Wall clock time and date at job start Mon Mar 30 2020 06:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99719 * 2 1 4 4 C 1.53001 * 109.47233 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47299 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.47350 * 54.99762 * 5 4 3 7 7 N 1.46902 * 109.47178 * 294.99899 * 5 4 3 8 8 C 1.46897 * 111.00357 * 152.08150 * 7 5 4 9 9 C 1.53001 * 109.47266 * 184.56591 * 8 7 5 10 10 C 1.50697 * 115.54798 * 321.09522 * 9 8 7 11 11 H 1.07998 * 120.00326 * 99.34640 * 10 9 8 12 12 C 1.37882 * 120.00046 * 279.34251 * 10 9 8 13 13 N 1.31512 * 120.00255 * 5.26026 * 12 10 9 14 14 Si 1.86802 * 120.00154 * 185.25263 * 12 10 9 15 15 H 1.48506 * 109.47122 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.46847 * 120.00337 * 14 12 10 17 17 H 1.48497 * 109.47299 * 240.00511 * 14 12 10 18 18 C 1.52992 * 117.49921 * 175.42619 * 9 8 7 19 19 C 1.52997 * 60.03131 * 252.49573 * 18 9 8 20 20 C 1.53000 * 109.47252 * 174.99920 * 5 4 3 21 21 C 1.53001 * 109.47126 * 294.76107 * 20 5 4 22 22 C 1.53001 * 109.47270 * 54.76296 * 20 5 4 23 23 H 1.08997 * 109.47414 * 299.99658 * 1 2 3 24 24 H 1.08998 * 109.47391 * 60.00748 * 1 2 3 25 25 H 1.09009 * 109.46662 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47511 * 59.99601 * 3 2 1 27 27 H 1.09001 * 109.47366 * 299.99746 * 3 2 1 28 28 H 1.08998 * 109.47282 * 59.99561 * 4 3 2 29 29 H 1.09005 * 109.46852 * 299.99703 * 4 3 2 30 30 H 1.00899 * 110.99775 * 28.12501 * 7 5 4 31 31 H 1.09000 * 109.47033 * 64.56440 * 8 7 5 32 32 H 1.09004 * 109.47034 * 304.56758 * 8 7 5 33 33 H 0.96993 * 120.00794 * 180.02562 * 13 12 10 34 34 H 1.09004 * 117.50092 * 359.97438 * 18 9 8 35 35 H 1.09000 * 117.50018 * 144.99906 * 18 9 8 36 36 H 1.08999 * 117.49887 * 107.50144 * 19 18 9 37 37 H 1.09000 * 117.50331 * 252.52383 * 19 18 9 38 38 H 1.09004 * 109.47077 * 174.76281 * 20 5 4 39 39 H 1.08998 * 109.46767 * 65.95067 * 21 20 5 40 40 H 1.09001 * 109.47425 * 185.95147 * 21 20 5 41 41 H 1.08998 * 109.47344 * 305.94975 * 21 20 5 42 42 H 1.09002 * 109.47134 * 59.99813 * 22 20 5 43 43 H 1.09000 * 109.47061 * 180.02562 * 22 20 5 44 44 H 1.09004 * 109.47058 * 299.99997 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.1576 2.5825 0.0013 6 1 3.7665 3.1539 0.8430 7 7 3.8226 3.2682 -1.2539 8 6 3.7912 4.7248 -1.0660 9 6 3.3293 5.3962 -2.3609 10 6 3.8550 4.7843 -3.6337 11 1 3.2366 4.1055 -4.2022 12 6 5.1256 5.0909 -4.0726 13 7 5.9164 5.8342 -3.3298 14 14 5.7240 4.4505 -5.7222 15 1 4.6514 3.6446 -6.3590 16 1 6.0703 5.5958 -6.6017 17 1 6.9257 3.6024 -5.5177 18 6 3.1270 6.9125 -2.3371 19 6 1.9148 5.9805 -2.3889 20 6 5.6778 2.4639 0.1277 21 6 6.0312 1.8686 1.4920 22 6 6.2122 1.5537 -0.9799 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 1.6884 1.8465 0.8900 27 1 1.6885 1.8464 -0.8900 28 1 3.8574 0.6436 -0.8890 29 1 3.8566 0.6440 0.8909 30 1 2.9471 2.9327 -1.6267 31 1 4.7892 5.0795 -0.8087 32 1 3.0989 4.9724 -0.2613 33 1 6.8101 6.0503 -3.6386 34 1 3.3226 7.4318 -1.3989 35 1 3.3741 7.4675 -3.2421 36 1 1.3132 5.8865 -1.4848 37 1 1.3647 5.9219 -3.3280 38 1 6.1282 3.4522 0.0348 39 1 5.6712 0.8411 1.5443 40 1 7.1130 1.8818 1.6251 41 1 5.5612 2.4587 2.2788 42 1 5.9604 1.9779 -1.9519 43 1 7.2952 1.4690 -0.8896 44 1 5.7618 0.5655 -0.8871 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381439855.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:17 Heat of formation + Delta-G solvation = -52.202832 kcal Electronic energy + Delta-G solvation = -20292.918786 eV Core-core repulsion = 17438.010657 eV Total energy + Delta-G solvation = -2854.908129 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.86721 -38.59773 -37.81162 -34.07554 -33.80449 -32.03446 -28.04224 -27.89690 -27.36336 -26.24734 -24.76928 -23.20404 -22.85448 -20.91611 -19.72196 -18.02413 -17.40393 -17.02695 -16.64527 -16.49644 -16.06311 -15.81410 -15.12414 -15.02537 -14.79052 -14.47478 -13.98498 -13.68963 -13.54913 -13.14379 -12.91799 -12.86513 -12.73179 -12.65954 -12.50503 -12.30828 -12.10572 -11.97051 -11.88416 -11.67317 -11.57922 -11.20867 -11.11123 -10.70533 -10.59300 -10.30735 -9.85375 -8.85240 -7.96016 -6.00331 1.42390 1.46462 1.54608 2.52072 2.81412 3.33504 3.43862 3.59627 3.92415 4.04315 4.13708 4.33324 4.36181 4.41770 4.51254 4.53049 4.55816 4.57368 4.61892 4.68532 4.77320 4.81425 4.85310 4.90478 4.92239 4.99156 5.02555 5.14392 5.19448 5.24582 5.29948 5.34179 5.38700 5.59892 5.63690 5.69387 5.74143 5.93180 6.22571 6.44747 6.66173 6.88297 7.01464 7.64500 9.13788 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.015716 B = 0.006937 C = 0.006159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.230885 B = 4035.365597 C = 4545.224711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.411 6.411 3 C 0.061 3.939 4 C -0.112 4.112 5 C 0.099 3.901 6 H 0.037 0.963 7 N -0.664 5.664 8 C 0.128 3.872 9 C 0.022 3.978 10 C -0.469 4.469 11 H 0.046 0.954 12 C 0.035 3.965 13 N -0.907 5.907 14 Si 0.935 3.065 15 H -0.270 1.270 16 H -0.288 1.288 17 H -0.288 1.288 18 C -0.171 4.171 19 C -0.191 4.191 20 C -0.080 4.080 21 C -0.139 4.139 22 C -0.130 4.130 23 H 0.050 0.950 24 H 0.043 0.957 25 H 0.100 0.900 26 H 0.054 0.946 27 H 0.044 0.956 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.334 0.666 31 H 0.038 0.962 32 H 0.005 0.995 33 H 0.252 0.748 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.039 0.961 39 H 0.068 0.932 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.038 0.962 43 H 0.043 0.957 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.409 -9.177 9.546 14.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.331 6.331 3 C -0.015 4.015 4 C -0.149 4.149 5 C -0.011 4.011 6 H 0.055 0.945 7 N -0.297 5.297 8 C -0.001 4.001 9 C 0.021 3.979 10 C -0.507 4.507 11 H 0.064 0.936 12 C -0.164 4.164 13 N -0.546 5.546 14 Si 0.763 3.237 15 H -0.195 1.195 16 H -0.214 1.214 17 H -0.215 1.215 18 C -0.209 4.209 19 C -0.228 4.228 20 C -0.099 4.099 21 C -0.197 4.197 22 C -0.188 4.188 23 H 0.069 0.931 24 H 0.062 0.938 25 H 0.119 0.881 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.090 0.910 29 H 0.107 0.893 30 H 0.154 0.846 31 H 0.056 0.944 32 H 0.023 0.977 33 H 0.061 0.939 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.058 0.942 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.057 0.943 43 H 0.063 0.937 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.488 -9.277 9.305 14.240 hybrid contribution -0.330 0.625 -0.686 0.985 sum -5.818 -8.652 8.619 13.527 Atomic orbital electron populations 1.22930 0.79721 1.03867 1.00652 1.87818 1.21332 1.28366 1.95543 1.22576 0.94376 0.84468 1.00114 1.21683 0.92551 0.96765 1.03935 1.21490 0.95362 0.93414 0.90790 0.94542 1.60205 1.38858 1.03999 1.26589 1.21156 0.97482 0.87615 0.93856 1.19083 0.92870 0.91462 0.94484 1.20357 0.98810 1.25963 1.05565 0.93583 1.25370 0.96831 0.95346 0.98879 1.70097 1.07646 1.39245 1.37584 0.85876 0.78174 0.77868 0.81824 1.19496 1.21444 1.21464 1.22442 1.03390 0.95606 0.99488 1.23058 0.91544 1.07229 1.00980 1.20969 0.94669 0.98491 0.95788 1.21838 1.01450 1.01241 0.95175 1.21653 0.99331 0.99114 0.98665 0.93139 0.93835 0.88120 0.92795 0.93808 0.91010 0.89290 0.84604 0.94362 0.97675 0.93919 0.91216 0.92489 0.89402 0.90536 0.94226 0.91312 0.92435 0.92504 0.94261 0.93749 0.91819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 11.01 113.37 1.25 1.71 16 2 O -0.41 -10.71 10.70 -148.98 -1.59 -12.31 16 3 C 0.06 1.59 5.78 71.98 0.42 2.00 16 4 C -0.11 -3.02 4.35 30.59 0.13 -2.88 16 5 C 0.10 3.13 1.82 44.91 0.08 3.22 16 6 H 0.04 1.13 7.68 -2.39 -0.02 1.11 16 7 N -0.66 -25.97 5.11 -491.57 -2.51 -28.48 16 8 C 0.13 5.60 5.63 86.30 0.49 6.09 16 9 C 0.02 1.03 1.59 -52.91 -0.08 0.95 16 10 C -0.47 -25.09 8.12 25.60 0.21 -24.88 16 11 H 0.05 2.50 7.82 -2.91 -0.02 2.48 16 12 C 0.04 1.94 5.42 84.66 0.46 2.40 16 13 N -0.91 -52.27 13.09 21.45 0.28 -51.99 16 14 Si 0.93 44.64 29.54 68.60 2.03 46.66 16 15 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 16 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 17 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 18 C -0.17 -7.96 9.68 30.59 0.30 -7.66 16 19 C -0.19 -7.89 9.89 30.62 0.30 -7.58 16 20 C -0.08 -2.56 2.85 -10.79 -0.03 -2.59 16 21 C -0.14 -3.37 8.81 71.98 0.63 -2.74 16 22 C -0.13 -4.31 8.59 71.98 0.62 -3.69 16 23 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.04 0.80 8.14 -2.39 -0.02 0.79 16 25 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 26 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 27 H 0.04 1.21 6.44 -2.39 -0.02 1.20 16 28 H 0.07 2.13 6.65 -2.39 -0.02 2.11 16 29 H 0.09 2.12 6.48 -2.38 -0.02 2.10 16 30 H 0.33 12.71 6.40 -89.70 -0.57 12.14 16 31 H 0.04 1.91 7.66 -2.39 -0.02 1.90 16 32 H 0.01 0.21 7.74 -2.39 -0.02 0.20 16 33 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 34 H 0.07 3.05 8.14 -2.38 -0.02 3.04 16 35 H 0.06 2.87 8.14 -2.39 -0.02 2.85 16 36 H 0.09 3.14 8.08 -2.39 -0.02 3.12 16 37 H 0.08 3.13 8.14 -2.39 -0.02 3.12 16 38 H 0.04 1.53 7.64 -2.39 -0.02 1.52 16 39 H 0.07 1.45 6.76 -2.39 -0.02 1.44 16 40 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.04 1.59 7.76 -2.39 -0.02 1.57 16 43 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.06 1.83 6.46 -2.39 -0.02 1.81 16 Total: -1.00 -59.76 346.59 3.34 -56.43 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: 0.37 Total: 25.37 kcal Atomic # 6 Polarization: -40.45 SS G_CDS: 4.77 Total: -35.68 kcal Atomic # 7 Polarization: -78.24 SS G_CDS: -2.23 Total: -80.47 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: -1.59 Total: -12.31 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -59.76 3.34 -56.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381439855.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.224 kcal (2) G-P(sol) polarization free energy of solvation -59.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds