.8567 0.6439 0.8909 29 1 3.8574 0.6435 -0.8890 30 1 2.9682 2.9014 1.6510 31 1 3.8753 5.2288 2.0073 32 1 4.4952 5.0388 0.3496 33 1 0.6099 6.1685 3.6521 34 1 3.1793 5.4379 -1.5607 35 1 1.3604 5.1350 -1.5248 36 1 1.0975 6.9262 0.2519 37 1 2.9163 7.2289 0.2163 38 1 6.0647 1.8640 0.7000 39 1 5.6428 2.3920 -2.2766 40 1 7.1126 1.7073 -1.5417 41 1 5.5835 0.7981 -1.4866 42 1 6.1384 4.2983 0.9074 43 1 7.3749 3.7836 -0.2651 44 1 5.8445 4.4896 -0.8376 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381439852.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:14 Heat of formation + Delta-G solvation = -53.416049 kcal Electronic energy + Delta-G solvation = -20926.430822 eV Core-core repulsion = 18071.470083 eV Total energy + Delta-G solvation = -2854.960738 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.08183 -38.58689 -37.54075 -33.98864 -33.80677 -32.36571 -28.30321 -27.88593 -27.33379 -26.20380 -24.67665 -22.92698 -22.35115 -21.03928 -20.51201 -17.93869 -17.51851 -17.07175 -16.53834 -16.27883 -16.08745 -15.85548 -15.23883 -14.95295 -14.76139 -14.44553 -13.90008 -13.54789 -13.45811 -13.24381 -13.01117 -12.87177 -12.74872 -12.60069 -12.50421 -12.39583 -12.06033 -11.94055 -11.87959 -11.66680 -11.36414 -11.27412 -11.18164 -10.77933 -10.56883 -10.43285 -9.82179 -8.86791 -8.09020 -6.19378 1.37118 1.40941 1.45505 2.39901 2.82627 3.19113 3.51704 3.68939 4.04727 4.11218 4.20159 4.35202 4.38170 4.42835 4.46589 4.53594 4.60095 4.63838 4.72514 4.75644 4.80866 4.81268 4.86434 4.91356 5.00196 5.05266 5.13125 5.14669 5.20422 5.27433 5.31915 5.36321 5.48414 5.61203 5.62889 5.66715 5.70581 5.81944 6.21655 6.35118 6.63290 6.84063 6.93895 7.48519 8.98703 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.015007 B = 0.009876 C = 0.006900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.404884 B = 2834.527738 C = 4057.141272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.408 6.408 3 C 0.056 3.944 4 C -0.112 4.112 5 C 0.099 3.901 6 H 0.037 0.963 7 N -0.679 5.679 8 C 0.105 3.895 9 C -0.002 4.002 10 C -0.498 4.498 11 H 0.062 0.938 12 C 0.034 3.966 13 N -0.899 5.899 14 Si 0.927 3.073 15 H -0.275 1.275 16 H -0.291 1.291 17 H -0.267 1.267 18 C -0.191 4.191 19 C -0.164 4.164 20 C -0.079 4.079 21 C -0.144 4.144 22 C -0.140 4.140 23 H 0.029 0.971 24 H 0.044 0.956 25 H 0.109 0.891 26 H 0.051 0.949 27 H 0.039 0.961 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.343 0.657 31 H 0.034 0.966 32 H 0.068 0.932 33 H 0.257 0.743 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.053 0.947 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.050 0.950 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.049 0.951 43 H 0.062 0.938 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.729 -8.193 -6.891 12.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.327 6.327 3 C -0.021 4.021 4 C -0.150 4.150 5 C -0.012 4.012 6 H 0.055 0.945 7 N -0.312 5.312 8 C -0.024 4.024 9 C -0.004 4.004 10 C -0.536 4.536 11 H 0.080 0.920 12 C -0.167 4.167 13 N -0.536 5.536 14 Si 0.754 3.246 15 H -0.201 1.201 16 H -0.217 1.217 17 H -0.191 1.191 18 C -0.229 4.229 19 C -0.202 4.202 20 C -0.098 4.098 21 C -0.202 4.202 22 C -0.197 4.197 23 H 0.048 0.952 24 H 0.062 0.938 25 H 0.127 0.873 26 H 0.069 0.931 27 H 0.058 0.942 28 H 0.089 0.911 29 H 0.106 0.894 30 H 0.165 0.835 31 H 0.052 0.948 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.081 0.919 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 6.451 -8.228 -6.498 12.310 hybrid contribution -2.292 0.507 0.329 2.371 sum 4.158 -7.721 -6.169 10.722 Atomic orbital electron populations 1.22871 0.80381 1.03723 0.99992 1.87746 1.20671 1.28743 1.95551 1.22813 0.95021 0.83768 1.00449 1.21713 0.92014 0.97631 1.03624 1.21466 0.95392 0.92639 0.91667 0.94487 1.60934 1.41118 1.03637 1.25483 1.21566 0.94117 0.88458 0.98308 1.19883 0.95296 0.94028 0.91149 1.20674 1.15003 1.10716 1.07236 0.92044 1.25536 0.98050 0.95300 0.97853 1.70120 1.42974 1.21399 1.19144 0.86031 0.80241 0.79177 0.79153 1.20114 1.21679 1.19136 1.22974 1.00579 1.06217 0.93082 1.22304 0.99391 0.93568 1.04979 1.21052 0.93444 0.96966 0.98357 1.21884 1.01794 1.00473 0.96025 1.21869 1.00095 0.96585 1.01172 0.95236 0.93751 0.87286 0.93053 0.94249 0.91141 0.89362 0.83503 0.94778 0.91338 0.93431 0.89802 0.91404 0.92853 0.91440 0.91257 0.93059 0.91479 0.92014 0.93201 0.91872 0.93760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 11.01 113.37 1.25 2.00 16 2 O -0.41 -13.62 10.70 -148.98 -1.59 -15.21 16 3 C 0.06 1.95 5.01 71.98 0.36 2.31 16 4 C -0.11 -3.44 4.95 30.59 0.15 -3.29 16 5 C 0.10 3.18 1.71 44.91 0.08 3.26 16 6 H 0.04 1.30 6.95 -2.38 -0.02 1.28 16 7 N -0.68 -26.38 6.19 -491.57 -3.05 -29.43 16 8 C 0.11 4.47 4.97 86.30 0.43 4.90 16 9 C 0.00 -0.08 1.47 -52.93 -0.08 -0.16 16 10 C -0.50 -24.85 6.61 25.60 0.17 -24.68 16 11 H 0.06 3.02 5.50 -2.91 -0.02 3.00 16 12 C 0.03 1.78 5.43 84.66 0.46 2.24 16 13 N -0.90 -49.90 12.69 21.45 0.27 -49.63 16 14 Si 0.93 41.78 29.54 68.60 2.03 43.80 16 15 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 16 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 17 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 18 C -0.19 -7.93 9.28 30.59 0.28 -7.65 16 19 C -0.16 -7.63 9.22 30.59 0.28 -7.35 16 20 C -0.08 -2.12 2.68 -10.79 -0.03 -2.15 16 21 C -0.14 -3.11 8.89 71.98 0.64 -2.47 16 22 C -0.14 -3.79 7.60 71.98 0.55 -3.24 16 23 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 25 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 26 H 0.05 2.06 4.45 -2.39 -0.01 2.05 16 27 H 0.04 1.41 8.13 -2.39 -0.02 1.39 16 28 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 29 H 0.09 2.37 6.23 -2.39 -0.01 2.36 16 30 H 0.34 14.81 4.83 -89.69 -0.43 14.38 16 31 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.07 2.63 4.61 -2.39 -0.01 2.61 16 33 H 0.26 13.85 8.31 -92.70 -0.77 13.08 16 34 H 0.08 3.08 8.09 -2.39 -0.02 3.06 16 35 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 36 H 0.05 2.74 8.14 -2.38 -0.02 2.72 16 37 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 38 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 41 H 0.06 1.26 6.37 -2.39 -0.02 1.24 16 42 H 0.05 1.54 6.54 -2.39 -0.02 1.52 16 43 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 44 H 0.04 1.22 7.30 -2.39 -0.02 1.20 16 Total: -1.00 -54.97 334.29 2.73 -52.24 By element: Atomic # 1 Polarization: 34.00 SS G_CDS: 0.53 Total: 34.53 kcal Atomic # 6 Polarization: -40.84 SS G_CDS: 4.54 Total: -36.30 kcal Atomic # 7 Polarization: -76.28 SS G_CDS: -2.77 Total: -79.06 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -1.59 Total: -15.21 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.80 kcal Total: -54.97 2.73 -52.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381439852.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.178 kcal (2) G-P(sol) polarization free energy of solvation -54.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds