Wall clock time and date at job start Mon Mar 30 2020 07:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 114.00589 * 2 1 4 4 C 1.52999 * 109.47338 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47084 * 60.00041 * 4 3 2 6 6 C 1.53002 * 109.47268 * 299.99826 * 4 3 2 7 7 C 1.52999 * 109.47356 * 179.97438 * 4 3 2 8 8 N 1.46899 * 109.47397 * 180.02562 * 7 4 3 9 9 C 1.46900 * 111.00040 * 180.02562 * 8 7 4 10 10 H 1.08999 * 110.05430 * 326.41679 * 9 8 7 11 11 C 1.54268 * 110.03156 * 87.82956 * 9 8 7 12 12 C 1.54895 * 104.19476 * 142.89360 * 11 9 8 13 13 C 1.54961 * 102.77671 * 322.08719 * 12 11 9 14 14 H 1.08997 * 110.47708 * 279.23123 * 13 12 11 15 15 C 1.50704 * 110.53246 * 156.56513 * 13 12 11 16 16 H 1.07999 * 120.00284 * 245.24703 * 15 13 12 17 17 C 1.37872 * 119.99722 * 65.23641 * 15 13 12 18 18 N 1.31521 * 120.00371 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00100 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46909 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46894 * 120.00328 * 19 17 15 22 22 H 1.48495 * 109.47491 * 240.00492 * 19 17 15 23 23 C 1.53869 * 110.03244 * 204.99899 * 9 8 7 24 24 H 1.09001 * 109.47546 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46729 * 300.00237 * 1 2 3 26 26 H 1.08997 * 109.46927 * 59.99675 * 1 2 3 27 27 H 1.09004 * 109.47107 * 59.99816 * 3 2 1 28 28 H 1.08995 * 109.46748 * 300.00157 * 3 2 1 29 29 H 1.09000 * 109.47324 * 180.02562 * 5 4 3 30 30 H 1.09001 * 109.47239 * 299.99653 * 5 4 3 31 31 H 1.09003 * 109.47332 * 59.99789 * 5 4 3 32 32 H 1.08996 * 109.47477 * 300.00209 * 6 4 3 33 33 H 1.09007 * 109.46788 * 59.99981 * 6 4 3 34 34 H 1.09000 * 109.47374 * 179.97438 * 6 4 3 35 35 H 1.09004 * 109.47042 * 59.99985 * 7 4 3 36 36 H 1.08998 * 109.47172 * 300.00683 * 7 4 3 37 37 H 1.00896 * 111.00000 * 56.04634 * 8 7 4 38 38 H 1.08997 * 110.48788 * 261.57268 * 11 9 8 39 39 H 1.09000 * 110.48806 * 24.08568 * 11 9 8 40 40 H 1.09001 * 110.75082 * 80.37254 * 12 11 9 41 41 H 1.08991 * 110.75596 * 203.55944 * 12 11 9 42 42 H 0.96993 * 120.00175 * 179.97438 * 18 17 15 43 43 H 1.09002 * 110.03268 * 0.02562 * 23 9 8 44 44 H 1.08995 * 110.03391 * 121.38432 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 3.9874 0.4250 -1.2483 6 6 3.9865 0.4254 1.2502 7 6 4.1580 2.5821 0.0000 8 7 5.6224 2.4661 0.0000 9 6 6.2555 3.7916 0.0000 10 1 5.6469 4.4965 -0.5664 11 6 6.4338 4.2921 1.4483 12 6 7.7935 5.0337 1.4293 13 6 8.6514 4.1524 0.4866 14 1 9.0438 3.2891 1.0239 15 6 9.7754 4.9579 -0.1125 16 1 9.8003 5.1422 -1.1764 17 6 10.7718 5.4597 0.6976 18 7 10.7417 5.2350 1.9931 19 14 12.1646 6.4588 -0.0448 20 1 11.9677 6.5680 -1.5127 21 1 12.1740 7.8171 0.5554 22 1 13.4590 5.7860 0.2327 23 6 7.6649 3.7025 -0.6109 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.6887 1.8464 0.8900 28 1 1.6887 1.8463 -0.8899 29 1 5.0740 0.3384 -1.2476 30 1 3.5441 -0.5708 -1.2483 31 1 3.6662 0.9657 -2.1385 32 1 3.6645 0.9665 2.1400 33 1 3.5430 -0.5703 1.2502 34 1 5.0730 0.3389 1.2505 35 1 3.8360 3.1236 0.8896 36 1 3.8366 3.1226 -0.8904 37 1 5.9412 1.9127 -0.7811 38 1 5.6295 4.9769 1.7170 39 1 6.4652 3.4513 2.1413 40 1 7.6800 6.0379 1.0211 41 1 8.2270 5.0712 2.4286 42 1 11.4428 5.5877 2.5629 43 1 7.8790 2.6758 -0.9078 44 1 7.7402 4.3635 -1.4742 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382255990.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:58 Heat of formation + Delta-G solvation = -72.116165 kcal Electronic energy + Delta-G solvation = -19604.691262 eV Core-core repulsion = 16748.919626 eV Total energy + Delta-G solvation = -2855.771636 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.05459 -37.69842 -36.05523 -33.13614 -31.50463 -28.08118 -27.59371 -27.16267 -26.97639 -25.84126 -23.99091 -23.19535 -19.34035 -19.15772 -18.69598 -16.60918 -16.39116 -16.00820 -15.72612 -14.96169 -14.59739 -14.47359 -14.21006 -13.60317 -13.30597 -13.22151 -12.75276 -12.40603 -12.25350 -11.77611 -11.74461 -11.64966 -11.55860 -10.99903 -10.84971 -10.74106 -10.63178 -10.59292 -10.41973 -10.26330 -10.01665 -9.82578 -9.77795 -9.47380 -9.08804 -8.69574 -8.29812 -7.96848 -5.94258 -3.96678 3.32747 3.40799 3.44394 3.54194 4.48923 4.61683 4.75733 4.84896 4.97248 5.09616 5.11369 5.29150 5.37096 5.38585 5.40683 5.50299 5.61555 5.66167 5.82049 5.85641 5.91994 6.02724 6.06077 6.08144 6.25270 6.39466 6.41499 6.54760 6.58306 6.72348 6.79607 6.94217 6.97881 7.10906 7.26349 7.42180 7.62605 7.76034 7.83936 7.96632 8.13266 8.53424 9.06620 9.66811 11.15197 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.058015 B = 0.003547 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.519383 B = 7891.395578 C = 8021.929842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.385 6.385 3 C 0.071 3.929 4 C -0.060 4.060 5 C -0.140 4.140 6 C -0.127 4.127 7 C 0.071 3.929 8 N -0.677 5.677 9 C 0.084 3.916 10 H 0.032 0.968 11 C -0.115 4.115 12 C -0.100 4.100 13 C 0.053 3.947 14 H 0.032 0.968 15 C -0.512 4.512 16 H 0.053 0.947 17 C 0.061 3.939 18 N -0.889 5.889 19 Si 0.887 3.113 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.285 1.285 23 C -0.117 4.117 24 H 0.083 0.917 25 H 0.039 0.961 26 H 0.038 0.962 27 H 0.048 0.952 28 H 0.045 0.955 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.052 0.948 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.023 0.977 37 H 0.336 0.664 38 H 0.037 0.963 39 H 0.065 0.935 40 H 0.043 0.957 41 H 0.065 0.935 42 H 0.258 0.742 43 H 0.048 0.952 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.090 -7.860 -3.623 20.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.303 6.303 3 C -0.006 4.006 4 C -0.060 4.060 5 C -0.198 4.198 6 C -0.184 4.184 7 C -0.059 4.059 8 N -0.310 5.310 9 C -0.025 4.025 10 H 0.050 0.950 11 C -0.153 4.153 12 C -0.139 4.139 13 C 0.034 3.966 14 H 0.050 0.950 15 C -0.551 4.551 16 H 0.072 0.928 17 C -0.140 4.140 18 N -0.527 5.527 19 Si 0.715 3.285 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.155 4.155 24 H 0.102 0.898 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.041 0.959 37 H 0.156 0.844 38 H 0.056 0.944 39 H 0.084 0.916 40 H 0.062 0.938 41 H 0.084 0.916 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.830 -8.060 -2.793 19.766 hybrid contribution 0.292 1.236 -1.260 1.789 sum -17.539 -6.825 -4.053 19.251 Atomic orbital electron populations 1.22712 0.81528 1.02508 0.99779 1.87874 1.19106 1.28000 1.95338 1.22566 0.93789 0.84384 0.99830 1.20574 0.91823 0.96098 0.97542 1.21815 1.01480 1.00522 0.95945 1.21658 1.02399 0.99065 0.95312 1.21904 0.89405 0.94508 1.00107 1.60697 1.04211 1.16310 1.49796 1.22283 0.95235 0.87660 0.97328 0.95040 1.22496 0.98500 0.99096 0.95217 1.22431 0.92131 0.97806 1.01534 1.19380 0.91422 0.94828 0.90939 0.94974 1.21264 1.07377 1.32789 0.93632 0.92836 1.24984 0.97810 0.96336 0.94877 1.69978 1.33689 1.45664 1.03418 0.86622 0.82479 0.80030 0.79356 1.19899 1.21148 1.21112 1.22467 0.93483 0.99610 0.99922 0.89808 0.94240 0.94349 0.93330 0.93650 0.91984 0.91896 0.93414 0.93360 0.92910 0.91066 0.91152 0.95851 0.84396 0.94432 0.91617 0.93782 0.91614 0.93231 0.93339 0.92905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.36 16 2 O -0.38 -4.21 9.35 -35.23 -0.33 -4.54 16 3 C 0.07 0.75 4.81 37.16 0.18 0.93 16 4 C -0.06 -0.69 0.68 -154.51 -0.10 -0.80 16 5 C -0.14 -1.56 8.00 37.16 0.30 -1.27 16 6 C -0.13 -1.57 8.17 37.16 0.30 -1.27 16 7 C 0.07 0.91 4.48 -3.82 -0.02 0.90 16 8 N -0.68 -10.34 5.48 -105.55 -0.58 -10.92 16 9 C 0.08 1.51 3.25 -66.60 -0.22 1.29 16 10 H 0.03 0.55 7.81 -51.93 -0.41 0.15 16 11 C -0.11 -2.24 6.49 -25.07 -0.16 -2.40 16 12 C -0.10 -2.38 5.75 -24.70 -0.14 -2.52 16 13 C 0.05 1.33 2.72 -90.07 -0.25 1.09 16 14 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 15 C -0.51 -14.21 8.47 -34.44 -0.29 -14.50 16 16 H 0.05 1.47 7.54 -52.49 -0.40 1.07 16 17 C 0.06 1.72 5.35 -17.82 -0.10 1.63 16 18 N -0.89 -25.90 12.30 55.43 0.68 -25.21 16 19 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 C -0.12 -2.42 6.04 -25.61 -0.15 -2.57 16 24 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.71 6.57 -51.93 -0.34 0.36 16 30 H 0.06 0.71 7.68 -51.93 -0.40 0.31 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.64 7.68 -51.93 -0.40 0.24 16 34 H 0.07 0.97 7.61 -51.93 -0.39 0.57 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.02 0.30 8.07 -51.93 -0.42 -0.12 16 37 H 0.34 4.89 6.05 -39.29 -0.24 4.65 16 38 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.07 1.31 8.05 -51.93 -0.42 0.89 16 40 H 0.04 1.07 8.05 -51.93 -0.42 0.65 16 41 H 0.07 1.69 7.57 -51.93 -0.39 1.30 16 42 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.05 0.95 7.47 -51.93 -0.39 0.56 16 44 H 0.05 1.10 7.65 -51.93 -0.40 0.71 16 LS Contribution 340.73 15.07 5.13 5.13 Total: -1.00 -28.74 340.73 -8.02 -36.76 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -8.37 Total: 0.43 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: 0.46 Total: -18.14 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: 0.10 Total: -36.14 kcal Atomic # 8 Polarization: -4.21 SS G_CDS: -0.33 Total: -4.54 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.74 -8.02 -36.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382255990.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.354 kcal (2) G-P(sol) polarization free energy of solvation -28.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds