Wall clock time and date at job start Mon Mar 30 2020 07:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99629 * 2 1 4 4 C 1.53000 * 109.46726 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47233 * 299.99582 * 4 3 2 6 6 C 1.52996 * 109.47328 * 60.00051 * 4 3 2 7 7 C 1.53001 * 109.46886 * 180.02562 * 4 3 2 8 8 N 1.46902 * 109.46901 * 180.02562 * 7 4 3 9 9 C 1.46907 * 110.99665 * 179.97438 * 8 7 4 10 10 H 1.08995 * 110.43768 * 36.08251 * 9 8 7 11 11 C 1.54889 * 110.48454 * 273.54560 * 9 8 7 12 12 C 1.54894 * 102.74793 * 203.38348 * 11 9 8 13 13 C 1.54268 * 104.19783 * 37.93824 * 12 11 9 14 14 H 1.08995 * 110.03187 * 95.67251 * 13 12 11 15 15 C 1.50694 * 110.03394 * 217.06168 * 13 12 11 16 16 H 1.08004 * 120.00266 * 118.54488 * 15 13 12 17 17 C 1.37880 * 119.99798 * 298.54563 * 15 13 12 18 18 N 1.31511 * 120.00134 * 0.02562 * 17 15 13 19 19 Si 1.86805 * 119.99839 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46980 * 89.99981 * 19 17 15 21 21 H 1.48496 * 109.46918 * 210.00119 * 19 17 15 22 22 H 1.48496 * 109.47007 * 330.00073 * 19 17 15 23 23 C 1.53885 * 106.59786 * 336.39444 * 13 12 11 24 24 H 1.09007 * 109.47484 * 299.99646 * 1 2 3 25 25 H 1.09004 * 109.47459 * 59.99983 * 1 2 3 26 26 H 1.09000 * 109.47196 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47382 * 59.99956 * 3 2 1 28 28 H 1.09001 * 109.46938 * 299.99942 * 3 2 1 29 29 H 1.09000 * 109.46986 * 60.00203 * 5 4 3 30 30 H 1.08993 * 109.47662 * 180.02562 * 5 4 3 31 31 H 1.09002 * 109.47075 * 300.00932 * 5 4 3 32 32 H 1.08992 * 109.47554 * 59.99639 * 6 4 3 33 33 H 1.09004 * 109.47108 * 179.97438 * 6 4 3 34 34 H 1.09000 * 109.46870 * 299.99783 * 6 4 3 35 35 H 1.09001 * 109.47109 * 299.99380 * 7 4 3 36 36 H 1.09002 * 109.47508 * 59.99571 * 7 4 3 37 37 H 1.00898 * 111.00229 * 56.04458 * 8 7 4 38 38 H 1.09000 * 110.75390 * 321.68776 * 11 9 8 39 39 H 1.08991 * 110.75836 * 85.06658 * 11 9 8 40 40 H 1.08999 * 110.48965 * 156.61856 * 12 11 9 41 41 H 1.08997 * 110.48534 * 279.26394 * 12 11 9 42 42 H 0.96999 * 120.00295 * 179.97438 * 18 17 15 43 43 H 1.08994 * 110.02837 * 240.71653 * 23 13 12 44 44 H 1.09000 * 110.03140 * 119.28152 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9874 0.4253 1.2483 6 6 3.9864 0.4257 -1.2502 7 6 4.1576 2.5825 0.0000 8 7 5.6221 2.4665 -0.0012 9 6 6.2551 3.7921 -0.0013 10 1 5.6747 4.4911 0.6010 11 6 6.4065 4.3205 -1.4494 12 6 7.5672 5.3383 -1.3223 13 6 8.5380 4.6818 -0.3191 14 1 9.3209 4.1445 -0.8542 15 6 9.1494 5.7329 0.5710 16 1 8.9852 5.6991 1.6380 17 6 9.9183 6.7377 0.0233 18 7 10.1178 6.7792 -1.2760 19 14 10.6768 8.0403 1.1267 20 1 12.0216 7.5921 1.5694 21 1 10.8025 9.3144 0.3743 22 1 9.8094 8.2499 2.3136 23 6 7.7037 3.6986 0.5208 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6885 1.8465 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.5441 -0.5705 1.2484 30 1 5.0739 0.3396 1.2482 31 1 3.6660 0.9660 2.1385 32 1 3.6644 0.9666 -2.1399 33 1 5.0730 0.3400 -1.2508 34 1 3.5430 -0.5701 -1.2501 35 1 3.8357 3.1239 -0.8896 36 1 3.8363 3.1229 0.8904 37 1 5.9404 1.9141 -0.7833 38 1 6.6747 3.5120 -2.1294 39 1 5.4927 4.8157 -1.7774 40 1 8.0550 5.4831 -2.2862 41 1 7.2007 6.2880 -0.9326 42 1 10.6584 7.4863 -1.6614 43 1 7.7405 3.9818 1.5727 44 1 8.0819 2.6843 0.3932 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382255991.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:00 Heat of formation + Delta-G solvation = -73.695074 kcal Electronic energy + Delta-G solvation = -19607.140928 eV Core-core repulsion = 16751.300825 eV Total energy + Delta-G solvation = -2855.840103 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.06414 -37.74012 -36.08342 -33.17670 -31.46581 -28.02020 -27.59549 -27.16796 -26.96510 -25.85381 -24.07220 -23.05916 -19.80757 -19.06559 -18.58874 -16.62534 -16.36550 -16.00836 -15.74434 -15.04692 -14.61316 -14.38449 -14.21544 -13.42917 -13.37396 -13.19758 -12.64783 -12.35084 -12.13548 -11.86700 -11.75031 -11.67330 -11.63779 -11.03900 -11.00414 -10.79703 -10.68712 -10.61127 -10.52609 -10.42709 -9.94775 -9.82714 -9.75835 -9.49468 -9.15099 -8.66139 -8.31865 -7.87464 -5.95261 -3.97340 3.33508 3.40143 3.43517 3.54037 4.48467 4.62124 4.75297 4.84181 4.97608 5.09518 5.11203 5.29694 5.35831 5.39768 5.40716 5.50122 5.60428 5.68330 5.79877 5.83155 5.90454 5.98224 6.05053 6.06321 6.23328 6.34918 6.38978 6.53830 6.54622 6.67070 6.76905 6.90789 6.97556 7.13678 7.24405 7.41621 7.59785 7.79385 7.80015 7.95241 8.08700 8.53973 9.06261 9.66128 11.14151 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.050813 B = 0.003584 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.913205 B = 7811.396819 C = 7922.947400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.071 3.929 4 C -0.060 4.060 5 C -0.127 4.127 6 C -0.140 4.140 7 C 0.070 3.930 8 N -0.680 5.680 9 C 0.086 3.914 10 H 0.072 0.928 11 C -0.158 4.158 12 C -0.087 4.087 13 C 0.042 3.958 14 H 0.025 0.975 15 C -0.510 4.510 16 H 0.055 0.945 17 C 0.059 3.941 18 N -0.891 5.891 19 Si 0.887 3.113 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.275 1.275 23 C -0.100 4.100 24 H 0.039 0.961 25 H 0.038 0.962 26 H 0.083 0.917 27 H 0.048 0.952 28 H 0.046 0.954 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.027 0.973 36 H 0.069 0.931 37 H 0.337 0.663 38 H 0.052 0.948 39 H 0.042 0.958 40 H 0.054 0.946 41 H 0.051 0.949 42 H 0.258 0.742 43 H 0.054 0.946 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.672 -11.133 0.542 20.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.303 6.303 3 C -0.006 4.006 4 C -0.061 4.061 5 C -0.184 4.184 6 C -0.197 4.197 7 C -0.060 4.060 8 N -0.311 5.311 9 C -0.024 4.024 10 H 0.091 0.909 11 C -0.198 4.198 12 C -0.126 4.126 13 C 0.024 3.976 14 H 0.043 0.957 15 C -0.548 4.548 16 H 0.073 0.927 17 C -0.142 4.142 18 N -0.530 5.530 19 Si 0.716 3.284 20 H -0.208 1.208 21 H -0.214 1.214 22 H -0.200 1.200 23 C -0.139 4.139 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.102 0.898 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.045 0.955 36 H 0.087 0.913 37 H 0.157 0.843 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -16.424 -11.270 1.102 19.950 hybrid contribution -0.020 1.473 -0.466 1.545 sum -16.444 -9.798 0.636 19.152 Atomic orbital electron populations 1.22714 0.81519 1.02497 0.99803 1.87872 1.19117 1.28014 1.95346 1.22571 0.93770 0.84374 0.99888 1.20577 0.91863 0.96138 0.97473 1.21655 1.02268 0.99106 0.95377 1.21811 1.01408 1.00501 0.96019 1.21874 0.89411 0.94464 1.00242 1.60676 1.04334 1.16359 1.49699 1.22509 0.96507 0.87820 0.95517 0.90924 1.23279 0.99531 1.00172 0.96770 1.22185 0.93724 0.96277 1.00390 1.19259 0.92773 0.92798 0.92801 0.95712 1.21324 1.30318 1.09866 0.93319 0.92701 1.25000 0.96358 0.97896 0.94914 1.69975 1.39500 1.33369 1.10162 0.86669 0.79689 0.81325 0.80757 1.20775 1.21387 1.19967 1.22241 0.92511 0.99039 1.00071 0.94257 0.94305 0.89821 0.93335 0.93571 0.92907 0.91176 0.93407 0.93322 0.92050 0.91925 0.95522 0.91270 0.84308 0.92916 0.93899 0.92710 0.93022 0.93221 0.92673 0.93560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.38 -4.18 9.35 -35.23 -0.33 -4.50 16 3 C 0.07 0.74 4.81 37.16 0.18 0.92 16 4 C -0.06 -0.68 0.68 -154.51 -0.10 -0.79 16 5 C -0.13 -1.50 8.17 37.16 0.30 -1.20 16 6 C -0.14 -1.56 8.00 37.16 0.30 -1.26 16 7 C 0.07 0.90 4.49 -3.82 -0.02 0.88 16 8 N -0.68 -10.16 5.48 -104.97 -0.58 -10.73 16 9 C 0.09 1.54 3.16 -66.05 -0.21 1.33 16 10 H 0.07 1.34 7.87 -51.93 -0.41 0.93 16 11 C -0.16 -2.95 6.41 -24.74 -0.16 -3.11 16 12 C -0.09 -2.04 5.36 -25.07 -0.13 -2.17 16 13 C 0.04 1.06 2.84 -90.65 -0.26 0.80 16 14 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 15 C -0.51 -14.11 8.38 -34.44 -0.29 -14.40 16 16 H 0.05 1.51 7.33 -52.48 -0.38 1.12 16 17 C 0.06 1.67 5.32 -17.82 -0.09 1.57 16 18 N -0.89 -25.88 12.33 55.43 0.68 -25.19 16 19 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 23 C -0.10 -2.11 6.18 -25.61 -0.16 -2.27 16 24 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.62 7.68 -51.93 -0.40 0.22 16 30 H 0.07 0.90 7.60 -51.93 -0.39 0.51 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.69 6.57 -51.93 -0.34 0.35 16 34 H 0.06 0.70 7.68 -51.93 -0.40 0.30 16 35 H 0.03 0.35 8.12 -51.93 -0.42 -0.08 16 36 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 37 H 0.34 4.88 6.34 -39.29 -0.25 4.63 16 38 H 0.05 0.94 7.82 -51.93 -0.41 0.53 16 39 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.05 1.37 7.93 -51.93 -0.41 0.96 16 41 H 0.05 1.29 7.85 -51.93 -0.41 0.88 16 42 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.05 1.20 7.37 -51.93 -0.38 0.81 16 44 H 0.05 0.93 8.04 -51.93 -0.42 0.51 16 LS Contribution 340.71 15.07 5.13 5.13 Total: -1.00 -28.51 340.71 -8.02 -36.53 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -8.38 Total: 0.60 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: 0.47 Total: -18.34 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: 0.11 Total: -35.93 kcal Atomic # 8 Polarization: -4.18 SS G_CDS: -0.33 Total: -4.50 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.51 -8.02 -36.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382255991.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.161 kcal (2) G-P(sol) polarization free energy of solvation -28.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds