Wall clock time and date at job start Mon Mar 30 2020 07:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 114.00589 * 2 1 4 4 C 1.52999 * 109.47338 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47084 * 60.00041 * 4 3 2 6 6 C 1.53002 * 109.47268 * 299.99826 * 4 3 2 7 7 C 1.52999 * 109.47356 * 179.97438 * 4 3 2 8 8 N 1.46899 * 109.47397 * 180.02562 * 7 4 3 9 9 C 1.46900 * 111.00040 * 180.02562 * 8 7 4 10 10 H 1.08999 * 110.05430 * 326.41679 * 9 8 7 11 11 C 1.54268 * 110.03156 * 87.82956 * 9 8 7 12 12 C 1.54895 * 104.19476 * 142.89360 * 11 9 8 13 13 C 1.54961 * 102.77671 * 322.08719 * 12 11 9 14 14 H 1.08997 * 110.47708 * 279.23123 * 13 12 11 15 15 C 1.50704 * 110.53246 * 156.56513 * 13 12 11 16 16 H 1.07999 * 120.00284 * 245.24703 * 15 13 12 17 17 C 1.37872 * 119.99722 * 65.23641 * 15 13 12 18 18 N 1.31521 * 120.00371 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00100 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46909 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46894 * 120.00328 * 19 17 15 22 22 H 1.48495 * 109.47491 * 240.00492 * 19 17 15 23 23 C 1.53869 * 110.03244 * 204.99899 * 9 8 7 24 24 H 1.09001 * 109.47546 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46729 * 300.00237 * 1 2 3 26 26 H 1.08997 * 109.46927 * 59.99675 * 1 2 3 27 27 H 1.09004 * 109.47107 * 59.99816 * 3 2 1 28 28 H 1.08995 * 109.46748 * 300.00157 * 3 2 1 29 29 H 1.09000 * 109.47324 * 180.02562 * 5 4 3 30 30 H 1.09001 * 109.47239 * 299.99653 * 5 4 3 31 31 H 1.09003 * 109.47332 * 59.99789 * 5 4 3 32 32 H 1.08996 * 109.47477 * 300.00209 * 6 4 3 33 33 H 1.09007 * 109.46788 * 59.99981 * 6 4 3 34 34 H 1.09000 * 109.47374 * 179.97438 * 6 4 3 35 35 H 1.09004 * 109.47042 * 59.99985 * 7 4 3 36 36 H 1.08998 * 109.47172 * 300.00683 * 7 4 3 37 37 H 1.00896 * 111.00000 * 56.04634 * 8 7 4 38 38 H 1.08997 * 110.48788 * 261.57268 * 11 9 8 39 39 H 1.09000 * 110.48806 * 24.08568 * 11 9 8 40 40 H 1.09001 * 110.75082 * 80.37254 * 12 11 9 41 41 H 1.08991 * 110.75596 * 203.55944 * 12 11 9 42 42 H 0.96993 * 120.00175 * 179.97438 * 18 17 15 43 43 H 1.09002 * 110.03268 * 0.02562 * 23 9 8 44 44 H 1.08995 * 110.03391 * 121.38432 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 3.9874 0.4250 -1.2483 6 6 3.9865 0.4254 1.2502 7 6 4.1580 2.5821 0.0000 8 7 5.6224 2.4661 0.0000 9 6 6.2555 3.7916 0.0000 10 1 5.6469 4.4965 -0.5664 11 6 6.4338 4.2921 1.4483 12 6 7.7935 5.0337 1.4293 13 6 8.6514 4.1524 0.4866 14 1 9.0438 3.2891 1.0239 15 6 9.7754 4.9579 -0.1125 16 1 9.8003 5.1422 -1.1764 17 6 10.7718 5.4597 0.6976 18 7 10.7417 5.2350 1.9931 19 14 12.1646 6.4588 -0.0448 20 1 11.9677 6.5680 -1.5127 21 1 12.1740 7.8171 0.5554 22 1 13.4590 5.7860 0.2327 23 6 7.6649 3.7025 -0.6109 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.6887 1.8464 0.8900 28 1 1.6887 1.8463 -0.8899 29 1 5.0740 0.3384 -1.2476 30 1 3.5441 -0.5708 -1.2483 31 1 3.6662 0.9657 -2.1385 32 1 3.6645 0.9665 2.1400 33 1 3.5430 -0.5703 1.2502 34 1 5.0730 0.3389 1.2505 35 1 3.8360 3.1236 0.8896 36 1 3.8366 3.1226 -0.8904 37 1 5.9412 1.9127 -0.7811 38 1 5.6295 4.9769 1.7170 39 1 6.4652 3.4513 2.1413 40 1 7.6800 6.0379 1.0211 41 1 8.2270 5.0712 2.4286 42 1 11.4428 5.5877 2.5629 43 1 7.8790 2.6758 -0.9078 44 1 7.7402 4.3635 -1.4742 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382255990.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:57 Heat of formation + Delta-G solvation = -88.847061 kcal Electronic energy + Delta-G solvation = -19605.416768 eV Core-core repulsion = 16748.919626 eV Total energy + Delta-G solvation = -2856.497142 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.06958 -39.02080 -37.18757 -34.87364 -33.16133 -29.89642 -28.62883 -28.22180 -28.05951 -26.79496 -25.70974 -24.50660 -21.18561 -20.62575 -19.77532 -18.51342 -17.35561 -16.84565 -16.74312 -16.55523 -16.01197 -15.88595 -15.49919 -14.85844 -14.53007 -14.29742 -14.10155 -13.97414 -13.50628 -13.30412 -12.96222 -12.72274 -12.59410 -12.57009 -12.40189 -12.37638 -12.04382 -11.84374 -11.74511 -11.53741 -11.40570 -11.39875 -11.32316 -10.94101 -10.76309 -10.54478 -10.43028 -9.20724 -8.09097 -6.18868 1.40419 1.42006 1.53382 2.44839 2.76526 3.21162 3.48951 3.87277 3.93397 3.99124 4.07343 4.17986 4.43183 4.45294 4.48783 4.51198 4.60384 4.67270 4.73188 4.79531 4.86508 4.87226 4.88791 4.98487 5.02255 5.10213 5.14788 5.15147 5.24877 5.28787 5.33440 5.46765 5.50052 5.54092 5.58918 5.67617 5.95435 6.03730 6.23781 6.32924 6.43478 6.59954 6.93382 7.48308 8.99868 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.058015 B = 0.003547 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.519383 B = 7891.395578 C = 8021.929842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.405 6.405 3 C 0.074 3.926 4 C -0.056 4.056 5 C -0.137 4.137 6 C -0.122 4.122 7 C 0.073 3.927 8 N -0.682 5.682 9 C 0.098 3.902 10 H 0.046 0.954 11 C -0.103 4.103 12 C -0.095 4.095 13 C 0.043 3.957 14 H -0.005 1.005 15 C -0.530 4.530 16 H 0.052 0.948 17 C 0.009 3.991 18 N -0.920 5.920 19 Si 0.953 3.047 20 H -0.266 1.266 21 H -0.281 1.281 22 H -0.282 1.282 23 C -0.108 4.108 24 H 0.095 0.905 25 H 0.046 0.954 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.045 0.955 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.035 0.965 37 H 0.342 0.658 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.033 0.967 41 H 0.034 0.966 42 H 0.259 0.741 43 H 0.056 0.944 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.624 -7.712 -4.868 21.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.324 6.324 3 C -0.003 4.003 4 C -0.057 4.057 5 C -0.194 4.194 6 C -0.180 4.180 7 C -0.056 4.056 8 N -0.315 5.315 9 C -0.012 4.012 10 H 0.064 0.936 11 C -0.141 4.141 12 C -0.133 4.133 13 C 0.025 3.975 14 H 0.013 0.987 15 C -0.568 4.568 16 H 0.071 0.929 17 C -0.189 4.189 18 N -0.560 5.560 19 Si 0.779 3.221 20 H -0.190 1.190 21 H -0.207 1.207 22 H -0.208 1.208 23 C -0.146 4.146 24 H 0.113 0.887 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.053 0.947 37 H 0.163 0.837 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.052 0.948 41 H 0.053 0.947 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -19.382 -7.923 -4.051 21.327 hybrid contribution 0.751 1.136 -0.849 1.604 sum -18.631 -6.786 -4.900 20.425 Atomic orbital electron populations 1.22890 0.79944 1.03603 1.00604 1.87838 1.20881 1.28210 1.95506 1.22508 0.92701 0.84541 1.00585 1.20512 0.92885 0.95109 0.97170 1.21772 1.01069 1.00486 0.96067 1.21592 1.01246 0.99277 0.95840 1.21921 0.87654 0.95486 1.00549 1.60585 1.05815 1.14716 1.50381 1.22007 0.93978 0.89399 0.95813 0.93577 1.22360 0.96502 0.98787 0.96460 1.22234 0.94364 0.97537 0.99212 1.19359 0.92243 0.93524 0.92412 0.98673 1.21641 1.08461 1.33021 0.93710 0.92927 1.25792 1.00379 0.97501 0.95274 1.70112 1.34540 1.46681 1.04652 0.85586 0.79252 0.78426 0.78872 1.19012 1.20698 1.20764 1.22311 0.94105 0.99837 0.98370 0.88696 0.93535 0.93365 0.92876 0.92584 0.92526 0.92119 0.92571 0.93579 0.92898 0.92658 0.91304 0.94660 0.83691 0.92160 0.92215 0.94767 0.94731 0.93223 0.92555 0.92977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.59 16 2 O -0.41 -8.01 9.35 -148.98 -1.39 -9.41 16 3 C 0.07 1.36 4.81 71.98 0.35 1.71 16 4 C -0.06 -1.19 0.68 -52.18 -0.04 -1.22 16 5 C -0.14 -2.78 8.00 71.98 0.58 -2.20 16 6 C -0.12 -2.88 8.17 71.98 0.59 -2.30 16 7 C 0.07 1.71 4.48 86.30 0.39 2.09 16 8 N -0.68 -19.54 5.48 -487.84 -2.67 -22.21 16 9 C 0.10 3.33 3.25 45.64 0.15 3.48 16 10 H 0.05 1.48 7.81 -2.39 -0.02 1.46 16 11 C -0.10 -3.91 6.49 31.67 0.21 -3.71 16 12 C -0.09 -4.57 5.75 31.91 0.18 -4.39 16 13 C 0.04 2.22 2.72 -10.44 -0.03 2.20 16 14 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 15 C -0.53 -29.81 8.47 25.60 0.22 -29.59 16 16 H 0.05 2.89 7.54 -2.91 -0.02 2.87 16 17 C 0.01 0.51 5.35 84.65 0.45 0.96 16 18 N -0.92 -54.95 12.30 21.45 0.26 -54.69 16 19 Si 0.95 44.42 29.54 68.60 2.03 46.45 16 20 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 21 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 22 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 23 C -0.11 -4.41 6.04 31.32 0.19 -4.22 16 24 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 1.20 6.57 -2.39 -0.02 1.18 16 30 H 0.06 1.26 7.68 -2.39 -0.02 1.25 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.05 1.23 7.68 -2.38 -0.02 1.21 16 34 H 0.05 1.47 7.61 -2.39 -0.02 1.45 16 35 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.04 0.77 8.07 -2.39 -0.02 0.75 16 37 H 0.34 9.31 6.05 -89.70 -0.54 8.76 16 38 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.06 2.34 8.05 -2.39 -0.02 2.32 16 40 H 0.03 1.67 8.05 -2.39 -0.02 1.65 16 41 H 0.03 1.84 7.57 -2.39 -0.02 1.82 16 42 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 43 H 0.06 2.17 7.47 -2.39 -0.02 2.15 16 44 H 0.05 2.12 7.65 -2.39 -0.02 2.10 16 Total: -1.00 -61.99 340.73 3.09 -58.90 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.39 Total: 16.56 kcal Atomic # 6 Polarization: -40.08 SS G_CDS: 4.48 Total: -35.60 kcal Atomic # 7 Polarization: -74.49 SS G_CDS: -2.41 Total: -76.90 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: -1.39 Total: -9.41 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -61.99 3.09 -58.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382255990.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.952 kcal (2) G-P(sol) polarization free energy of solvation -61.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds