Wall clock time and date at job start Mon Mar 30 2020 06:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99719 * 2 1 4 4 C 1.53001 * 109.47233 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47299 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.47350 * 54.99762 * 5 4 3 7 7 N 1.46902 * 109.47178 * 294.99899 * 5 4 3 8 8 C 1.46897 * 111.00357 * 152.08150 * 7 5 4 9 9 C 1.53001 * 109.47266 * 184.56591 * 8 7 5 10 10 C 1.50697 * 115.54798 * 321.09522 * 9 8 7 11 11 H 1.07998 * 120.00326 * 99.34640 * 10 9 8 12 12 C 1.37882 * 120.00046 * 279.34251 * 10 9 8 13 13 N 1.31512 * 120.00255 * 5.26026 * 12 10 9 14 14 Si 1.86802 * 120.00154 * 185.25263 * 12 10 9 15 15 H 1.48506 * 109.47122 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.46847 * 120.00337 * 14 12 10 17 17 H 1.48497 * 109.47299 * 240.00511 * 14 12 10 18 18 C 1.52992 * 117.49921 * 175.42619 * 9 8 7 19 19 C 1.52997 * 60.03131 * 252.49573 * 18 9 8 20 20 C 1.53000 * 109.47252 * 174.99920 * 5 4 3 21 21 C 1.53001 * 109.47126 * 294.76107 * 20 5 4 22 22 C 1.53001 * 109.47270 * 54.76296 * 20 5 4 23 23 H 1.08997 * 109.47414 * 299.99658 * 1 2 3 24 24 H 1.08998 * 109.47391 * 60.00748 * 1 2 3 25 25 H 1.09009 * 109.46662 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47511 * 59.99601 * 3 2 1 27 27 H 1.09001 * 109.47366 * 299.99746 * 3 2 1 28 28 H 1.08998 * 109.47282 * 59.99561 * 4 3 2 29 29 H 1.09005 * 109.46852 * 299.99703 * 4 3 2 30 30 H 1.00899 * 110.99775 * 28.12501 * 7 5 4 31 31 H 1.09000 * 109.47033 * 64.56440 * 8 7 5 32 32 H 1.09004 * 109.47034 * 304.56758 * 8 7 5 33 33 H 0.96993 * 120.00794 * 180.02562 * 13 12 10 34 34 H 1.09004 * 117.50092 * 359.97438 * 18 9 8 35 35 H 1.09000 * 117.50018 * 144.99906 * 18 9 8 36 36 H 1.08999 * 117.49887 * 107.50144 * 19 18 9 37 37 H 1.09000 * 117.50331 * 252.52383 * 19 18 9 38 38 H 1.09004 * 109.47077 * 174.76281 * 20 5 4 39 39 H 1.08998 * 109.46767 * 65.95067 * 21 20 5 40 40 H 1.09001 * 109.47425 * 185.95147 * 21 20 5 41 41 H 1.08998 * 109.47344 * 305.94975 * 21 20 5 42 42 H 1.09002 * 109.47134 * 59.99813 * 22 20 5 43 43 H 1.09000 * 109.47061 * 180.02562 * 22 20 5 44 44 H 1.09004 * 109.47058 * 299.99997 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.1576 2.5825 0.0013 6 1 3.7665 3.1539 0.8430 7 7 3.8226 3.2682 -1.2539 8 6 3.7912 4.7248 -1.0660 9 6 3.3293 5.3962 -2.3609 10 6 3.8550 4.7843 -3.6337 11 1 3.2366 4.1055 -4.2022 12 6 5.1256 5.0909 -4.0726 13 7 5.9164 5.8342 -3.3298 14 14 5.7240 4.4505 -5.7222 15 1 4.6514 3.6446 -6.3590 16 1 6.0703 5.5958 -6.6017 17 1 6.9257 3.6024 -5.5177 18 6 3.1270 6.9125 -2.3371 19 6 1.9148 5.9805 -2.3889 20 6 5.6778 2.4639 0.1277 21 6 6.0312 1.8686 1.4920 22 6 6.2122 1.5537 -0.9799 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 1.6884 1.8465 0.8900 27 1 1.6885 1.8464 -0.8900 28 1 3.8574 0.6436 -0.8890 29 1 3.8566 0.6440 0.8909 30 1 2.9471 2.9327 -1.6267 31 1 4.7892 5.0795 -0.8087 32 1 3.0989 4.9724 -0.2613 33 1 6.8101 6.0503 -3.6386 34 1 3.3226 7.4318 -1.3989 35 1 3.3741 7.4675 -3.2421 36 1 1.3132 5.8865 -1.4848 37 1 1.3647 5.9219 -3.3280 38 1 6.1282 3.4522 0.0348 39 1 5.6712 0.8411 1.5443 40 1 7.1130 1.8818 1.6251 41 1 5.5612 2.4587 2.2788 42 1 5.9604 1.9779 -1.9519 43 1 7.2952 1.4690 -0.8896 44 1 5.7618 0.5655 -0.8871 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381439855.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:17 Heat of formation + Delta-G solvation = -36.504540 kcal Electronic energy + Delta-G solvation = -20292.238057 eV Core-core repulsion = 17438.010657 eV Total energy + Delta-G solvation = -2854.227400 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.57386 -37.29013 -36.24292 -32.61157 -31.76615 -30.78727 -26.87694 -26.67159 -25.58929 -24.79408 -23.29739 -21.99305 -21.05790 -19.01921 -18.40910 -16.47927 -16.10430 -15.78184 -15.37551 -14.80026 -14.47017 -14.21291 -13.98433 -13.57875 -13.29077 -13.00928 -12.60558 -12.09856 -11.94833 -11.91798 -11.71121 -11.33936 -11.19769 -11.03057 -10.89353 -10.75512 -10.64827 -10.43119 -10.37410 -10.22970 -10.09196 -9.85555 -9.58779 -9.31906 -8.76568 -8.28985 -7.98567 -7.31879 -5.87235 -3.88115 3.38103 3.46515 3.49876 3.80193 4.54089 4.88735 5.11204 5.16880 5.27514 5.33386 5.36471 5.39337 5.45477 5.52915 5.58476 5.59590 5.70508 5.82292 5.88234 6.04379 6.15630 6.17404 6.25126 6.31535 6.33963 6.38551 6.53462 6.58010 6.61177 6.69918 6.74755 6.91465 7.02820 7.11610 7.15774 7.20084 7.48925 7.52804 8.03620 8.14430 8.37174 8.61122 9.07697 9.74974 11.23361 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.015716 B = 0.006937 C = 0.006159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.230885 B = 4035.365597 C = 4545.224711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.393 6.393 3 C 0.057 3.943 4 C -0.122 4.122 5 C 0.096 3.904 6 H 0.031 0.969 7 N -0.651 5.651 8 C 0.111 3.889 9 C 0.049 3.951 10 C -0.467 4.467 11 H 0.056 0.944 12 C 0.078 3.922 13 N -0.880 5.880 14 Si 0.884 3.116 15 H -0.275 1.275 16 H -0.289 1.289 17 H -0.285 1.285 18 C -0.162 4.162 19 C -0.220 4.220 20 C -0.080 4.080 21 C -0.148 4.148 22 C -0.137 4.137 23 H 0.037 0.963 24 H 0.042 0.958 25 H 0.082 0.918 26 H 0.043 0.957 27 H 0.054 0.946 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.332 0.668 31 H 0.072 0.928 32 H -0.011 1.011 33 H 0.255 0.745 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.052 0.948 40 H 0.050 0.950 41 H 0.047 0.953 42 H 0.078 0.922 43 H 0.037 0.963 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.229 -7.831 8.408 12.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.312 6.312 3 C -0.019 4.019 4 C -0.159 4.159 5 C -0.015 4.015 6 H 0.049 0.951 7 N -0.283 5.283 8 C -0.017 4.017 9 C 0.048 3.952 10 C -0.505 4.505 11 H 0.074 0.926 12 C -0.125 4.125 13 N -0.518 5.518 14 Si 0.713 3.287 15 H -0.200 1.200 16 H -0.215 1.215 17 H -0.212 1.212 18 C -0.200 4.200 19 C -0.257 4.257 20 C -0.099 4.099 21 C -0.206 4.206 22 C -0.194 4.194 23 H 0.056 0.944 24 H 0.061 0.939 25 H 0.101 0.899 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.102 0.898 29 H 0.090 0.910 30 H 0.152 0.848 31 H 0.090 0.910 32 H 0.007 0.993 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.097 0.903 43 H 0.056 0.944 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.290 -7.923 8.173 12.164 hybrid contribution -0.645 0.223 -0.330 0.758 sum -4.936 -7.700 7.843 12.048 Atomic orbital electron populations 1.22711 0.81467 1.02360 0.99978 1.87855 1.19383 1.28498 1.95425 1.22675 0.94905 0.84255 1.00082 1.21810 0.91989 0.98367 1.03765 1.21472 0.95267 0.92518 0.92215 0.95086 1.60317 1.38624 1.05010 1.24350 1.21494 0.99249 0.86426 0.94580 1.18947 0.90604 0.91149 0.94479 1.20161 0.99017 1.26624 1.04682 0.92632 1.24806 0.96437 0.94827 0.96387 1.69994 1.07567 1.37839 1.36356 0.86678 0.78805 0.78481 0.84775 1.19972 1.21533 1.21174 1.22520 1.01550 0.95902 1.00044 1.23074 0.92605 1.10365 0.99654 1.20990 0.94830 1.00157 0.93900 1.21921 1.00787 1.00542 0.97319 1.21741 0.98693 0.98401 1.00611 0.94404 0.93942 0.89927 0.93918 0.92787 0.89804 0.90993 0.84825 0.91016 0.99277 0.93551 0.92184 0.90210 0.92218 0.90637 0.90764 0.92927 0.93108 0.93398 0.90339 0.94398 0.93706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.39 -5.56 10.70 -35.23 -0.38 -5.94 16 3 C 0.06 0.80 5.78 37.16 0.21 1.02 16 4 C -0.12 -1.76 4.35 -26.73 -0.12 -1.88 16 5 C 0.10 1.56 1.82 -67.71 -0.12 1.44 16 6 H 0.03 0.51 7.68 -51.93 -0.40 0.11 16 7 N -0.65 -12.76 5.11 -106.73 -0.55 -13.30 16 8 C 0.11 2.43 5.63 -3.83 -0.02 2.41 16 9 C 0.05 1.17 1.59 -155.63 -0.25 0.92 16 10 C -0.47 -12.38 8.12 -34.44 -0.28 -12.66 16 11 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 12 C 0.08 2.11 5.42 -17.82 -0.10 2.01 16 13 N -0.88 -24.75 13.09 55.43 0.73 -24.02 16 14 Si 0.88 21.42 29.54 -169.99 -5.02 16.39 16 15 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 18 C -0.16 -3.78 9.68 -26.74 -0.26 -4.04 16 19 C -0.22 -4.72 9.89 -26.70 -0.26 -4.98 16 20 C -0.08 -1.29 2.85 -90.62 -0.26 -1.55 16 21 C -0.15 -1.95 8.81 37.16 0.33 -1.63 16 22 C -0.14 -2.28 8.59 37.16 0.32 -1.97 16 23 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.08 0.73 8.14 -51.92 -0.42 0.31 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.79 6.44 -51.93 -0.33 0.45 16 28 H 0.08 1.30 6.65 -51.93 -0.35 0.96 16 29 H 0.07 0.97 6.48 -51.93 -0.34 0.63 16 30 H 0.33 6.40 6.40 -39.29 -0.25 6.15 16 31 H 0.07 1.75 7.66 -51.93 -0.40 1.35 16 32 H -0.01 -0.22 7.74 -51.93 -0.40 -0.62 16 33 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 34 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.08 1.98 8.14 -51.93 -0.42 1.56 16 36 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 37 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 38 H 0.07 1.40 7.64 -51.93 -0.40 1.00 16 39 H 0.05 0.64 6.76 -51.93 -0.35 0.29 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.08 1.56 7.76 -51.93 -0.40 1.16 16 43 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.04 0.67 6.46 -51.93 -0.34 0.33 16 LS Contribution 346.59 15.07 5.22 5.22 Total: -1.00 -27.78 346.59 -7.83 -35.62 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -8.14 Total: 5.47 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: 0.31 Total: -19.45 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.18 Total: -37.32 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: -0.38 Total: -5.94 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -27.78 -7.83 -35.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381439855.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.888 kcal (2) G-P(sol) polarization free energy of solvation -27.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds